LOC110522829 (LOC106567920)


Basic Information

Item Value
gene id LOC110522829
gene name LOC106567920
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23421643 ~ 23422884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601299.1
ATGAAAACACACCGCTCCTTTGACAAAGTCAAATTCAAGTTACTTCTGATCGGTGGGAGGCAGCTCTCTAAGATCTGGCCAGAGCCGTCCGTCCTTCAGCCAGTGTGGGAAAACCTCCTGAAGTACCACCAGGCTGAGCCTCAGAGCCCTCTGTTCCCCGTGGTCATCTCATTCTCCACCTACCTCCTCCTGGTGACCCTCTACACCCTGTTGGACGTCCTGGCCCCCAGCTGGCCCACCCTCAACCGCTACAAGCTCCACCCAGACAGACCTGTCACATGGGACAACATCTGGACCATGCTCGGCCTCACAGTCCACAACCACCTGGTCTAAGTCTTCCCTCCTCTGTGGGCCAGGGTGTGGAGGCCACCCATCCTGCTCCCTCGCAAAGCCCCCACTCTAACAAGCTTCCTCCTGGGCATCCTGGGGTGCACAGTGGTCTTTGACTTCCAGTACTACCTCTGGCATCTCCTCCACCACAGAGTCCCCTGGCTGTACTGTACATTCCACGCCATGCACCACCAGTATCTTCAGCCCTTCAGCCTGGTCACCCAGTACCTGTCCGCATGGGAGCTGATCAGTGTGGGATTCTGGACCACCGTGGACCCCCTCTTGCTGCAGTGCCACTGCTTGACGACCTGGTGCTTCATGGTGTTCACCATCTGTGTGTCCACTGAGGACCACCATGGCTACGACTTCCCCTGGTCTCTGCACCGCATGGTACCCTTCGGCCTGTGGGGCGGACCCCCCAAACATGACGCTCACCACCAGATGCCTGGGGCAAACTTTGCCCCGTTCTTCTCCCACTGGGACTGGCTGGGGGGGACCAACATGGTGCCTACCATCCCTTCCAGAGATACATGTTACGAAAGGTCTGAAAGGAAGAAAAGATAA

Function

NR:

description
LOW QUALITY PROTEIN: cholesterol 25-hydroxylase-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601299.1 True 894 mRNA 0.58 3 23421643 23422884

Neighbor

gene id symbol gene type direction distance location
LOC110523456 crhbp coding upstream 29662 23370966 ~ 23391981 (+)
wdr41 wdr41 coding upstream 170055 23237803 ~ 23251588 (+)
LOC110523452 otp coding upstream 206828 23208733 ~ 23214815 (+)
tbca tbca coding upstream 218077 23193874 ~ 23203566 (+)
LOC110523451 ap3b1 coding upstream 263623 23065654 ~ 23158020 (+)
LOC110522830 f2rl2 coding downstream 48104 23470988 ~ 23474212 (+)
LOC110522832 LOC106567816 coding downstream 201037 23623921 ~ 23678038 (+)
vatg1 LOC106567829 coding downstream 286959 23709843 ~ 23711877 (+)
LOC110523463 copt1 coding downstream 290196 23713080 ~ 23735468 (+)
LOC118964576 NA coding downstream 315820 23737834 ~ 23747312 (+)
G379282 NA non-coding upstream 60955 23360224 ~ 23360688 (+)
G379279 aggf1 non-coding upstream 65214 23356006 ~ 23356429 (+)
G379273 NA non-coding upstream 70280 23351105 ~ 23351363 (+)
G379263 NA non-coding upstream 91049 23330368 ~ 23330594 (+)
G379202 NA non-coding upstream 217544 23203871 ~ 23204099 (+)
G379333 NA non-coding downstream 33481 23456365 ~ 23512877 (+)
G379350 NA non-coding downstream 53596 23476480 ~ 23515214 (+)
G379356 NA non-coding downstream 67195 23490079 ~ 23492379 (+)
G379392 NA non-coding downstream 137138 23560022 ~ 23567553 (+)
G379395 NA non-coding downstream 143593 23566477 ~ 23586088 (+)
lhfpl2a lhfpl2 other upstream 414356 22942205 ~ 23007315 (+)
G378868 NA other upstream 791974 22602110 ~ 22629669 (+)
G378832 NA other upstream 915373 22503752 ~ 22506270 (+)
G378660 NA other upstream 1189723 22172535 ~ 22231920 (+)
LOC110523400 LOC106568542 other upstream 2262724 21108129 ~ 21160149 (+)
G380340 NA other downstream 317550 23740434 ~ 23741459 (+)
LOC110523468 vamp5 other downstream 415640 23838502 ~ 23844345 (+)
G381239 NA other downstream 1264855 24687739 ~ 24776429 (+)
G382186 NA other downstream 1802558 25225442 ~ 25225730 (+)

Expression


Co-expression Network