LOC110523493 (LOC106567525)


Basic Information

Item Value
gene id LOC110523493
gene name LOC106567525
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25473913 ~ 25482789 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602232.2
GGAAGCACTCTGGGTATAAACCTCCCTGAGAGCGTTGGACCTAAATGTTATTCAGGTGCCATAACAGGTGTGTTTTAGTATTTATGTGTGACAGGGAGAGGTGACAATACTGTCTTGACTGTGGAAAGCGGGaggagacatacagagacaggagCTGAGTCTGTATTGTAGCTACCTCTCTGGAGATATAAACTCTGATCTATAGAGCCTGTGGATTCGTTGTAGCCTGGTGCAGAGGCCTGAAACTGAGACCCATCCATCTCCATTCTGTCTCTGAAATCACAGGCAGAAGAAAATGGCCCATGGAAAGAACCAGGATGAGAGACCCTCAGAACAGGgcgaagagatgggagaggagacctTCCTCAAAGACCTCTATCTGTACATGAAGAAGAGAAATACACCCATAGAGAAAATACCACACCTGGGCTTCAAACAGATCGGTCTGTTCATGATGTACAAGACTGTGAAAAGCTTGGGTGGCTACCACCAGGTGACGGCCCAGCAGATGTGGAAGCAAGTATACAACACCCTGGGAGGAAACCCCAGAAGTACCAGTGCAGCCACCTGCACCCGTAGACACTACGAGAAGCTGCTTCTGCCGTATGAGTGTCATGTAAGAGGAGAAGACTACATGGAGGTACTGCCACAATGCCAGCAGAAGCGTTTACATTACAGTAGGCTCAGTGAGCAGGACGAGTGCCCCAGGACAGCCAAGCGTAGCATGACGTGCGGAGCTCTACAGACATCCCTGCACCAGAAGCCCCATAACTATCTGACAGACTCCAGAGTGAGGATCATCCCTATGCCTGTGCACTACAGTCAGTACTACCACCACCCTGTCCACCCCGTCCACCCAGATCTGCTCCCCTATGTCCACCCACCTCTGACCCCCAgcagcctcccctcccctcaaggacagacagagagggccaAGCAGCCTCTGGAGCGCCTACGCTTCCTGGCCAACCAGTACAAGGACTCCTCAGGCTGGACTGAGCCACTCAACCTCAGTCACAAGAAGGCTGGTCAGGAGTCAGGCGCTCACCCTGCTTCATCCTTCGCCCCTCCTCCTTCCAACATCTCCCCAAGATTCTTGAATACGGTCTCACCTCTGCACCCCGCCAAGGGGCTGGTTAAAGATGAGGGCAGTGAGACGCCGGAGGGAGAGGTTCCCCAGGGGAAAACCCACCTCTACCCCTTAGCGACCAGAGACGACTACTCCCGCAGCCCGACCTCAGCCTCCAGCCCAGGCATGAAGAAAGAGTCCCCCGTCCCCTCTCCGCTGCAGAGTTGCAGGGATAGTGCCCCCTCCATGATTCACGTCCCCAAACTCCAGAAGAGGGAGTACCCAGATTGGCCCaggggggagtggagaggggaaagCCCCAAGCATAGTCCAGGGCCTCTCAATTGTAGTCACGCTCTGCGCAGTACccccagagggacagagggaaggatggagatcCAGATCCCGCTGGCGATGCTCCATGACTGGGTAAAAGGAGTTCTGCTGTGTGGGCCTGCTGGCACCCGGCCTGGGGATCTATCGCTGCAGGATCCAACCAGGGGTCAGACCCCTGGCTCAGAGcccagggagagggaaagggcacAGGCCTGGTCTGACACCTCTCCCACCATTGCTACACATGCTGACCAGGTCTTCCACAACCATCACAAAGACCAGGACAGGGGTTCTGGGGATCTGAGAGAGAGGAGTCTGGAGAGGCACAGGAACCTGCCTaggcccaccaccaccacctcccctaGTACCAGTCAAAGCCGCCCCATGGCGCCCTACCAGTTCTCCAGCTACGAGCCTCGGCCATCAGGGAGCATCGTCCGTAACCCGGACAGCTGGAAATTGGATCCCCGGGAGGACAGCTGGAAATTGGATCACCGGGAGGACACAAGGAGGCCCTACCACCCAAAACTAATGTACCCCCAGGATCTATGGGATAGAGCCCAGCCAATTCCCTTAAATATCCACCCCAGCAGCCAGGCTCTGGAGCAGGATAGTGTACGCCACACATCCCCGGGCTATTGTCCAGGCACATCACTGGGAAGGGTGGAGAACCCGTATATGGCGCTGATGGTGAACCCCTCATTTCCCTCTCTGGTGCCACTGACACCTGAGGAGTTAATGAAGTTAAAGAGGCTCATCTCAAGCTCCTCATGAATAGAATGgaacagcaggacaacaacctgctAATTAATATAAAATATGATGCACTCAATGTTGACATTGGACACTTAAAAAGCCCTCATTACTGTTCAAAATCAAGAGACAAtgtagcactactgttgactaacTTTTTTAAGTACTTCAGAATATGAATTTAGTCCTTTAATCTTCTGTATTTTTATCATTTGAAGCTTGCTAACAATGTATTGTGCACTggagtgcaattttttttttgccCTTCATCTCAGCGGTTTGTTTTGAACATGAAGTAGCAtcgagaaaaaaaaaaatgtagcctGATAATGACAGTAAAAAAGCTTGAAACTAATTACAAAAGTGTACTACCCGGACAGCAAAGGGACATTCTATTGAGTTCTTACTTGTAATTTTGTTGAGATTTGTGacttgtacattttttttaaagaattgtTGAGAGTTGTTGTTATGCCAGTCATTCTTGTTGTTATgccacaaattcttatttacaatgacagcctaggaacagtaggttaactgccttgttcaggggcagaacaacagatttttaacttgtcagctcagtgattcgatcttgcaacctttttgttactagtccaacgctctaaccacaaggatACCTGCTGTTTTTGAGGAGAAACaattatataaaatataaaagTTACACTTTATTCTGAATTTGtgaatgtttttatatatatatatatatatatatatatat

