stard4 (stard4)


Basic Information

Item Value
gene id stard4
gene name stard4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23848218 ~ 23853553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602178.2
CATCTGACCAATAGGAACACGGAAAATATCAAACACAGGAAACGACTACACTTCTGATTGGGTGATAGAGGAGCTCTCGCATACAGGGACAGAATTTTCGCTCACCGTTTGCAGATGTGTTTACTATAAATACATGAAAACTGAACCACTATCGTAAATTGCAACACCATTCAAAGAAAGATGTCACGGTATGGAGAAAGTCATCAGAGGAGTTTCATGGCTATCTGTATAAATCCCAGGGTATGGTCGACGATAACCCCAATAGAATAGTGGATTACATACGCCCTGGGCCTTATCGATTAGACTGGGATAGTTTGATGACAGCAATGGACATAATAGAAAACCTTGATCAGggctGTTGTGTGATGAGGTACACAACTGCAGGCCAGCTGTGGAACATCATAGCTCCCAGAGAGTTTATTGATTTCTCCTACACCACAGACTACCAGGATGGACTATTGTCCTGCGGTATCAGTGTGGAGCATGAGGAGCAGCATCAGAGTTATGTCCGGGGCTTCAACCACCCATGTGGCTGGTTCTGTGTGCCCACCCCAGATAGCACCACCACCCCAGCCCAGAGCCTCCTGACAGGGTACATTCAGACAGACCTCCGGGGTATGATCCCCCAGTCTGCCGTGGACACAGCCATGGCCAGCACCCTCATCAACTTCTACACTGACCTGCGCAGGGCTCTGAAGAAGGCCTAACCAGTACTAGCCCGGTTGCCAGATTGGTTTATGCTTTAGCCAACTCTGTCGTATTTGTTGTTATACTGAATGCATGGGATGGCAAGGGAAGTAAGAGGAGTTGGCTAAAACACGTTCAAATCTGGCGACTAGGCTAAACCAGTACATCCTAACAGCACTCCTTTTTTAATACACCAGTCGATTGATCAGTCAGTCTATACTCCACCCTCATAGAGGGCTATAGAGATCCAACTCCAATTCACACCAACTCAGGGCAGGATCCAGTTTAGGTTGAAACAGGGTAGGAGTTAAAGGACATGGTCTGACCTGGTCTGCTGCTCACTGGACTTTGGAGTTGTGACTTGTTATTTGTCTGCTCTTTAAATCATTATATAATACTGAAAATTGCTACGGGATTAAGGTATTACACAAACACTGAAGCACTTGATCAAAGTCGATGTTTGCCTTTTTTGTTGATCTCTTTTGCTGATTTCGGACAAACATCGAACATACCCAACAGATTAAATCGTTGGGGGTAGATAGATAAAAAAATATAGGTAGACAGACAGCCAATACAATCAATGCAATGTTGCTTTTAGTTGAAGTTACACGTGAAAGTGTTTGCAGGACTATACATTGGAATTTGACTggcgtgtcacgccctgatctgtttcacctgtccttgtgcttgtctccacccccctccaggtgtcacccatcttcgcTATtatccctgtgtatttatacctgtgttctctgtctgtttgttgccagttGGTCTTGTTAGTTCAAGTTTATCAGCGGTTTTCCTGGCAGCGCCTAtcgtttcccagcctctctttccTCGTCatcctggtttttgacctttgcctgtcctgaccctttACCCGCCCGTCTGAcctctctgcctgaccctgagcctgcctgccgtcctgtacctttgctccacctctggattactgaactctgcctgtccctgaccctgagtccgcctgccgtcctgtacctttgccttacCCTGGAtcttcgacccctgcctgccttgacctgtctttgcctGCCCCTATTGCTACAATAAACATGGTTACTTcaaca
>XM_021602175.2
