LOC110523504 (LOC106567272)


Basic Information

Item Value
gene id LOC110523504
gene name LOC106567272
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26191030 ~ 26231833 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977142.1
GCTCTGCAGCGATGTGAGGTGTGCACATTCGGTCGAGCAGAGAAACGAGAGGAATACtgcgagggagaaagagggagtcaAAGGGAGAGATTGAGAATACGGTCAAACACACAAGAGCATCATGGCACCCATAGGACTCAAGGCGGTGGTTGGTGAAAAGATTATGAATGATGTCATCAAGAAGGTGAAGAAGAAGGGGGAATGGAAGGCGCTGATTGTGGACCAGCTGAGCATGAGGATGCTGTCCTCCTGCTGCAAGATGACAGACATCATGTCAGATGGCATCACCAttgtggAGGACATAAACAAACGGCGAGAGCCTCTTCCCACCCTGGAGGCCATTTACCTGATTACCCCCACGGACAAGTCTGTGCAGACCCTGATTGGCGATTTCAAAGACCCCCATTCAGCCAAATACAAAGCAGCCCACGTCTTCTTCACTGACTCCTGCCCCGACCCACTGTTCAACGAGTTAGTAAAGAGCCGTGCTTCCAAATCCATCAAGACCCTGACTGAGATCAACATCGCCTTCCTGCCCTACGAATCACAGgtgtacTCTTTGGACAACCCGGATGCCTTCCAGAGTTTCTACAGCCCCCATAAGACCCAGCTGAAGAACCCAGTGATGGAGAGGCTGGCAGACCAGCTGGCCACCCTGTGTGCCACCCTGAAGGAGTACCCCGCTGTTAGATACCGAGGtgAGTACAAAGACAATGCCACCCTGGCCCAGCTGTTGCAGGACAAACTGGATGCCTACAAGGCTGATGACCCCACCATGGGAGAGGGTCCTGATAAGGCTCGTTCTCAGCTGATCATCCTGGACAGGGCATTTGACCCCGTCTCCCCTGTCCTGCATGAGCTCACCTTCCAGGCCATGGGCTACGACCTGCTGCCCATCGAAAACGACGTCTACAgataTGATTCCCCTGGGATGGGAGACACTTCTCAGAAGGAGGTCCTGCTGCATGAGGATGATGACCTGTGGGTGGGGCTCAGACACAAACATATCGCTGAGGTGTCCACGGAGGTGACACGCCAACTGAAGGACTTTTCTGCTAGCAAGAGGATGAACACTGCTGGAGAGAAGACCACCATGAGGGACCTCTCTCAGATGCTGAAGAAGATGCCTCAGTACCAGAAGGAGCTGAGCAAGTACTCCACTCACCTGCAGCTGGCTGAGGACTGCATGAAGCACTACCAGGGCACAGTGGACAAGTTGTGTCGTGTGGAGCAGGACCTGGCCATGGGTACAGACGCTGAGGGGGAGAAGATCAAGGACCCCATGAGGGCCATCGTGCCCATCCTGCTGGATGCCAATGTCACCACGCACGACAAGATCCGCATCATCCTCCTTTACATCTTCCTCAAGAACGGCATCACGGAGGAGAACCTGAACAAGCTCATCCAGCATGCTCAGATCCCACCTGAGGACAGTGAGATCATCACCAACATGGCCCACCTGGGTGTGCCCATCATCACAGATtcCACCCTTCGCAGAGGAAAGAAGCTGGACAGGAAGGAACGTGTGAGTGCGCAGACCTATCAGCTGTCTCGCTGGACACCACTGGTCAAGGACATCATGGAGGATGTTATTGAAGATAAGCTGGACACCAAGCACTACCCCTACATCTCTACCCGCTCCTCTGCCTCCTTCAGCAGCACTGcagtcagTGCCCGTTATGGCCACTGGCACAAGAATAAGACCCCAGGCGAGTACCGCACCGGGCCGCGCGTCATGGTCTTCATCATCGGAGGCGCGTCCTTCAGCGAGATGCGCTCTGCCTACGAGGTCACGCAGGCCAACGGGAAGTGGGAGGCTATCATTGGTTCcacccacaccatcacccccATCAAATTCTTAACGGACCTGCAGCACCCTGACTTCCGAGAGTCCACTAGGGTGTCCTTTGAGGAGCCAGACGCAGGCTCAGacgagtgagacagacagagagagggagggagggagagagaaatcacACTCTGACAAAGATCAACCCACGTCTTCACCCCCACCGCCCTCCTGGAACAGCTCAAGACCATGAACAAACCAGATGAGGAACCAGCAAGCTAAAACCACCCAGCCCCATCTATCTATCTCCTTTCCTCTACCCTACACACCCCCCAGTCATCCTCCCAGTCATCCTTCATGAATTGTGGAAACATCTCATCTTGCACGAGAAGAATAAGAATATAAAACAATGATAGCATTggtgaaaaaaatatatgttgaaACAGAAATAAAATCATGTTGCAAGTATTCTCATGTTTTACAATGGATGCaaataacagaacttatttaaaaaatgtttaaatatcAACTAAGGTAATTTGAAACTGAAAGTACCAAATGTAATATTGTATGCTATGAAACCTGCTAGAATGTGTAAAACGTAGAGGTTCTCTCTGTTTGTTCCCTCAGTTTATCTTATTGGTGTGATTTCTATTGGTAGTGGGTGGAGGAGGGATGCCTTACTTGAGTTGGTTGGCACTAGGAAAGTCAATGCAGTAAGATCATATCACTCAACATGCAATATAACTCATCCCTGTCCTATTAGGGGGAGAATCCTAGCTGGTCAAGACATTTGTATCAGTAGCATACAGGGATGGAACCTAAGGATTTTGGGCACTGACCAGCCAGGCTAGAAGACCGCAATTTTTACTAGTCCAAAATCTGTGCCATGCGATATTTGAAAATACAACATTTCACTAGCCGTTGGACTAGTTGGGCACATTTTCTACTAGCCCGGTCTGAAAAGTACTAGCCATAGGCTAGCAGGCTAGCTTAATTTCCATCCCTGATAGCATGCCTGAACATTGTGTGGACTGTTACTGTATATCCTTTAGTATGGCAATACTGAGAACAAGCCACCCAAGAGATCCTTCAGTGCTCTCTGTGAGTTAGACAGTAACAAACAGCCAAACTGACCCTAGGTCTGAGGATAGAGAAAAACGGGACTCTGTAAATAGCTACAGAATGGTAGAAGCATCCTTCCTCCAGCCATAAGACTGGAACTATTTACTCACCACATCCTTTTCCTTTTCTCTGGAGAGATTTCACGGTTGAGTGTCAAAAGGCCATTGCTTGCAGATGTTTAAAGAATAATCATAAAGGGCCGATTTGTATTTCAGTATTGTATCCTGTCACATTGTAAGTCTTATCATTGGTTAGTATCAAAATGTTTAACCGGGTCATTCACTGAGTAGTGTGTTGTGTATATGCCATATGTTGATGTTTTAGTGTCCCACTGTTGACTGGTGATGTTTCTGACTGTGCAGTAGTAAAAGATTTCCTTTAAAAAATGCCAATGTGAAGTCACGTGTTTGTGATGTTTTAGCTGTAGCTGTAGTGGTCAACAGGGAAAAGAACTAATATCTATATTTTGTTTGTCTGTCCGTTTTATCTTCTGGTGCATTTTAACTCTTCCAATGGTGAATGGCTTTGCAAAAGAAAATGTAACCCCGATATTTCTATCATTTTATTTCTCCATTTTTCCTCTCTATTGCCTGGCAAAACAGGTTGTATATTGATAGCACTATGCGTTTTCTGTTATGCcaacaattatatatattttttttattatcagTTGCTGTTGTAAAGGTTTCACTGTCTATTCAATTAATTTATATCCAAGTTATTTGTCAGAGGGAAGAAATATTAATAAATGAAACATAAGTCTGTCCTAAACCGGTTTAACTTATTGGGATTCTATATTTGCAAGTGTTGAAGCACAAACAAAAGTATACTTCATGTGTACCAATGTACTAAGGCTGTCTAATAAATTGGCTTCCATTACAAGGA
