LOC118964576


Basic Information

Item Value
gene id LOC118964576
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23737834 ~ 23747312 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051685.1
acacaaggcaacctgcctaaaagactacagacccatagcactcacgtccgtagccatgaagtgctggTACTGTAAATGTATCCATATTGAATGAATGGAGTGAAAACATTGTAGTAGTGAGAGAAATACATTGGAGAGTCAAGCCACATCATACCTTCTCCtgaatacacctgttgtattcggcgcacgtgacaaataaactttgatttgagaaATCCAAACGTTCCCAGGAGGAGGTATGATATGTGGTTTGACTCTCCAATGTATTTCTCTCACTACTACAATGTTTTCACTCCATTCATTCAATATGGAGAtacatttacagtaccagtcaaacgtttggacacctcATTCCaatgttctttatttttactcttttctacattgtagaataatagtgaagatatcaaaactatgaaataacacacatggaatcaagttgcaaccaaaaagtgttaaaccaatcaaaatagaAAGTACAAGAACTTCACAAGACCCTCAGCGTATGTCCTCCATCAGTCTCCAAAATAATTCAAGGACGTCTCTTGTTCCTGAAAAACTGTTGTAGAATATCAAAATGTTCTCTGCCTACTCAGAACCTGAATAACTACTGCAGTCAAATCGGTGACGACAGGCCTAAATCCTTCTGCCAATTTATCCCGAACTCCAAAATGCTTGTGACTGCCTCTTGATGagtccctcagtctcctctcatTGCACTGCACAGACAGGAATGGTCTTGATGGTGTTTTATATCCATAGCCATCAAATAAGCATTTGTTAGAAGAATTGTCCTTGTCGTCCTGACTTGTTTTTTGTTCTCTCTAGgagtggcctgtggaatgttcgACTTCACCCTTATCCGTACTCTTCGGGAACACCTATGTGGGGGCCATCTGTTTCCATCCTCAGGCCACAACACCTACGTGGGGGCCATCTGTTTCCATCGTCAGGCCACAACACCTACGTGGGGGCCATCTGTTTCCATCCTCAGGCCACAACACCTACGTGGGGGCCATCTGTTTCCATCCTCAGGCCACAACACCTACGTGGGGGCCATCTCTTTCCATCCTCAGGCCACTCTGACTATGGAGGACTCTGATGTTAACATGGCCTCCTGTGCTGCCAATGGCACCGTCAGACTCGAGTCTGTACAGtgatgaGCCTGTCGCTGACATCGAGGGCCACTCCTGAGGGTAGCACGAGTAGCCTGGCACCCCTGTGGACGCTTCCTGGGCACCACCTGGCCCAGGAGGAGATCCTGCACCAGGAGGGACACAGTAAAGGAGTCCACGACCTGCACTTCCACCCTGACGACTCTGTGGTAGGCACTGGGGGTCTGGATTCGTTTGGGCGTATTTGGGACCTTCGGACCGGTGCTGTGTGATGTTCCTGGAGGGCCATCGCAGAGATTTACAGCATCGACTTCTCTCCCAACAGcCAATGATGGTCACTTCATCCTGACCTGGGCCTGTGACAACACAGCCAAGGTGTGGACCCACCAGGGCGCGCCAAGAGGGCAAGGTGATGTCCCCTGACGGACAACTCATCGCCACCTGCTCCTACGACCTGCACCTTCAAACTCTGCATGTCAGAGTGAGCAGGGGAGGGAGTATCACCCATAAAAAGAGAATGGCATTCTATGGTACCTTCTATTTCTATGGTAATACCGAACTGTCATCCCATACAAATAGATCATAAAATATTAGCATTTTCACGATTGACGGATGAGTCTTTGAACATCCTAAATATTCTGAATTGTACACTTGTCTGATTTACATTTAGTAGATGGTTAAATTATTATTGAACAACAACGTTAGTCTCTTGATGTCTACAACTTTGAAGCTGTCCTTTCTCCCAGATAATTTGTTCAATAATATGTTTTAGGTGATTTGTAAACATGAGTCAGTTGGCGTCAGAAGTCGATCCTTTTGTCTAGTTTTTAATAAAAA
>TU432352
