cacna1b (cacna1b)


Basic Information

Item Value
gene id cacna1b
gene name cacna1b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25672900 ~ 25793763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124629.1
GTCTTCAGGTAGTTTTGAAGTCTATCATGAAGGCCATGGTGCCTCTGCTCCAGATAGGCATGCTGCTCTTCTTCGCCATACTCATGTTTGCCATCATCGGAGTGGAGTTCTACATGGGCAAGTTCCACTCCACCTGCTTCACTGATCCAGGAGAGCGAGCAGCAGCGTTCCCCTGTGGTACGGAGGCCCCAGCCAGGATGTGTCCTAATGGTACAGAGTGTACAGAGTATTGGATCGGCCCCAACTACGGCATCACCAACTTTGACAACATCCTGTTTGCCGTGCTCACCGTCTTCCAGTGCATCAccatggagggatgggtggacaTCCTCTACAATgcTAATGATGCCTCGGGGAACACCTGGAACTGGCTCTACTTCATCCCCCTGATCATCATCGGATCCTTCTTCATGCTCAACTTGGTCCTGGGTGTCTTATCAGGggAGTTTGCCAAAGAAAGAGAGCGTGTGGAGAAGAGGCAGGACTTTCTAAAGCTGCGCAGACAgcagcagatagagagagagctgacAGGATACCTGGAGTGGATATGCAAGGCAGAGGAGGTGctgctggaggaggaggatgagaacgCGGAGGAGAAGTCCCCTCTGGACGTGTTGAAACGTGGCAAGGTAAAGAAGAGTAAGAATGACCTGATTGGTGCTGAGGAGGGAGAGGATCACTTCACTGACATGTCCTCTGTTGCCCCCCCAGGCTCTCCGTTTGGCCGAGCCAGTGTGAAGAGCAGTAAGCTGGAGAGCTCGTCCTACTTCCGCCGCAAGGAGAGGAGAATGCGTTTCTTCATCCGTCGCATGGTCAAAGCCCAGAGCTTCTACTGGATAGTACTATGTCTGGTGGGCCTCAACACACTGTGTGTGGCCATCGTCCACTACGACCAGCCTGAGTGGCTCACCACTGCCCTCtACCTGGCAGAGTTTGTGTTCCTGGGTCTGTTCCTGTCTGAGATGAGCCTGAAGATGTATGGCCTGGGAGCCAGGAACTACTTCCATTCCTCTTTCAACTGCTTCGACTTTAGTGTGATAATAGGGAGTATACTTGAGGTGGTGTGGTCTATAATCAAACCAGGGGCATCCTATGGCATTAGTGTGCTGAGGGCTCTTCGTCTGCTCAGGTTATTCAAATTTACCAAGTACTGGAACTCCCTGAGGAACCTGGTAGTGTCTCTTCTCAACTCAATGAAGTCCATTATCAGCttgctcttcctcctcttcctcttcatcgtTGTCTTTGCCCTGCTGGGCATGCAGCTCTTTGGAGGACAGTTTAATTTTGAAGAGGAGACGCCGACGACCAACTTCGACACTTTCCCGGCGGCTATTCTCACCGTCTTCCAGATTTTGACTGGCGAGGATTGGAATGCAGTAATGTATCATGGTATTGAGTCCCAGGGGGGCGTACGGCGGGGGATGTTCTCCTCGGTCTACTTCATCGTCCTCACACTCTTTGGAAACTACACGCTCCTGAATGTCTTCTTAGCTATCGCCGTCGACAACCTCGCCAATGCACAGGAGCTCACCAAGGATGAGGAGAAGCAGGAGGAAGAAGCCAATAAAAAGCTGGCCCTGCAGAAGGCCATGGAGGTGAAGGAGGTCAGCCCCATGTCAGCAGCCAACATCTCTATCGCTGCttttgtaaaGCAAAATCGAGATGCACGCTCTCGCAGCTCGTCCGTCTCCAGCGTGCATTCACCTAAGGAGCAGCAGAGAGCCAATAAGATAATGTCAGTGTGGGAGCAGCGCACCAACCAACTGCGTCGAAACAACCTGAGAGCCAGCTCCGAGGCTCTGTTCAACGAGCTGGACCCCGAGGAACGTCTGCGGGTCTCCTCCGCCCTCCACCTGCGCTCCGACATGAAGACCCACAACGACCGCCCCCTAGTGGTGGAGCCAGGTAACGGGGACAATCCCCGACCCCCCGAGGAGGACAGAGACGGAGCAGACCCCCAGCAAGAGGGAGGAGAGCCCCACGGTCCACAGCCACGCAAGCACTACCGTCACCGGGAGAGGAACGGGGAGATTGGGGAGAGCAGGCATCACACCCACCACAGCCGCAGTAGGGACCACTACCACCCAGACGGGCCCCGGTCCAAAGAGGGCAAGGTGGAGAGGAACCATAGTCGAGAGGGGGGGCAGGGCCACAGGCACCATCACCAGGCTGAATCCCCAGAGGAGGGGGTTAacggagggggagagggaagggaagaccGCCACCACCACTCCGACAGACAGGGGAACAGGGCCCTGGCTACCAGGGACAGACTGGAGAGCAGGGGCCGGGGCCACAGGGAAGAGAACGGAGAAAGGAGGAAGCACCGCTCACGCAGAGTCAGGGCCCAGTCAACACTGGATGGAGACGAGTGCAGAGAGAacggagagagaaatggagacgGGGACCAAGGACACAGGGACAGGCAGACCGACTCTCAAGGGGAGAGCTTGGCCACCAGTCCTGTGCAGCCTCCTGCAGGTCTGCAGGCTGGAGAGAAGCAAGAGGATGCTGACAACCAGAAGAACAGCCACagagccagccaggcaggccTGAACAGCAACACTGTCCACATCCCTGTCACCATCAACGCCCCATCCAGAGAGACCACCATCATACCCATGGATAACATAGACTGTGAGAGCCTCCCCCTGAACAAGGAGAAGAAGGACTTGGAGGAGGAGCTGAAGAACGGCCCCAAACACATTCTCCCCTACAGCTCCATGTTTGTGTTTGGACAGACCAACCCGGTGCGTCGGCTGTGCCACTACGTGGTGAACCTGCGTTACTTTGAGATGTGTATCCTGTCGGTCATCACCATGAGCAGCATAGCCCTGGCTGCTGAAGACCCTGTGCAGGCCAATGCACCACGCAACAACGTGCTCAAGTATCTGGACTACGTCTTCACAGGAGTGTTCACCTTTGAGATGGTGATTAAGATGATAGACCTGGGACTGCTCCTTCATCCTGGTTCTTACTTCCGGGACCTGTGGAACATCCTGGACTTTATTGTGGTCAGTGGAGCTCTGGTGGCGTTCGCCTGCTCAGGAACTAAAGGCAaggacatcaacaccatcaaGTCTCTCAGGGTGCTGCGAGTTCTAAGGCCTCTGAAGACCATCAAACGACTGCCAAAACTCAAGGCCGTGTTTGACTGTGTGGTCAACTCTCTGAAGAACGTGCTCAACATCCTCATTGTCTACATGCTCTTCATGTTCATCTTCGCTGTGATCGCTGTGCAGCTGTTCAAGGGCAAGTTCTTCTACTGCACCGACGAGTCTAAAGGTCTGGAGAAGGactgcagGGGTAAGTTTCTGGACTATGACGGTGATGAAGTGGCGGCCCAGGATCGTGAGTGGAGGAAGTATGAGTTCCATTATGACAATGTGCTGTGGGCCTTCCTCACCCTATTCACCGTCTCCACCGGGGAAGGCTGGCCAATGGTCCTAAAGCATTCTGTGGATGCCACCTATGAGGATGAGGGTCCCAGCCCAGGCTTCCGTATGGAGACCTCTATCTTCTATGTGGTCTACTTTGTGGTCTTTCCCTTCTTCTTTGTCAACATCTTTGTGGCTTTGATCATCATCACCTTCCAGGAGCAGGGAGACAAGGCCATGTCAGAGTGTAGTCTGGAGAAGAACgagAGAGCTTGTATCGACTTTGCCATCAACGCCAAGCCTCTGACGCGCTACATGCCAGCAGACAAGCAGTCGTTCCAGTATAAGATGTGGCAGTTTGTGGTGTCGCCGCCCTTTGAGTACTCCATCATGACCATGATCGCACTCAACACTGTGGTGCTGATGATGAAGTTTCACGGTGCTCCGGAGCTGTATGAGGCCATGCTGAAGCACCTGAACATTGTGTTCACAGCTCTCTTCACACTAGAGTGCATCCTCAAGATCATCGCTTTCGGACCACTGAATTACTTGAAGGCAGCTTGGAACGTGTTTGACTTTGTGACAGTATTGGGGAGTATCACAGACATCTTGGTCACAGAGATTAAGACGGACAAGCTGATCAATCTGAGTTTCTTGAGGCTGTTCAGGGCGGCCAGGCTCATCAAGCTGCTGAGGCAGGGCTACACCATTCGCATCCTACTATGGACCTTTGTCCAGTCCTTCAAGGCCCTACCTTACGTCTGCCTCCTCATCGCTATGCTCTTCTTCATCTACGCCATCATCGGCATGCAGgtgtttggaaacaTTGAGCTGAATGAGGAATCAGCCATCAATCACCACAACAACTTCCAGACCTTCTTCCAGGCTCTGATGCTTCTGTTCAGGAGTGCAACAGGTGAGGCGTGGCATGAGATCATGCTGTCGTGTCTGAGTAACCGTCCGTGTGATAAGCTGTCAGGGTCCGGAGGGAAGGAGTGCGGCAGTGATTTTGCTTACTTCTACTTTGTCTCCTTCATCTTCCTCTGCTCCTTTCTGaTGCTCAATCTGTTTGTGGCggtcatcatggacaactttgaGTACCTGACCAGAGACGCCTCTATCCTGGGGCCTCACCACCTGGACGAATTCATCCGTGTTTGGGCCGAGTACGACCCTGCTGCCTGTGGCCGTATGACCTACCTCGATATGTACGAGATGCTCCGTCACATGTCCCCTCCACTAGGTTTGGGAAAGAAATGCCCGCCCAGAATCGCCTACAagCGATTGGTTAAGATGAACATGCCCATTGCTGATGACAACACGGTGCACTTCACGTCCACTCTGATGGCGCTCATCCGCACTGCTCTGGAGATCAAACTGGCGTCTGGAGTCCTGGCCCAGCGTCTGTGTGACGCTGACCTGAGGAAAGAGATCTCCAGAGTCTGGCCCAACCTGCCTCCGAAGACTATCGACCTGCTGGTCACACCATATAAAAATGATGAGTTCAATGAGCTTCTTTGCCCCTTTGCGGTTGTAAACCGAGAGCTGACAGTGGGGAAGGTCTACGCTGCCCTCATGATCTTTGACTACTACAAGCAGAACCGGGCCAAGAGACTGGAACAGCAACTGGGACTGGACTTCACAGGGACAATTAAGAATAAAAAGGGCCCAGCCTTCTTCCGCCCCATGCCCATGACCCATATGCAGGAGGAGGGGACAACAGTCGCCGGAGCCAATCCCCTGCCATCCTCCCAACCTGAACCAGAGTCTCAGCCAGAGCCCACGCCATCCACCACCTCTCTAACCAATGGGGAAGCAGTACCAAGCACTAGAAGTCCCATAAAAGAGTCAGGAGAGCAACTGTCTCAGGAGGGCCAACGGTCCAGCAGTAGAAAAAGGATTCTACAGAGGGGCCAGTCAGAGGATGTGCCCTACTCCAACAAACCTCAGGAATCAGTGGAGATGAGGCAGGTGGAGAACGGTGCTGATATAGGGGGCTACTTTGGTCTGGAtggccatggcagagcagccTCCATGCCAAGACTGGACTCCCAGTACAATCGGAACCACCCTCGTCACCTACCTGGGACCTACCTGGCAcctattgctgaCATCAGTCCTATTAGGCGGTCGGCTTCCACGTTGGCTTCCCAGTGCCACCGGGAGATGAGTCTGAGAGACTACACCCTGGAGCGGCCCAGCCAAGCCCAGGCCTCCTCAGCCCCAGGTCAAGCCCAGGACAggccccaccaccatcaccaccatcgcTGTCACAGACGCagggacaaggacagggacaAGAAGCAGAAGTCACTTGACAGGGCAACCAGCGTTCAGCCTTCTAGTACAGCATgTTCGTCTGTTGACCCCCCTGTGGAGGGCTTGACCAGAGAGCGGGCGAGGGAGTGTGACCGCGGCCGGCCTCATGAGAAGAGGCACCACTCTGCAGCCGGGGAGACGAAGCGTTACTACTCCTGTGAGCGCTACGTAGGCAGGGAGCACTGCCACACCAAGTCAGCTGGCCCCAGCCGCTCCACCTCCCCTGGAGAGACCCACGACCTAGGCCTCTTGAAGCAGAGTATCAGGATGAGTAAAGGCAGCCAAGTGGTCCTAACCTTTGGATCTAGCCCATCCTGCCGTGGGCGCAGACAGCTCCCCCAGACCCCCCTGACCCCCCGCCCCGCCGTGGCCTACAAGACTGGAAACTCCTTGCCCATGCAGTTTGGTTCCACAGGGCACCAGTCCTTTCTCAGTCGTGGACTCTCGGAGCGTAACGCCCTGCTGGAGTCACCCCCCATACCCGTCACCCTCATTGGCTTAGACCCAAACCTGAGCCCCTGTCCGCGGAACGCCCCACCATGCAGACTCCCTGAGGAGCCTGACGACTTCCAGGATGCTGTGAGCAACCATGGAGGGAGCCACTCCCCTAGGATCATTGCCTCAGCCTCCCATGGGGCTGCCGGGCCCTCTTCTGCACCTGCCCCACAGGGCCGGGTTGGGATCCCAAACGGGTACCACTTCACTCTTGGGGTCAATGCCGTTTCAAGCTCCAGCCCCAGAGGGACTGGGAGTTTTCGTGAGAAGGAAGAGGATGACTGGTGCTAGTGTAGCATAGCGTGGTTTAGCTAACATCCCCCACCACATATCTGGAAGCGTTTTAGCTTGAACGTTGATGAACTCGCTCATCTTTTAAACAGATGATAGTACAGTTTTGTTGTTTCCTGTGTGCTCTTAGGTGGCCAAGGGTATGCTCAAAGATGTGTAAGACATTGAAAAATTACTCTGAAAAGGAAAATCATTCCCGTTTTTGTGATGTTTTCTCTTTTCTACGCAAAGGACACTAAAGGACAAAGGACACCTGCTATGACATTTTCTCAATTCCTTTCTTGCACTGAAATTAAAGCTTATTTCGATAGTGTGCATAGTCCAGAGGACATGTGAAGTCCCTCTTGA
>TU434815
GGCCAAGGGTATGCTCAAAGATGTGTAAGACATTGAAAAATTACTCTGAAAAGGAAAATCATTCCCGTTTTTGTGATGTTTTCTCTTTTCTACGCAAAGGACACTAAAGGACAAAGGACACCTGCTATGACATTTTCTCAATTCCTTTCTTGCACTGAAATTAAAGCTTATTTCGATAGTGTGCATAGTCCAGAGGACATGTGAAGTCCCTCTTGAGtatttgaccttgtttttttttattagatGAAAAAAAAGCCAAAATGTCTTCCTACTGTCTGTGGGGGAAAACAACTAAGACTTTAAACAGTGTTTCTCTGCAGGATTGAGCAGAAACATCTTTATTTCACCCTATATTCCAATTTTAAAATGGGGCTACATACTATTGCTGTCTAAAGGACAAAACACACTGTGCTGTCATACGGCTAAAAGCAGCTGGTGGCCTATCGCCTCTGACCACAGACCATCGGCCACCATTTTCTACACAATGAATAGCCAATGTTCTTTGACACCCAGAAGGTGATCTACTGCGTATggtgtgtgttttcctttcatGTGTCTGCTGGGTCTGGAAGTAAAATGAGAGGAACCAGGAGGCACAAGTGGTGATAAAAATGCATTACCACTCaaatcccctccctctctgcaaAAAATCTAGTATCTCTTTTACTCTTTTTACACAAGCTTTCGGTATTACATAAACATACATAAGGATAGTATAGGATAGTATAAGTAGGTCTAGTATTGCTGCTGTTTTTCCATGTAACCCATGACATGTTGAGCCatttctcaacaacaacaaaaacacaggaCTGAAGATTCTAATATATTTTCTATGGAACTATAACAATAGATGGAATATATTTTCAGGATGTTCATTATTTTGTGAGTTGTACCTAGTGTAAGTGATGAGTGTAGTGTTTCTAATCAGCTGTTTCTAACGTATTGCTCTAGTGGCTGAATACCAAGTGCCTATCATTAAA

Function

symbol description
cacna1b Enables high voltage-gated calcium channel activity and protein C-terminus binding activity. Involved in modulation of chemical synaptic transmission and response to amyloid-beta. Predicted to be located in dendrite; membrane; and neuronal cell body. Predicted to be part of voltage-gated calcium channel complex. Predicted to be active in Schaffer collateral - CA1 synapse and glutamatergic synapse. Implicated in Lambert-Eaton myasthenic syndrome and dystonia 23. Biomarker of multiple sclerosis.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124629.1 False 6836 mRNA 0.54 45 25672900 25792999
