LOC110522854 (LOC106563131)


Basic Information

Item Value
gene id LOC110522854
gene name LOC106563131
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 25952094 ~ 25955508 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601319.2
GCCATGATCGAGGCGGACCAGGCTACAGAACGCCCACCCTCTGCACATGAGAAGGATACAGCTGTGCCCGCTGTACTAATCAACCCTGAGGACGCTGCCCCACTGGCACGAGTTTGAGGAGGCGAGGAAGTGGGTGGAGACTGAGTTGTTGATCTCTAAGAATATGGACGTTAACCTGTTTGAGAGCACCATCCGGATTGTGGGAGTCATGCTGAGCACCTACCACCTGGCTGGGGATGAGATGTTCCTGGAGAAGGCTAAAGATATTGGGTTGAGGTTGATCCCTGCCTTCAAAACCCCCTCCAAGATCCCCTTCTCTGATGTGAACATTGGGAAGGGCACGGCCCACACACCTCGCTGGATGTCCGACAGCACCCTGGCCGAGGTCACCAGTGTCCAGCTGGAGTTCAGAGAGCTCAGGCGTCTTACCCACGACCCTCAGTGCCAGGAGGTGGTGAATGAGGTGATGAGGCTGATCCATAAGCTGCCAGGGAAACATGACGGCCTGGTGACAATGTTCATCAACACCAACAGCGGCTTGTTCAGCCACAAAGCAGAGTTCACCCTGGGGGCCTGGGCAGACAGCTACTACGAGTACCTGCTCAAACAGTGGATACAGAGAGGCAAGACTGAACCAGAGTTAGCACCTTTCTATTCTGTTTGCAAATTCCTGGatatcctggttggaggattccagaTTTCTTGCTTATTCCCTTGATTTCTTAAACCTGGGAGTTAAAGAAATGTTGCATTCTACTGTATATTTGGTTCAATCAGATCACATTCGCGTTGAGGAGACTTGTCTTGCAGCATTACAGATAAACTAATAGAGATGTATGGGTGTGTTATGCTCAGTCTGTTGGAGGACTACCTAGAGACAGTGGAGGGGGTAAAGAAGCACCTCCCGAGAACCACGGGCCCCAGCAAGCTGACCACAACCGCTTCAACACTAAAATGCCTGCAGACAGACACAACTTTCTGAGACCAGAAATAGTGGAGAGTCTGTTCTACCTGTACAGATTCACTCAGGAAACTAAATAcagagactgggactgggacattCTAGAGAGCTTCAACAGATACACCAGGGTGAGTCCAATGTCTTACGCCAGATAGCACAACAGTTCTCTCTGGACTGATCTGTCTGATAACTTGCAAACTTTTATTGGATAGATCAAAAGTCATTTGGCAACAATATGCTGCATAACATTAGAAAATGTTACTAAAGTGACTTTGTCTAACAAACCCCCTGACAGTCAGAATTTATCTTAACAAAACTATAAACCTGTAGGCAATTTTTACGTTTTCTTAACTACCAAATTCTACATCAA

Function

NR:

description
endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601319.2 True 1331 mRNA 0.48 5 25952094 25955508

Neighbor

gene id symbol gene type direction distance location
LOC110523500 LOC106567252 coding upstream 13574 25869743 ~ 25938520 (+)
cacna1b cacna1b coding upstream 159095 25672900 ~ 25793763 (+)
LOC110523494 NA coding upstream 391081 25528909 ~ 25561013 (+)
LOC110523493 LOC106567525 coding upstream 469305 25473913 ~ 25482789 (+)
aqp3b LOC106567539 coding upstream 527868 25419705 ~ 25424226 (+)
whrna LOC106567256 coding downstream 40140 25995648 ~ 26149621 (+)
LOC118964579 LOC106567353 coding downstream 206575 26162083 ~ 26166903 (+)
LOC110523503 NA coding downstream 219376 26174884 ~ 26186710 (+)
LOC110523506 LOC106567292 coding downstream 281796 26237304 ~ 26276613 (+)
LOC110523505 LOC106567281 coding downstream 329699 26285207 ~ 26309671 (+)
G382689 NA non-coding upstream 136531 25806737 ~ 25815563 (+)
G382652 NA non-coding upstream 156684 25794101 ~ 25795410 (+)
G382673 NA non-coding upstream 169483 25782396 ~ 25782611 (+)
G382670 NA non-coding upstream 176277 25775600 ~ 25775817 (+)
G382795 NA non-coding downstream 24893 25980401 ~ 25980628 (+)
G382895 NA non-coding downstream 159517 26115025 ~ 26471390 (+)
G382811 NA non-coding downstream 197117 26152625 ~ 26153458 (+)
G382815 NA non-coding downstream 211694 26167202 ~ 26168148 (+)
G382925 NA non-coding downstream 235526 26191034 ~ 26199874 (+)
G382186 NA other upstream 726364 25225442 ~ 25225730 (+)
G381239 NA other upstream 1175665 24687739 ~ 24776429 (+)
LOC110523468 vamp5 other upstream 2107749 23838502 ~ 23844345 (+)
G380340 NA other upstream 2210635 23740434 ~ 23741459 (+)
LOC110522832 LOC106567816 other upstream 2315003 23623921 ~ 23678038 (+)
LOC110522865 LOC106567246 other downstream 482111 26437517 ~ 26502284 (+)
G383794 LOC106566282 other downstream 706330 26661838 ~ 26663613 (+)
LOC110522888 LOC106566402 other downstream 1719844 27675352 ~ 27719165 (+)
G385053 NA other downstream 1751206 27706714 ~ 27707078 (+)

Expression


Co-expression Network