LOC110523463 (copt1)


Basic Information

Item Value
gene id LOC110523463
gene name copt1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23713080 ~ 23735468 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602162.2
CTACATTTTCCTGGTTTGTCAAAAGTCATCTTGCTGTGGTTGTTATACTTAAGTGTGACGTGTGCTGTCGGCGTTTTGCCAGTAGAGTAAACGGGAATCTGGACGTTCATTTGAAAGCTCATAGTTAATCATTCGGTTGTGCGTTATTGAGACCAAAGAAAATCCCGCTGGAACCGAGTTCACTATATGTTGTGAGTACTACATTCGAGACGAACATGGACCACACGAACCATGACCATGACCACAGCAAAATGGCTGGCAGCATGGCTCCTCCCATGGTCACAGGCTCCCACGAGGATCATctagggggaggtggaggagggggccATATGATGAAAATGACCTTCTACTTTGGCTACACAAACGTGGAGCTGCTGTTTGCCAGCCTTGTCATCAACACACCTGGAGAGATGGTGGCGGCCTGCTTTGGTTGTTTCCTGCTGGCTGTGCTCTACGAGGGGCTGAAGATTGGCAGGGAGTTCCTGCTGAGGAGGAACCAGGTCAACGTGCGTTACAACTCCATGCCTGTCCCGGGGGCAGACGGCACCATGGTCATGGAGACCCACAAGACTGTAGGCCAACGGATGCTGAGTATGGCACACTTGCTGCAGACGGTGTTACACATCATCCAGGTGGTGGTCAGCTATTTCCTCATGTTGGTCTTCATGACCTACAATGCTTATCTGTGTATCGCCGTTGCAGCCGGGGCAGGCGTCGGATACTTCTTATTCAGCTGGAAAAAGGCTGTGGTTGTTGATATCACTGAACACTGTCActaatagcccccccccccccccccccccccccagtctctcttcatcctccacccacacacgcacatacattcacacacagGTATTCTCCATTTAATCGTCATCATCATGCATCCAGTTTTATATACGTTTATCTTATTTAAATGGTTCACTTTGTCACACAAAAGTTGCTTGATGGAAAATGTGAATTACGACTGAGCTTTTACATTTGTGACATTCAAGTCTGTCCTTTTAGTAGGTCCAGAAGACTACCCTCGACAACTAGCATGATGTTGGTATTCCAAATGCTGGCTTCTGTTATACCAACACCACTCCTGTCTGGCTCCACAGGGCCAAACATCCACTTCCCCCACTCGTGCCATTCTTCCATTCTGTTTTTGTTATTGCGCAACAACCAGTGCAGGTTCATCCTTGTAGCACTGGGGCTCTAGGCTCTTCTGCTCAGAGGGCTATTTATGACCCTTACAACAACCTCTCTCATTGAAGATCATTGTGAATAGGGCCTGAGTTTTTCCTGACCCCACCTGGGCCCAAGTTAAAGCCAATGTGTTCTTCTGAAGCCTTGTCATATCTGCATTCCATCTGACAATCTGGCGGGGGGGTCTAACATAATCAGTGTCTCAACTACAGGAGTCAAAGGTCATACTTGGGATTGTGTGGAGATGGTGGGGCAGCTCTGGCTGTATGACTAAGCCTTACTAAACCCTTTGCCTTAAAGGAGGGAAACATGACAGCCTAGGccaactgtagtctactgacaagTGCCAGTGCTATTTTAAAGAAGTTTGTCCAGTGGACAAGCAGTCAAGTACAGTACACTTTAAATGTTGTGTGATTATATACATTAGTGTAATGCAGCAGAGCGTGACAACATTTGAGACACTCTTCATGAGACACACTGCTATGCAGTGTTCAATTTTGGTAGTTTATGAATGACAACCTCATTATTTACCAATGACACTTGGCACTCGGAGGCTTGATCtgacacacaaatgtaaattgACTCTTGTACATCAAGAAGCCAATATAAAATGTTCATAATATAACTTGGGAGTAACTTTTGGTGCATTCATTCAATAGGCTTAAATTAGTTAGCATGTCAACACAACATGGACACTAGTGTCCTTATTGGAGCAAGTGCTCAGATCCCAAGGACAAGCAGGGAACTATGGGAAAGTACAAGGATGAATCTAGTGCTTTCTCAGACTGGCCTAGTAACATGATTACTGCACCTCTTGTGACCTATTGGTGCTTACGCCTCACAGTTCACACTTTGACAGGAGGGGATATCTATGAAGTAGAACCTAAAGAGGAAGTTGTATTTTTAGTTTCTtgattataatttttttcatCTCTGAGAAATGACTAGTAAATGTTTATCAGTTGCCTAAAGCTGTGTTTTACACCGGCAGTCTGATTCTGATCTTTTAATGATTTGGCAATAGAGCTGATTTGATTGGTTAAAGGACCAATTAGCGGAAATGTCAGAATTGCCTGTCTCTGTAGACCGGtagcccaattctgattttttttttttttttttttttttttttttttttttttttttgttacactcagttaattggtcttttgaccaattagATCTGGAAAATATCGGTTGTagaaagatctgatgtgattggtcaaaagaccaattagtggaaaaaatatcagaattgagcTGCTTGTCTAAACACAGCCTTAGTGATGTGCTGTGCCTGGTTTGAGGGTCAAATTCCTAGTTGCTATAACTGGATTTAACTGCCGCACATTCTCATTACATTACAATCAAGCCAGGGACATTAATAGTTGGTGTATACTTGAACATATTATAACTGTTTCTGCTTTACCACATGGGATCATGTATCAAGATTTATTATTATAGTCTACTGTACAACTCGAGCGTTGAAGTTAATGGGCCAAAACAGCAGTGGGAGTCTGACTGCCACTCCAGCGCAGCAACAGTGTGAACATTACCTGGACTGTTAAGTCCACAGACATGTCTGTATAGTATGACGTATTTACTGTGCTGTAATCATCTAGAGAAAACAAGTAATAAATGGTATCATTCAA
>XM_021602163.2
GACGCATTCACTTTCCCACTCTCTCGAGCAGGCGAGCACACTCGGGATCAGACTACACACCTGTACACATTGATGGGTTGCATGAACACTCGCACACATTGACAAGTATCTTGTCATTGATTTGGCTGTAACAGAAGTTCTGCATGTGGTGAGACATTTGgTACTACATTCGAGACGAACATGGACCACACGAACCATGACCATGACCACAGCAAAATGGCTGGCAGCATGGCTCCTCCCATGGTCACAGGCTCCCACGAGGATCATctagggggaggtggaggagggggccATATGATGAAAATGACCTTCTACTTTGGCTACACAAACGTGGAGCTGCTGTTTGCCAGCCTTGTCATCAACACACCTGGAGAGATGGTGGCGGCCTGCTTTGGTTGTTTCCTGCTGGCTGTGCTCTACGAGGGGCTGAAGATTGGCAGGGAGTTCCTGCTGAGGAGGAACCAGGTCAACGTGCGTTACAACTCCATGCCTGTCCCGGGGGCAGACGGCACCATGGTCATGGAGACCCACAAGACTGTAGGCCAACGGATGCTGAGTATGGCACACTTGCTGCAGACGGTGTTACACATCATCCAGGTGGTGGTCAGCTATTTCCTCATGTTGGTCTTCATGACCTACAATGCTTATCTGTGTATCGCCGTTGCAGCCGGGGCAGGCGTCGGATACTTCTTATTCAGCTGGAAAAAGGCTGTGGTTGTTGATATCACTGAACACTGTCActaatagcccccccccccccccccccccccccagtctctcttcatcctccacccacacacgcacatacattcacacacagGTATTCTCCATTTAATCGTCATCATCATGCATCCAGTTTTATATACGTTTATCTTATTTAAATGGTTCACTTTGTCACACAAAAGTTGCTTGATGGAAAATGTGAATTACGACTGAGCTTTTACATTTGTGACATTCAAGTCTGTCCTTTTAGTAGGTCCAGAAGACTACCCTCGACAACTAGCATGATGTTGGTATTCCAAATGCTGGCTTCTGTTATACCAACACCACTCCTGTCTGGCTCCACAGGGCCAAACATCCACTTCCCCCACTCGTGCCATTCTTCCATTCTGTTTTTGTTATTGCGCAACAACCAGTGCAGGTTCATCCTTGTAGCACTGGGGCTCTAGGCTCTTCTGCTCAGAGGGCTATTTATGACCCTTACAACAACCTCTCTCATTGAAGATCATTGTGAATAGGGCCTGAGTTTTTCCTGACCCCACCTGGGCCCAAGTTAAAGCCAATGTGTTCTTCTGAAGCCTTGTCATATCTGCATTCCATCTGACAATCTGGCGGGGGGGTCTAACATAATCAGTGTCTCAACTACAGGAGTCAAAGGTCATACTTGGGATTGTGTGGAGATGGTGGGGCAGCTCTGGCTGTATGACTAAGCCTTACTAAACCCTTTGCCTTAAAGGAGGGAAACATGACAGCCTAGGccaactgtagtctactgacaagTGCCAGTGCTATTTTAAAGAAGTTTGTCCAGTGGACAAGCAGTCAAGTACAGTACACTTTAAATGTTGTGTGATTATATACATTAGTGTAATGCAGCAGAGCGTGACAACATTTGAGACACTCTTCATGAGACACACTGCTATGCAGTGTTCAATTTTGGTAGTTTATGAATGACAACCTCATTATTTACCAATGACACTTGGCACTCGGAGGCTTGATCtgacacacaaatgtaaattgACTCTTGTACATCAAGAAGCCAATATAAAATGTTCATAATATAACTTGGGAGTAACTTTTGGTGCATTCATTCAATAGGCTTAAATTAGTTAGCATGTCAACACAACATGGACACTAGTGTCCTTATTGGAGCAAGTGCTCAGATCCCAAGGACAAGCAGGGAACTATGGGAAAGTACAAGGATGAATCTAGTGCTTTCTCAGACTGGCCTAGTAACATGATTACTGCACCTCTTGTGACCTATTGGTGCTTACGCCTCACAGTTCACACTTTGACAGGAGGGGATATCTATGAAGTAGAACCTAAAGAGGAAGTTGTATTTTTAGTTTCTtgattataatttttttcatCTCTGAGAAATGACTAGTAAATGTTTATCAGTTGCCTAAAGCTGTGTTTTACACCGGCAGTCTGATTCTGATCTTTTAATGATTTGGCAATAGAGCTGATTTGATTGGTTAAAGGACCAATTAGCGGAAATGTCAGAATTGCCTGTCTCTGTAGACCGGtagcccaattctgattttttttttttttttttttttttttttttttttttttttttgttacactcagttaattggtcttttgaccaattagATCTGGAAAATATCGGTTGTagaaagatctgatgtgattggtcaaaagaccaattagtggaaaaaatatcagaattgagcTGCTTGTCTAAACACAGCCTTAGTGATGTGCTGTGCCTGGTTTGAGGGTCAAATTCCTAGTTGCTATAACTGGATTTAACTGCCGCACATTCTCATTACATTACAATCAAGCCAGGGACATTAATAGTTGGTGTATACTTGAACATATTATAACTGTTTCTGCTTTACCACATGGGATCATGTATCAAGATTTATTATTATAGTCTACTGTACAACTCGAGCGTTGAAGTTAATGGGCCAAAACAGCAGTGGGAGTCTGACTGCCACTCCAGCGCAGCAACAGTGTGAACATTACCTGGACTGTTAAGTCCACAGACATGTCTGTATAGTATGACGTATTTACTGTGCTGTAATCATCTAGAGAAAACAAGTAATAAATGGTATCATTCAA