TU434815 True 980 lncRNA 0.38 1 25792784 25793763

Neighbor

gene id symbol gene type direction distance location
LOC110523494 NA coding upstream 111887 25528909 ~ 25561013 (+)
LOC110523493 LOC106567525 coding upstream 190111 25473913 ~ 25482789 (+)
aqp3b LOC106567539 coding upstream 248674 25419705 ~ 25424226 (+)
trnaa-ugc-10 NA coding upstream 953469 24719360 ~ 24719431 (+)
trnaa-ugc-9 NA coding upstream 968114 24704715 ~ 24704786 (+)
LOC110523500 LOC106567252 coding downstream 76744 25869743 ~ 25938520 (+)
LOC110522854 LOC106563131 coding downstream 159095 25952094 ~ 25955508 (+)
whrna LOC106567256 coding downstream 202649 25995648 ~ 26149621 (+)
LOC118964579 LOC106567353 coding downstream 369084 26162083 ~ 26166903 (+)
LOC110523503 NA coding downstream 381885 26174884 ~ 26186710 (+)
G382598 NA non-coding upstream 48035 25624113 ~ 25624865 (+)
G382504 NA non-coding upstream 215239 25457260 ~ 25457661 (+)
G382497 NA non-coding upstream 219806 25452872 ~ 25453094 (+)
G382478 NA non-coding upstream 223330 25442759 ~ 25449570 (+)
G382652 NA non-coding downstream 1102 25794101 ~ 25795410 (+)
G382689 NA non-coding downstream 13738 25806737 ~ 25815563 (+)
G382795 NA non-coding downstream 187402 25980401 ~ 25980628 (+)
G382895 NA non-coding downstream 322026 26115025 ~ 26471390 (+)
G382811 NA non-coding downstream 359626 26152625 ~ 26153458 (+)
G382186 NA other upstream 447170 25225442 ~ 25225730 (+)
G381239 NA other upstream 896471 24687739 ~ 24776429 (+)
LOC110523468 vamp5 other upstream 1828555 23838502 ~ 23844345 (+)
G380340 NA other upstream 1931441 23740434 ~ 23741459 (+)
LOC110522832 LOC106567816 other upstream 2035809 23623921 ~ 23678038 (+)
LOC110522865 LOC106567246 other downstream 644620 26437517 ~ 26502284 (+)
G383794 LOC106566282 other downstream 868839 26661838 ~ 26663613 (+)
LOC110522888 LOC106566402 other downstream 1882353 27675352 ~ 27719165 (+)
G385053 NA other downstream 1913715 27706714 ~ 27707078 (+)
G382673 NA non-coding upstream 10173 25782396 ~ 25782611 (+)
G382670 NA non-coding upstream 16967 25775600 ~ 25775817 (+)

Expression


Co-expression Network