vatg1 (LOC106567829)


Basic Information

Item Value
gene id vatg1
gene name LOC106567829
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23709843 ~ 23711877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165176.2
GACTGCAGTAAATTCACCAACCTTCGCTGCAAACACAGACCAGCAGCTGGAGGAACCACATATTCTTGTCCGTCTATCTCTCTCCGAACTAAACAATGGCAAGCCAGTCCCAGGGTATCCAGCAGCTTTTGCAAGCTGAAAAACGAGCTGCAGAAAAAGTAGCAGAAGCCCGCAAACGTAAGAACCGTCGACTGAAGCAGGCCAAGGAGGAAGCCCAGGCCGAGATTGAGCAGTACCGTATGCAGAGGGAGAAGGATTTTAAGACCAAGGAGGCTGCGGCTCTTGGATCCCATGGTAACTCTGCTGTAGAGGTGGACAAAGAGACTGTGGGGAAGATGGGTAGCATCCAGACCAGCTACCAGCAGAACCGGGAAGGGGTGCTGGGCAACCTGCTTAAGATGGTGTGTGACATCAAGCCAGAGATCCATGTCAATTACCGTTTTGCTGGTTAAACCCCCTCATCACAACCCCTTATTAAACAAAGGAAACACTGAGACACTCTCATTGCACTGCCATCAGTTGACACATGCTTCATTGACACATCTACTACACCCATGCATGGTGCAAACCTCTTGGCCTGCCTGCTCATAACTTTAATGCTATACCCACAAGTTTATTTTCTCTATAAATATAATCAACAGATGTGTATATGATTCAAATAGGTATACCTTTGTCCAGTAAAATATAAAGCATATTCACTCTGTTGGTTAGTCAAAGCAGGCAGAGGTTCTTTTGGTCTTATGCAGTGTCTCTGTTTCCCATCTTCATCGCTTGTAGTATCAAGGTTTTTATGTAAAGGTtagtgtgtgtctttctgtgcaATGTTTATTAATATGGACATATTGTTCGTTTTATTTGTGGAGACCAAAATACAGTGCTTATTTCACTTAATGGACTGTTAGGCCTGGAAAAAAAAGATTGCTGTTTTGTTTGAATGTTTCCCTGCTGTCCCAATTTGATTTTTAATCTCTATGAATATATTATCCTGTATAGTGGATGTTCCTCTGTTCACAGC

Function

NR:

description
PREDICTED: V-type proton ATPase subunit G 1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055085 transmembrane transport biological_process
GO:0016471 vacuolar proton-transporting V-type ATPase complex cellular_component

KEGG:

id description
K02152 ATPeV1G, ATP6G; V-type H+-transporting ATPase subunit G

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165176.2 True 1015 mRNA 0.43 3 23709843 23711877

Neighbor

gene id symbol gene type direction distance location
LOC110522832 LOC106567816 coding upstream 31805 23623921 ~ 23678038 (+)
LOC110522830 f2rl2 coding upstream 235631 23470988 ~ 23474212 (+)
LOC110522829 LOC106567920 coding upstream 286959 23421643 ~ 23422884 (+)
LOC110523456 crhbp coding upstream 317862 23370966 ~ 23391981 (+)
wdr41 wdr41 coding upstream 458255 23237803 ~ 23251588 (+)
LOC110523463 copt1 coding downstream 1203 23713080 ~ 23735468 (+)
LOC118964576 NA coding downstream 26827 23737834 ~ 23747312 (+)
LOC110523468 vamp5 coding downstream 126625 23838502 ~ 23844345 (+)
stard4 stard4 coding downstream 136341 23848218 ~ 23853553 (+)
marveld2a mald2 coding downstream 149274 23861151 ~ 23872777 (+)
G380279 NA non-coding upstream 91627 23617626 ~ 23618216 (+)
G380277 NA non-coding upstream 93590 23615857 ~ 23616253 (+)
G380258 NA non-coding upstream 105111 23604518 ~ 23604732 (+)
G379395 NA non-coding upstream 123755 23566477 ~ 23586088 (+)
G379392 NA non-coding upstream 142290 23560022 ~ 23567553 (+)
G380357 NA non-coding downstream 41344 23753221 ~ 23753477 (+)
G380363 NA non-coding downstream 50144 23762021 ~ 23762408 (+)
G380365 NA non-coding downstream 51426 23763303 ~ 23763523 (+)
G380336 NA non-coding downstream 51902 23763779 ~ 23765844 (+)
lhfpl2a lhfpl2 other upstream 702556 22942205 ~ 23007315 (+)
G378868 NA other upstream 1080174 22602110 ~ 22629669 (+)
G378832 NA other upstream 1203573 22503752 ~ 22506270 (+)
G378660 NA other upstream 1477923 22172535 ~ 22231920 (+)
G380340 NA other downstream 28557 23740434 ~ 23741459 (+)
G381239 NA other downstream 975862 24687739 ~ 24776429 (+)
G382186 NA other downstream 1513565 25225442 ~ 25225730 (+)
LOC110523503 NA other downstream 2463068 26174884 ~ 26186710 (+)

Expression


Co-expression Network