ACGGAAAATATCAAACACAGGAAACGACTACACTTCTGATTGGGTGATAGAGGAGCTCTCGCATACAGGGACAGAATTTTCGCTCACCGTTTGCAGATGTGTTTACTATAAATACATGAAAACTGAACCACTATCGTAAATTGCAACACCATTCAAAGTTGTTTTGAAAAGGATCAAAATGGGAACCTTGCAAGAACCCAGTGCTTTGACAGCCAGACTGCAGAACACTCTCATGTCTTACCATAGCCTGGATGAGAATGAGTGGAGGGTAGCCAAGAAATCGAAAGATGTCACGGTATGGAGAAAGTCATCAGAGGAGTTTCATGGCTATCTGTATAAATCCCAGGGTATGGTCGACGATAACCCCAATAGAATAGTGGATTACATACGCCCTGGGCCTTATCGATTAGACTGGGATAGTTTGATGACAGCAATGGACATAATAGAAAACCTTGATCAGggctGTTGTGTGATGAGGTACACAACTGCAGGCCAGCTGTGGAACATCATAGCTCCCAGAGAGTTTATTGATTTCTCCTACACCACAGACTACCAGGATGGACTATTGTCCTGCGGTATCAGTGTGGAGCATGAGGAGCAGCATCAGAGTTATGTCCGGGGCTTCAACCACCCATGTGGCTGGTTCTGTGTGCCCACCCCAGATAGCACCACCACCCCAGCCCAGAGCCTCCTGACAGGGTACATTCAGACAGACCTCCGGGGTATGATCCCCCAGTCTGCCGTGGACACAGCCATGGCCAGCACCCTCATCAACTTCTACACTGACCTGCGCAGGGCTCTGAAGAAGGCCTAACCAGTACTAGCCCGGTTGCCAGATTGGTTTATGCTTTAGCCAACTCTGTCGTATTTGTTGTTATACTGAATGCATGGGATGGCAAGGGAAGTAAGAGGAGTTGGCTAAAACACGTTCAAATCTGGCGACTAGGCTAAACCAGTACATCCTAACAGCACTCCTTTTTTAATACACCAGTCGATTGATCAGTCAGTCTATACTCCACCCTCATAGAGGGCTATAGAGATCCAACTCCAATTCACACCAACTCAGGGCAGGATCCAGTTTAGGTTGAAACAGGGTAGGAGTTAAAGGACATGGTCTGACCTGGTCTGCTGCTCACTGGACTTTGGAGTTGTGACTTGTTATTTGTCTGCTCTTTAAATCATTATATAATACTGAAAATTGCTACGGGATTAAGGTATTACACAAACACTGAAGCACTTGATCAAAGTCGATGTTTGCCTTTTTTGTTGATCTCTTTTGCTGATTTCGGACAAACATCGAACATACCCAACAGATTAAATCGTTGGGGGTAGATAGATAAAAAAATATAGGTAGACAGACAGCCAATACAATCAATGCAATGTTGCTTTTAGTTGAAGTTACACGTGAAAGTGTTTGCAGGACTATACATTGGAATTTGACTggcgtgtcacgccctgatctgtttcacctgtccttgtgcttgtctccacccccctccaggtgtcacccatcttcgcTATtatccctgtgtatttatacctgtgttctctgtctgtttgttgccagttGGTCTTGTTAGTTCAAGTTTATCAGCGGTTTTCCTGGCAGCGCCTAtcgtttcccagcctctctttccTCGTCatcctggtttttgacctttgcctgtcctgaccctttACCCGCCCGTCTGAcctctctgcctgaccctgagcctgcctgccgtcctgtacctttgctccacctctggattactgaactctgcctgtccctgaccctgagtccgcctgccgtcctgtacctttgccttacCCTGGAtcttcgacccctgcctgccttgacctgtctttgcctGCCCCTATTGCTACAATAAACATGGTTACTTcaaca
>XM_021602174.2
GGAAAATATCAAACACAGGAAACGACTACACTTCTGATTGGGTGATAGAGGAGCTCTCGCATACAGGGACAGAATTTTCGCTCACCGTTTGCAGATGTGTTTACTATAAATACATGAAAACTGAACCACTATCGTAAATTGCAACACCATTCAAAGGATCAAAATGGGAACCTTGCAAGAACCCAGTGCTTTGACAGCCAGACTGCAGAACACTCTCATGTCTTACCATAGCCTGGATGAGAATGAGTGGAGGGTAGCCAAGAAATCGAAAGATGTCACGGTATGGAGAAAGTCATCAGAGGAGTTTCATGGCTATCTGTATAAATCCCAGGGTATGGTCGACGATAACCCCAATAGAATAGTGGATTACATACGCCCTGGGCCTTATCGATTAGACTGGGATAGTTTGATGACAGCAATGGACATAATAGAAAACCTTGATCAGggctGTTGTGTGATGAGGTACACAACTGCAGGCCAGCTGTGGAACATCATAGCTCCCAGAGAGTTTATTGATTTCTCCTACACCACAGACTACCAGGATGGACTATTGTCCTGCGGTATCAGTGTGGAGCATGAGGAGCAGCATCAGAGTTATGTCCGGGGCTTCAACCACCCATGTGGCTGGTTCTGTGTGCCCACCCCAGATAGCACCACCACCCCAGCCCAGAGCCTCCTGACAGGGTACATTCAGACAGACCTCCGGGGTATGATCCCCCAGTCTGCCGTGGACACAGCCATGGCCAGCACCCTCATCAACTTCTACACTGACCTGCGCAGGGCTCTGAAGAAGGCCTAACCAGTACTAGCCCGGTTGCCAGATTGGTTTATGCTTTAGCCAACTCTGTCGTATTTGTTGTTATACTGAATGCATGGGATGGCAAGGGAAGTAAGAGGAGTTGGCTAAAACACGTTCAAATCTGGCGACTAGGCTAAACCAGTACATCCTAACAGCACTCCTTTTTTAATACACCAGTCGATTGATCAGTCAGTCTATACTCCACCCTCATAGAGGGCTATAGAGATCCAACTCCAATTCACACCAACTCAGGGCAGGATCCAGTTTAGGTTGAAACAGGGTAGGAGTTAAAGGACATGGTCTGACCTGGTCTGCTGCTCACTGGACTTTGGAGTTGTGACTTGTTATTTGTCTGCTCTTTAAATCATTATATAATACTGAAAATTGCTACGGGATTAAGGTATTACACAAACACTGAAGCACTTGATCAAAGTCGATGTTTGCCTTTTTTGTTGATCTCTTTTGCTGATTTCGGACAAACATCGAACATACCCAACAGATTAAATCGTTGGGGGTAGATAGATAAAAAAATATAGGTAGACAGACAGCCAATACAATCAATGCAATGTTGCTTTTAGTTGAAGTTACACGTGAAAGTGTTTGCAGGACTATACATTGGAATTTGACTggcgtgtcacgccctgatctgtttcacctgtccttgtgcttgtctccacccccctccaggtgtcacccatcttcgcTATtatccctgtgtatttatacctgtgttctctgtctgtttgttgccagttGGTCTTGTTAGTTCAAGTTTATCAGCGGTTTTCCTGGCAGCGCCTAtcgtttcccagcctctctttccTCGTCatcctggtttttgacctttgcctgtcctgaccctttACCCGCCCGTCTGAcctctctgcctgaccctgagcctgcctgccgtcctgtacctttgctccacctctggattactgaactctgcctgtccctgaccctgagtccgcctgccgtcctgtacctttgccttacCCTGGAtcttcgacccctgcctgccttgacctgtctttgcctGCCCCTATTGCTACAATAAACATGGTTACTTcaaca
>XM_021602177.2
GGAAAATATCAAACACAGGAAACGACTACACTTCTGATTGGGTGATAGAGGAGCTCTCGCATACAGGGACAGAATTTTCGCTCACCGTTTGCAGATGTGTTTACTATAAATACATGAAAACTGAACCACTATCGTAAATTGCAACACCATTCAAAGGATCAAAATGGGAACCTTGCAAGAACCCAGTGCTTTGACAGCCAGACTGCAGAACACTCTCATGTCTTACCATAGCCTGGATGAGAATGAGTGGAGGGTAGCCAAGAAATCGAAAGATGTCACGGTATGGAGAAAGTCATCAGAGGAGTTTCATGGCTATCTGTATAAATCCCAGGGTATGGTCGACGATAACCCCAATAGAATAGTGGATTACATACGCCCTGGGCCTTATCGATTAGACTGGGATAGTTTGATGACAGCAATGGACATAATAGAAAACCTTGATCAGggctGTTGTGTGATGAGGTACACAACTGCAGGCCAGCTGTGGAACATCATAGCTCCCAGAGAGTTTATTGATTTCTCCTACACCACAGACTACCAGGATGGACTATTGTCCTGCGGTATCAGTGTGGAGCATGAGGAGCAGCATCAGAGTTATGTCCGGGGCTTCAACCACCCATGTGGCTGGTTCTGTGTGCCCACCCCAGATAGCACCACCACCCCAGCCCAGAGCCTCCTGACAGGttGGTCTTGTTAGTTCAAGTTTATCAGCGGTTTTCCTGGCAGCGCCTAtcgtttcccagcctctctttccTCGTCatcctggtttttgacctttgcctgtcctgaccctttACCCGCCCGTCTGAcctctctgcctgaccctgagcctgcctgccgtcctgtacctttgctccacctctggattactgaactctgcctgtccctgaccctgagtccgcctgccgtcctgtacctttgccttacCCTGGAtcttcgacccctgcctgccttgacctgtctttgcctGCCCCTATTGCTACAATAAACATGGTTACTTcaaca