>XM_036977143.1
GCTCTGCAGCGATGTGAGGTGTGCACATTCGGTCGAGCAGAGAAACGAGAGGAATACtgcgagggagaaagagggagtcaAAGGGAGAGATTGAGAATACGGTCAAACACACAAGAGCATCATGGCACCCATAGGACTCAAGGCGGTGGTTGGTGAAAAGATTATGAATGATGTCATCAAGAAGGTGAAGAAGAAGGGGGAATGGAAGGCGCTGATTGTGGACCAGCTGAGCATGAGGATGCTGTCCTCCTGCTGCAAGATGACAGACATCATGTCAGATGGCATCACCAttgtggAGGACATAAACAAACGGCGAGAGCCTCTTCCCACCCTGGAGGCCATTTACCTGATTACCCCCACGGACAAGTCTGTGCAGACCCTGATTGGCGATTTCAAAGACCCCCATTCAGCCAAATACAAAGCAGCCCACGTCTTCTTCACTGACTCCTGCCCCGACCCACTGTTCAACGAGTTAGTAAAGAGCCGTGCTTCCAAATCCATCAAGACCCTGACTGAGATCAACATCGCCTTCCTGCCCTACGAATCACAGgtgtacTCTTTGGACAACCCGGATGCCTTCCAGAGTTTCTACAGCCCCCATAAGACCCAGCTGAAGAACCCAGTGATGGAGAGGCTGGCAGACCAGCTGGCCACCCTGTGTGCCACCCTGAAGGAGTACCCCGCTGTTAGATACCGAGGtgAGTACAAAGACAATGCCACCCTGGCCCAGCTGTTGCAGGACAAACTGGATGCCTACAAGGCTGATGACCCCACCATGGGAGAGGGTCCTGATAAGGCTCGTTCTCAGCTGATCATCCTGGACAGGGCATTTGACCCCGTCTCCCCTGTCCTGCATGAGCTCACCTTCCAGGCCATGGGCTACGACCTGCTGCCCATCGAAAACGACGTCTACAgataTGATTCCCCTGGGATGGGAGACACTTCTCAGAAGGAGGTCCTGCTGCATGAGGATGATGACCTGTGGGTGGGGCTCAGACACAAACATATCGCTGAGGTGTCCACGGAGGTGACACGCCAACTGAAGGACTTTTCTGCTAGCAAGAGGATGAACACTGCTGGAGAGAAGACCACCATGAGGGACCTCTCTCAGATGCTGAAGAAGATGCCTCAGTACCAGAAGGAGCTGAGCAAGTACTCCACTCACCTGCAGCTGGCTGAGGACTGCATGAAGCACTACCAGGGCACAGTGGACAAGTTGTGTCGTGTGGAGCAGGACCTGGCCATGGGTACAGACGCTGAGGGGGAGAAGATCAAGGACCCCATGAGGGCCATCGTGCCCATCCTGCTGGATGCCAATGTCACCACGCACGACAAGATCCGCATCATCCTCCTTTACATCTTCCTCAAGAACGGCATCACGGAGGAGAACCTGAACAAGCTCATCCAGCATGCTCAGATCCCACCTGAGGACAGTGAGATCATCACCAACATGGCCCACCTGGGTGTGCCCATCATCACAGATtcCACCCTTCGCAGAGGAAAGAAGCTGGACAGGAAGGAACGTGTGAGTGCGCAGACCTATCAGCTGTCTCGCTGGACACCACTGGTCAAGGACATCATGGAGGATGTTATTGAAGATAAGCTGGACACCAAGCACTACCCCTACATCTCTACCCGCTCCTCTGCCTCCTTCAGCAGCACTGcagtcagTGCCCGTTATGGCCACTGGCACAAGAATAAGACCCCAGGCGAGTACCGCACCGGGCCGCGCGTCATGGTCTTCATCATCGGAGGCGCGTCCTTCAGCGAGATGCGCTCTGCCTACGAGGTCACGCAGGCCAACGGGAAGTGGGAGGCTATCATTGGATCAACCCACGTCTTCACCCCCACCGCCCTCCTGGAACAGCTCAAGACCATGAACAAACCAGATGAGGAACCAGCAAGCTAAAACCACCCAGCCCCATCTATCTATCTCCTTTCCTCTACCCTACACACCCCCCAGTCATCCTCCCAGTCATCCTTCATGAATTGTGGAAACATCTCATCTTGCACGAGAAGAATAAGAATATAAAACAATGATAGCATTggtgaaaaaaatatatgttgaaACAGAAATAAAATCATGTTGCAAGTATTCTCATGTTTTACAATGGATGCaaataacagaacttatttaaaaaatgtttaaatatcAACTAAGGTAATTTGAAACTGAAAGTACCAAATGTAATATTGTATGCTATGAAACCTGCTAGAATGTGTAAAACGTAGAGGTTCTCTCTGTTTGTTCCCTCAGTTTATCTTATTGGTGTGATTTCTATTGGTAGTGGGTGGAGGAGGGATGCCTTACTTGAGTTGGTTGGCACTAGGAAAGTCAATGCAGTAAGATCATATCACTCAACATGCAATATAACTCATCCCTGTCCTATTAGGGGGAGAATCCTAGCTGGTCAAGACATTTGTATCAGTAGCATACAGGGATGGAACCTAAGGATTTTGGGCACTGACCAGCCAGGCTAGAAGACCGCAATTTTTACTAGTCCAAAATCTGTGCCATGCGATATTTGAAAATACAACATTTCACTAGCCGTTGGACTAGTTGGGCACATTTTCTACTAGCCCGGTCTGAAAAGTACTAGCCATAGGCTAGCAGGCTAGCTTAATTTCCATCCCTGATAGCATGCCTGAACATTGTGTGGACTGTTACTGTATATCCTTTAGTATGGCAATACTGAGAACAAGCCACCCAAGAGATCCTTCAGTGCTCTCTGTGAGTTAGACAGTAACAAACAGCCAAACTGACCCTAGGTCTGAGGATAGAGAAAAACGGGACTCTGTAAATAGCTACAGAATGGTAGAAGCATCCTTCCTCCAGCCATAAGACTGGAACTATTTACTCACCACATCCTTTTCCTTTTCTCTGGAGAGATTTCACGGTTGAGTGTCAAAAGGCCATTGCTTGCAGATGTTTAAAGAATAATCATAAAGGGCCGATTTGTATTTCAGTATTGTATCCTGTCACATTGTAAGTCTTATCATTGGTTAGTATCAAAATGTTTAACCGGGTCATTCACTGAGTAGTGTGTTGTGTATATGCCATATGTTGATGTTTTAGTGTCCCACTGTTGACTGGTGATGTTTCTGACTGTGCAGTAGTAAAAGATTTCCTTTAAAAAATGCCAATGTGAAGTCACGTGTTTGTGATGTTTTAGCTGTAGCTGTAGTGGTCAACAGGGAAAAGAACTAATATCTATATTTTGTTTGTCTGTCCGTTTTATCTTCTGGTGCATTTTAACTCTTCCAATGGTGAATGGCTTTGCAAAAGAAAATGTAACCCCGATATTTCTATCATTTTATTTCTCCATTTTTCCTCTCTATTGCCTGGCAAAACAGGTTGTATATTGATAGCACTATGCGTTTTCTGTTATGCcaacaattatatatattttttttattatcagTTGCTGTTGTAAAGGTTTCACTGTCTATTCAATTAATTTATATCCAAGTTATTTGTCAGAGGGAAGAAATATTAATAAATGAAACATAAGTCTGTCCTAAACCGGTTTAACTTATTGGGATTCTATATTTGCAAGTGTTGAAGCACAAACAAAAGTATACTTCATGTGTACCAATGTACTAAGGCTGTCTAATAAATTGGCTTCCATTACAAGGA