Function

NR:

description
high affinity copper uptake protein 1-like

GO:

id name namespace
GO:0042539 hypotonic salinity response biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0046688 response to copper ion biological_process
GO:0035434 copper ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005375 copper ion transmembrane transporter activity molecular_function

KEGG:

id description
K14686 SLC31A1, CTR1; solute carrier family 31 (copper transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602162.2 False 2846 mRNA 0.43 5 23713080 23735468
XM_021602163.2 True 2811 mRNA 0.44 5 23724027 23735468

Neighbor

gene id symbol gene type direction distance location
vatg1 LOC106567829 coding upstream 1203 23709843 ~ 23711877 (+)
LOC110522832 LOC106567816 coding upstream 35042 23623921 ~ 23678038 (+)
LOC110522830 f2rl2 coding upstream 238868 23470988 ~ 23474212 (+)
LOC110522829 LOC106567920 coding upstream 290196 23421643 ~ 23422884 (+)
LOC110523456 crhbp coding upstream 321099 23370966 ~ 23391981 (+)
LOC118964576 NA coding downstream 3236 23737834 ~ 23747312 (+)
LOC110523468 vamp5 coding downstream 103034 23838502 ~ 23844345 (+)
stard4 stard4 coding downstream 112750 23848218 ~ 23853553 (+)
marveld2a mald2 coding downstream 125683 23861151 ~ 23872777 (+)
oclna ocln coding downstream 138136 23873604 ~ 23883341 (+)
G380279 NA non-coding upstream 94864 23617626 ~ 23618216 (+)
G380277 NA non-coding upstream 96827 23615857 ~ 23616253 (+)
G380258 NA non-coding upstream 108348 23604518 ~ 23604732 (+)
G379395 NA non-coding upstream 126992 23566477 ~ 23586088 (+)
G379392 NA non-coding upstream 145527 23560022 ~ 23567553 (+)
G380357 NA non-coding downstream 17753 23753221 ~ 23753477 (+)
G380363 NA non-coding downstream 26553 23762021 ~ 23762408 (+)
G380365 NA non-coding downstream 27835 23763303 ~ 23763523 (+)
G380336 NA non-coding downstream 28311 23763779 ~ 23765844 (+)
lhfpl2a lhfpl2 other upstream 705793 22942205 ~ 23007315 (+)
G378868 NA other upstream 1083411 22602110 ~ 22629669 (+)
G378832 NA other upstream 1206810 22503752 ~ 22506270 (+)
G378660 NA other upstream 1481160 22172535 ~ 22231920 (+)
G380340 NA other downstream 4966 23740434 ~ 23741459 (+)
G381239 NA other downstream 952271 24687739 ~ 24776429 (+)
G382186 NA other downstream 1489974 25225442 ~ 25225730 (+)
LOC110523503 NA other downstream 2439477 26174884 ~ 26186710 (+)

Expression


Co-expression Network