TCAACTTACCAATTAAAATGGCAGTTTTGAGTTATTGTCTTTCTGCTTGAAAACACCACATCGAAAGTTATATTTTGCATGCATTATATCCACCTCTAACCTTAGCTCAACCTCTTTTcgattttgttatttattttccaGGCTGAGGAATATCCTTTCTGTAGTGGGCCCAGATGCACTAAAGAAATCTAAGAAGGATGATGAAGGAAACTTAAATTacttctaccaaatctctatcaacatgttaaatgtgcaaccagagggaaaacatttctagatcacctgtactccacatacagagacgtgaacaaagctctccctcgccctccatttggtaaattcaaccacaactctatcctcctgattcctgcttaccgcaagcaaaaatttaagcaggaagcaccagtgactcggtctataaaaaaatggtcagatgaagcagatgctaaactacaggactgatgcttaactacaggactgctttgctatcacagactgcaagcagggcttgcaaactattacagactacaaagggaagcacagccgcgagctgcccagtgacacgagcctaccagacgagctaaatcacttctatgttcgcttcgaggcaagcaacactgaggcatgcatgagagcatcagctgttccgggcaactgtgtgatcacgctctccgtagccgacgtgagtaagacctttttaaacaggtcaacatacacaaggctgcgggccagatggattaccaggacgtgtgctctgggcatgtgctgaccaactgaccggtgtcttcactgacattttcaacatgtccctgattgagtctgtaataccaacatgcttcaagcggaccaccatagtccctgtgcccaagaacacaaggcaacctgcctaaaagactacagacccatagcactcacgtccgtagccatgaagtgctggT
>TU432351
cctcATTCCaatgttctttatttttactcttttctacattgtagaataatagtgaagatatcaaaactatgaaataacacacatggaatcaagttgcaaccaaaaagtgttaaaccaatcaaaatagaAAGTACAAGAACTTCACAAGACCCTCAGCGTATGTCCTCCATCAGTCTCCAAAATAATTCAAGGACGTCTCTTGTTCCTGAAAAACTGTTGTAGAATATCAAAATGTTCTCTGCCTACTCAGAACCTGAATAACTACTGCAGTCAAATCGGTGACGACAGGCCTAAATCCTTCTGCCAATTTATCCCGAACTCCAAAATGCTTGTGACTGCCTCTTGATGagtccctcagtctcctctcatTGCACTGCA
>TU432347
aaatactttttcccccactgtatgtgttgccaccatAGGGTCACGCACTACTCATGAAGAAAATGTTGAACATTcattattcaaaaacataaaataccgtcATACTGTCCTTTTTATTTTTATGCAGGGATATGCTATTTTGGCCATATCGTCCAGCCCTATCCTGAATGATAAATAAGTCAATCATTTGATAATGATAATAGTTATTCTCTTTTCCTGTCCCTTGGCCAGAACACCTATGTGGGGGCCATCTGTTTCCATCCTCAGGCCACAACACCTACGTGGGGGCCATCTGTTTCCATCGTCAGGCCACAACACCTACGTGGGGGCCATCTGTTTCCATCCTCAGGCCACAACACCTACGTGGGGGCCATCTGTTTCCATCCTCAGGCCACAACACCTACGTGGGGGCCATCTCTTTCCATCCTCAGGCCACTCTGACTATGGAGGACTCTGATGTTAACATGGCCTCCTGTGCTGCCAATGGCACCGTCAGACTCGAGTCTGTACAGtgatgaGCCTGTCGCTGACATCGAGGGCCACTCCTGAGGGTAGCACGAGTAGCCTGGCACCCCTGTGGACGCTTCCTGGGCACCACCTGGCCCAGGAGGAGATCCTGCACCAGGAGGGACACAGTAAAGGAGTCCACGACCTGCACTTCCACCCTGACGACTCTGTGGTAGGCACTGGGGGTCTGGATTCGTTTGGGCGTATTTGGGACCTTCGGACCGGTGCTGTGTGATGTTCCTGGAGGGCCATCGCAGAGATTTACAGCATCGACTTCTCTCCCAACAGcCAATGATGGTCACTTCATCCTGACCTGGGCCTGTGACAACACAGCCAAGGTGTGGACCCACCAGGGCGCGCCAAGAGGGCAAGGTGATGTCCCCTGACGGACAACTCATCGCCACCTGCTCCTACGACCTGCACCTTCAAACTCTGCATGTCAGAGTGAGCAGGGGAGGGAGTATCACCCATAAAAAGAGAATGGCATTCTATGGTACCTTCTATTTCTATGGTAATACCGAACTGTCATCCCATACAAATAGATCATAAAATATTAGCATTTTCACGATTGACGGATGAGTCTTTGAACATCCTAAATATTCTGAATTGTACACTTGTCTGATTTACATTTAGTAGATGGTTAAATTATTATTGAACAACAACGTTAGTCTCTTGATGTCTACAACTTTGAAGCTGTCCTTTCTCCCAGATAATTTGTTCAATAATATGTTTTAGGTGATTTGTAAACATGAGTCAGTTGGCGTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051685.1 False 1952 mRNA 0.46 6 23738704 23747312
TU432352 False 938 lncRNA 0.45 1 23737834 23738771
TU432351 False 378 lncRNA 0.38 1 23739050 23739427
TU432347 True 1273 lncRNA 0.48 5 23741825 23747278