Function

NR:

description
syntaxin-binding protein 1 isoform X2

GO: NA

KEGG:

id description
K15292 STXBP1, MUNC18-1; syntaxin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977142.1 False 3799 mRNA 0.47 20 26191030 26231833
XM_036977143.1 True 3637 mRNA 0.47 19 26191030 26231833
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110523492 LOC106567536 coding downstream 749676 25437411 ~ 25441794 (-)
LOC110522839 LOC106567541 coding downstream 1044196 24776769 ~ 25146834 (-)
LOC110523489 NA coding downstream 1186847 25002552 ~ 25004183 (-)
tnfrsfa LOC106567553 coding downstream 1367125 24781562 ~ 24823905 (-)
LOC110522849 NA coding downstream 1458392 24729725 ~ 24732638 (-)
LOC110523507 LOC106567301 coding upstream 44858 26276691 ~ 26285224 (-)
fut7 LOC106567339 coding upstream 138785 26370618 ~ 26381676 (-)
zgc:113162 LOC106566205 coding upstream 286297 26518130 ~ 26549900 (-)
LOC110523513 camkk2 coding upstream 318573 26550406 ~ 26572788 (-)
snrpd3l smd3 coding upstream 341099 26572932 ~ 26575046 (-)
G383465 NA non-coding downstream 69332 26063638 ~ 26121698 (-)
G383373 NA non-coding downstream 264930 25925870 ~ 25926100 (-)
G383290 NA non-coding downstream 375375 25807503 ~ 25815655 (-)
G383284 NA non-coding downstream 395628 25794445 ~ 25795402 (-)
G383283 cacna1b non-coding downstream 399049 25791764 ~ 25791981 (-)
G383569 NA non-coding upstream 5031 26236864 ~ 26237692 (-)
G383630 NA non-coding upstream 129130 26360963 ~ 26447549 (-)
G383649 NA non-coding upstream 154497 26386330 ~ 26440282 (-)
G383696 NA non-coding upstream 227933 26459766 ~ 26492228 (-)
G383700 NA non-coding upstream 237354 26469187 ~ 26469512 (-)
G383422 NA other downstream 192250 25996806 ~ 25998780 (-)
G380648 NA other downstream 2429223 23759039 ~ 23761807 (-)
G380610 LOC106567829 other downstream 2479139 23709798 ~ 23711891 (-)
LOC110522831 LOC106563032 other downstream 2634487 23488916 ~ 23556681 (-)
G385617 NA other upstream 1777434 28009267 ~ 28010077 (-)
G385769 NA other upstream 1982710 28214543 ~ 28214819 (-)
G386126 NA other upstream 2119942 28351775 ~ 28354745 (-)
G386222 NA other upstream 2259133 28490966 ~ 28491372 (-)
anapc2 LOC106566731 other upstream 2771850 28994099 ~ 29004755 (-)

Expression

LOC110523504(LOC106567272) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
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LOC110523504(LOC106567272) Expression in each Bioproject

Bar chart with 20 bars.
LOC110523504(LOC106567272) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 7500.
End of interactive chart.

Co-expression Network