Function

symbol description
stard4 Predicted to enable cholesterol binding activity and cholesterol transfer activity. Predicted to be involved in cholesterol import; cholesterol transport involved in cholesterol storage; and intracellular cholesterol transport. Predicted to be active in cytosol and endoplasmic reticulum. Orthologous to human STARD4 (StAR related lipid transfer domain containing 4).

NR:

description
stAR-related lipid transfer protein 4 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602178.2 False 1781 mRNA 0.47 5 23848218 23853553
XM_021602175.2 False 1888 mRNA 0.47 6 23848236 23853553
XM_021602174.2 False 1873 mRNA 0.47 6 23848238 23853553
XM_021602177.2 True 1005 mRNA 0.49 7 23848238 23853553

Neighbor

gene id symbol gene type direction distance location
LOC110523468 vamp5 coding upstream 6173 23838502 ~ 23844345 (+)
LOC118964576 NA coding upstream 100906 23737834 ~ 23747312 (+)
LOC110523463 copt1 coding upstream 112750 23713080 ~ 23735468 (+)
vatg1 LOC106567829 coding upstream 136341 23709843 ~ 23711877 (+)
LOC110522832 LOC106567816 coding upstream 170180 23623921 ~ 23678038 (+)
marveld2a mald2 coding downstream 7598 23861151 ~ 23872777 (+)
oclna ocln coding downstream 20051 23873604 ~ 23883341 (+)
LOC110523472 gramd3 coding downstream 42521 23896074 ~ 23906001 (+)
LOC110523473 LOC106567744 coding downstream 52678 23906231 ~ 23929665 (+)
zmp:0000000846 LOC106567724 coding downstream 186592 24040145 ~ 24081954 (+)
G380372 NA non-coding upstream 40282 23807214 ~ 23807936 (+)
G380336 NA non-coding upstream 82374 23763779 ~ 23765844 (+)
G380365 NA non-coding upstream 84695 23763303 ~ 23763523 (+)
G380363 NA non-coding upstream 85810 23762021 ~ 23762408 (+)
G380357 NA non-coding upstream 94741 23753221 ~ 23753477 (+)
G380431 NA non-coding downstream 95040 23948593 ~ 23948796 (+)
G380433 NA non-coding downstream 99506 23953059 ~ 23953354 (+)
G380434 NA non-coding downstream 100669 23954222 ~ 23982341 (+)
G380457 NA non-coding downstream 128898 23982451 ~ 23982673 (+)
G380461 NA non-coding downstream 138526 23992079 ~ 23992280 (+)
G380340 NA other upstream 106759 23740434 ~ 23741459 (+)
lhfpl2a lhfpl2 other upstream 840931 22942205 ~ 23007315 (+)
G378868 NA other upstream 1218549 22602110 ~ 22629669 (+)
G381239 NA other downstream 834186 24687739 ~ 24776429 (+)
G382186 NA other downstream 1371889 25225442 ~ 25225730 (+)
LOC110523503 NA other downstream 2321392 26174884 ~ 26186710 (+)
LOC110522865 LOC106567246 other downstream 2584066 26437517 ~ 26502284 (+)
G383794 LOC106566282 other downstream 2808285 26661838 ~ 26663613 (+)

Expression


Co-expression Network