Neighbor

gene id symbol gene type direction distance location
LOC110523463 copt1 coding upstream 3236 23713080 ~ 23735468 (+)
vatg1 LOC106567829 coding upstream 26827 23709843 ~ 23711877 (+)
LOC110522832 LOC106567816 coding upstream 60666 23623921 ~ 23678038 (+)
LOC110522830 f2rl2 coding upstream 264492 23470988 ~ 23474212 (+)
LOC110522829 LOC106567920 coding upstream 315820 23421643 ~ 23422884 (+)
LOC110523468 vamp5 coding downstream 91190 23838502 ~ 23844345 (+)
stard4 stard4 coding downstream 100906 23848218 ~ 23853553 (+)
marveld2a mald2 coding downstream 113839 23861151 ~ 23872777 (+)
oclna ocln coding downstream 126292 23873604 ~ 23883341 (+)
LOC110523472 gramd3 coding downstream 148762 23896074 ~ 23906001 (+)
G380279 NA non-coding upstream 120488 23617626 ~ 23618216 (+)
G380277 NA non-coding upstream 122451 23615857 ~ 23616253 (+)
G380258 NA non-coding upstream 133972 23604518 ~ 23604732 (+)
G379395 NA non-coding upstream 152616 23566477 ~ 23586088 (+)
G379392 NA non-coding upstream 171151 23560022 ~ 23567553 (+)
G380357 NA non-coding downstream 5909 23753221 ~ 23753477 (+)
G380363 NA non-coding downstream 14709 23762021 ~ 23762408 (+)
G380365 NA non-coding downstream 15991 23763303 ~ 23763523 (+)
G380336 NA non-coding downstream 16467 23763779 ~ 23765844 (+)
G380372 NA non-coding downstream 59902 23807214 ~ 23807936 (+)
lhfpl2a lhfpl2 other upstream 731417 22942205 ~ 23007315 (+)
G378868 NA other upstream 1109035 22602110 ~ 22629669 (+)
G378832 NA other upstream 1232434 22503752 ~ 22506270 (+)
G378660 NA other upstream 1506784 22172535 ~ 22231920 (+)
G381239 NA other downstream 940427 24687739 ~ 24776429 (+)
G382186 NA other downstream 1478130 25225442 ~ 25225730 (+)
LOC110523503 NA other downstream 2427633 26174884 ~ 26186710 (+)
LOC110522865 LOC106567246 other downstream 2690307 26437517 ~ 26502284 (+)

Expression


Co-expression Network