Function

NR:

description
AT-rich interactive domain-containing protein 5A-like

GO: NA

KEGG:

id description
K11771 SWI1, ADR6; SWI/SNF chromatin-remodeling complex subunit SWI1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602232.2 True 2903 mRNA 0.50 6 25473913 25482789

Neighbor

gene id symbol gene type direction distance location
aqp3b LOC106567539 coding upstream 49687 25419705 ~ 25424226 (+)
trnaa-ugc-10 NA coding upstream 754482 24719360 ~ 24719431 (+)
trnaa-ugc-9 NA coding upstream 769127 24704715 ~ 24704786 (+)
LOC110523483 LOC106567618 coding upstream 829901 24635703 ~ 24644012 (+)
LOC110523479 srek1 coding upstream 1000308 24432802 ~ 24528819 (+)
LOC110523494 NA coding downstream 46120 25528909 ~ 25561013 (+)
cacna1b cacna1b coding downstream 190111 25672900 ~ 25793763 (+)
LOC110523500 LOC106567252 coding downstream 386954 25869743 ~ 25938520 (+)
LOC110522854 LOC106563131 coding downstream 469305 25952094 ~ 25955508 (+)
whrna LOC106567256 coding downstream 512859 25995648 ~ 26149621 (+)
G382504 NA non-coding upstream 16252 25457260 ~ 25457661 (+)
G382497 NA non-coding upstream 20819 25452872 ~ 25453094 (+)
G382478 NA non-coding upstream 24343 25442759 ~ 25449570 (+)
G382476 NA non-coding upstream 38106 25435538 ~ 25435807 (+)
G382341 NA non-coding upstream 135578 25338105 ~ 25338335 (+)
G382598 NA non-coding downstream 141324 25624113 ~ 25624865 (+)
G382670 NA non-coding downstream 292811 25775600 ~ 25775817 (+)
G382673 NA non-coding downstream 299607 25782396 ~ 25782611 (+)
G382186 NA other upstream 248183 25225442 ~ 25225730 (+)
G381239 NA other upstream 697484 24687739 ~ 24776429 (+)
LOC110523468 vamp5 other upstream 1629568 23838502 ~ 23844345 (+)
G380340 NA other upstream 1732454 23740434 ~ 23741459 (+)
LOC110522832 LOC106567816 other upstream 1836822 23623921 ~ 23678038 (+)
LOC110523503 NA other downstream 692156 26174884 ~ 26186710 (+)
LOC110522865 LOC106567246 other downstream 954830 26437517 ~ 26502284 (+)
G383794 LOC106566282 other downstream 1179049 26661838 ~ 26663613 (+)
LOC110522888 LOC106566402 other downstream 2192563 27675352 ~ 27719165 (+)
G385053 NA other downstream 2223925 27706714 ~ 27707078 (+)

Expression


Co-expression Network