LOC110522865 (LOC106567246)


Basic Information

Item Value
gene id LOC110522865
gene name LOC106567246
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26437517 ~ 26502284 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977146.1
CCCATCCCATTTTCTCTGttttgagtaatgaagagagagagaaagagggtgagggagaaagagagagagagcactgttGGTGCTTGTCTGTGTATTCTGGGTTACCTCACACATGCACTCTTTAGACACAGTGGGGAGAAGAGGCGCTGAATCTATTGTTTTCTTTCTGAGAGAGCGCTCTGCTGACCCGAAAACACTAAGATTCCTGCCGTAGTGGAATGCCTGTCTTTCCTGGATTTCCTTTAACGTTATAGTGTTTTCTCACCGAATTTCTCCATCCTTGGTTTTTCTGGAATGAGCTGTTTCCTGCCTGCGTCGTTTCCATGCCAGCATGGGAACTGTCGTGTctaaaaggaagaatttaagaAACGATGCGATATCTTCCGTGGCAGCAAAAGTTAGaGCAGCGCGAGCATTTGGAGAGTACCTGTCCCACACACACCCTGAGAACCAAAACGGATCAGCCCATCTCCTGTCTGACACATTTGTGGGCCCAGACTCTGACTCCCCTGGTGGTGTCCgtcaccacaacaacaaccatccATACCCCCACAGGGGTTCTCCAGCCCCCCCTGAGTCCAGCCTGGTGAAATCTCCGCTGGGCCACCTCCAGCCCCCGCccccctccatcaccaccaccaagACCCGCCTGTCTCTGGAGCGCAGCTTCTCAGCCGAAGAGGACCAGCAGAAGTGTGTGGAGTGTGCCCTGCAGCCTGCCCGTGTCTACACCATCACCGGAGAGCACAGTATGCTGGGTAGCAACCGGGGCAGCAAGGAGAGCCTGGAGCTGGAAGTGCTGAAGGGGGCGTCGACCCTGGTCcagccctccacctccccctcctccacctcctcccccacccAGCACCACCTTCGCCATGGACACCGTGGCAACACTCATCGCGACGATGGGAGCCATCGTCACGGCAACCCTGTTGCCGGCGGCAGCAGCAGCAACCACCACACCCTGGCTGTTACCGGCGGGGGTGCTGCCCACCATGGTCACCATGGCAGCCACCACCACCTGTCCCAGCAGCCCCTGTCAAGCTCGGTCAGCGCCCACAACATCCGCAGCTGGGGTGAGGGGGGAAAGGGGGGCTCGCGGGAGGACTGCAGCCTCAACATGGCCTTGGACTCTAGCGGGGCTCCATCCCGTAGCCAGGGCTCCCTGGATCTAGAGAGCTCCCGCGAGGCAGGCAAGCAACACAGACTCCTTGAGAGGATGTGGAGTGTGGACCGGATGACTGGGCTGGAGAGAGAGGACAACAACTGGTACCCAAAAGAAAACATGTTCAGCTTTCAGACTGCTTCTACCACCATGCAGGCGATATCGAACTTCCGGAAGCATCTTAGAATGGTGGGCAGCAGGAGAATGAAGGCACAGACATTTGCCGAGCGTAGAGCGAAGAGTTTCAACCGCTCCTGGAGTGACCCCACCCCTGTCAAGAATGACTCTTCACATGACACCAGAGACAGTGGGGACCTGCCAGCCTCATGTGGGACTCTGGATGAGGGGGAGCGTGAGGACCTagactgggaggaggagagggagatggagagactggCCTGTGAGGGAGATGACTTCATCCCACCTAAAATTATGcTGATCTCCTCCAAAGTCCCCAAGGCAGAGTACGTTCCCACCATCATCCGCAGGGATGACCCCTCAATCATCCCCATCCTCTATGACCATGAACATGCTACGTTTGATGATATCCTCGAGGAGATTGACAAGAAGCTAACAGCCTACAGGAGAGGCAGCAGAATCTGGAGGATGCTCATCTTCTGTCAGGGAGGTCCAGGGCATCTGTACCTGTTGAAGAATAAAGTGGCCACATTCGCCAaggtggagaaagaggaggacatGAGTCAGTTCTGGAGGAGGCTGAGTCGGTTTATGAGCAAAGTGAACCCTGAACCCAACCTCATCCACATTATGGGCTGCTATGTCCTAGGAAACCCCAATGGAGAGAAGCTGTTCCAGAAGCTAAAGAACCTGATGAGGCCTTACTCCATCGAATTTGAGTCACCGCTGGAGCTGTCCGCACAGGGAAAAGAGATTATTGAGATGTACTTTGACTTCCGTCTCTTCCGTCTGTGGAAAACCCGCCAGCACTCCAAACTCCTGGATTATGAAGATCTTTTGTGACGGGGCTCCAAGTCAAGTCAACCCTGTAGCATATATACAGTCTATACTGGGGCAGGAGGACCCACTGAACACCACTGCTCAACACAACTGTAACACCCATCATACCTGCTTTCATCCAGGAGAGGGctgggagaggtggaagaggggaagagggagaggagtgatagagaggatgaagaggaggaggaggatgaagggtGACATAGCAGCTTTCACGGTGCTGTGTGCCTAACCCATTATTTATTTCAACCCTCCTCTTCACCTCCTACGCAACCACAAAGGTCAGGGGTTAAAAAGAGAGAAACCAAGCCATAGGAATGCTAGAAGGACAAGGAGACCTGAAGATTGGAGAGAAAGAGTGATGGAGTATAaacggagagacagagggatgatcttcggtgctctctctttctctgcctcggGGAAGGTGTCTGagatgctctctctttctctccctcgggGAAGGTGTCTGagatgctctctctttctctc
>XM_036977147.1
CATCCCATTTTCTCTGttttgagtaatgaagagagagagaaagagggtgagggagaaagagagagagagcactgttGGTGCTTGTCTGTGTATTCTGGGTTACCTCACACATGCACTCTTTAGACACAGTGGGGAGAAGAGGCGCTGAATCTATTGTTTTCTTTCTGAGAGAGCGCTCTGCTGACCCGAAAACACTAAGATTCCTGCCGTAGTGGAATGCCTGTCTTTCCTGGATTTCCTTTAACGTTATAGTGTTTTCTCACCGAATTTCTCCATCCTTGGTTTTTCTGGAATGAGCTGTTTCCTGCCTGCGTCGTTTCCATGCCAGCATGGGAACTGTCGTGTctaaaaggaagaatttaagaAACGATGCGATATCTTCCGTGGCAGCAAAAGTTAGaGCAGCGCGAGCATTTGGAGAGTACCTGTCCCACACACACCCTGAGAACCAAAACGGATCAGCCCATCTCCTGTCTGACACATTTGTGGGCCCAGACTCTGACTCCCCTGGTGGTGTCCgtcaccacaacaacaaccatccATACCCCCACAGGGGTTCTCCAGCCCCCCCTGAGTCCAGCCTGGTGAAATCTCCGCTGGGCCACCTCCAGCCCCCGCccccctccatcaccaccaccaagACCCGCCTGTCTCTGGAGCGCAGCTTCTCAGCCGAAGAGGACCAGCAGAAGTGTGTGGAGTGTGCCCTGCAGCCTGCCCGTGTCTACACCATCACCGGAGAGCACAGTATGCTGGGTAGCAACCGGGGCAGCAAGGAGAGCCTGGAGCTGGAAGTGCTGAAGGGGGCGTCGACCCTGGTCcagccctccacctccccctcctccacctcctcccccacccAGCACCACCTTCGCCATGGACACCGTGGCAACACTCATCGCGACGATGGGAGCCATCGTCACGGCAACCCTGTTGCCGGCGGCAGCAGCAGCAACCACCACACCCTGGCTGTTACCGGCGGGGGTGCTGCCCACCATGGTCACCATGGCAGCCACCACCACCTGTCCCAGCAGCCCCTGTCAAGCTCGGTCAGCGCCCACAACATCCGCAGCTGGGGTGAGGGGGGAAAGGGGGGCTCGCGGGAGGACTGCAGCCTCAACATGGCCTTGGACTCTAGCGGGGCTCCATCCCGTAGCCAGGGCTCCCTGGATCTAGAGAGCTCCCGCGAGGCAGGCAAGCAACACAGACTCCTTGAGAGGATGTGGAGTGTGGACCGGATGACTGGGCTGGAGAGAGAGGACAACAACTGGTACCCAAAAGAAAACATGTTCAGCTTTCAGACTGCTTCTACCACCATGCAGGCGATATCGAACTTCCGGAAGCATCTTAGAATGGTGGGCAGCAGGAGAATGAAGGCACAGAGTGGGGACCTGCCAGCCTCATGTGGGACTCTGGATGAGGGGGAGCGTGAGGACCTagactgggaggaggagagggagatggagagactggCCTGTGAGGGAGATGACTTCATCCCACCTAAAATTATGcTGATCTCCTCCAAAGTCCCCAAGGCAGAGTACGTTCCCACCATCATCCGCAGGGATGACCCCTCAATCATCCCCATCCTCTATGACCATGAACATGCTACGTTTGATGATATCCTCGAGGAGATTGACAAGAAGCTAACAGCCTACAGGAGAGGCAGCAGAATCTGGAGGATGCTCATCTTCTGTCAGGGAGGTCCAGGGCATCTGTACCTGTTGAAGAATAAAGTGGCCACATTCGCCAaggtggagaaagaggaggacatGAGTCAGTTCTGGAGGAGGCTGAGTCGGTTTATGAGCAAAGTGAACCCTGAACCCAACCTCATCCACATTATGGGCTGCTATGTCCTAGGAAACCCCAATGGAGAGAAGCTGTTCCAGAAGCTAAAGAACCTGATGAGGCCTTACTCCATCGAATTTGAGTCACCGCTGGAGCTGTCCGCACAGGGAAAAGAGATTATTGAGATGTACTTTGACTTCCGTCTCTTCCGTCTGTGGAAAACCCGCCAGCACTCCAAACTCCTGGATTATGAAGATCTTTTGTGACGGGGCTCCAAGTCAAGTCAACCCTGTAGCATATATACAGTCTATACTGGGGCAGGAGGACCCACTGAACACCACTGCTCAACACAACTGTAACACCCATCATACCTGCTTTCATCCAGGAGAGGGctgggagaggtggaagaggggaagagggagaggagtgatagagaggatgaagaggaggaggaggatgaagggtGACATAGCAGCTTTCACGGTGCTGTGTGCCTAACCCATTATTTATTTCAACCCTCCTCTTCACCTCCTACGCAACCACAAAGGTCAGGGGTTAAAAAGAGAGAAACCAAGCCATAGGAATGCTAGAAGGACAAGGAGACCTGAAGATTGGAGAGAAAGAGTGATGGAGTATAaacggagagacagagggatgatcttcggtgctctctctttctctgcctcggGGAAGGTGTCTGagatgctctctctttctctccctcgggGAAGGTGTCTGagatgctctctctttctctc
>TU435241
TACCTCACACATGCACTCTTTAGACACAGTGGGGAGAAGAGGCGCTGAATCTATTGTTTTCTTTCTGAGAGAGCGCTCTGCTGACCCGAAAACACTAAGATTCCTGCCGTAGTGGAATGCCTGTCTTTCCTGGATTTCCTTTAACGTTATAGTGTTTTCTCACCGAATTTCTCCATCCTTGGTTTTTCTGGAATGAGCTGTTTCCTGCCTGCGTCGTTTCCATGCCAGCATGGGAACTGTCGTGTctaaaaggaagaatttaagaAACGATGCGATATCTTCCGTGGCAGCAAAAGTTAGaGCAGCGCGAGCATTTGGAGAGTACCTGTCCCACACACACCCTGAGAACCAAAACGGATCAGCCCATCTCCTGTCTGACACATTTGTGGGCCCAGACTCTGACTCCCCTGGTGGTGTCCgtcaccacaacaacaaccatccATACCCCCACAGGGGTTCTCCAGCCCCCCCTGAGTCCAGCCTGGTGAAATCTCCGCTGGGCCACCTCCAGCCCCCGCccccctccatcaccaccaccaagACCCGCCTGTCTCTGGAGCGCAGCTTCTCAGCCGAAGAGGACCAGCAGAAGTGTGTGGAGTGTGCCCTGCAGCCTGCCCGTGTCTACACCATCACCGGAGAGCACAGTATGCTGGGTAGCAACCGGGGCAGCAAGGAGAGCCTGGAGCTGGAAGTGCTGAAGGGGG
>TU435244
GGCGCTGAATCTATTGTTTTCTTTCTGAGAGAGCGCTCTGCTGACCCGAAAACACTAAGATTCCTGCCGTAGTGGAATGCCTGTCTTTCCTGGATTTCCTTTAACGTTATAGTGTTTTCTCACCGAATTTCTCCATCCTTGGTTTTTCTGGAATGAGCTGTTTCCTGCCTGCGTCGTTTCCATGCCAGCATGGGAACTGTCGTGTctaaaaggaagaatttaagaAACGATGCGATATCTTCCGTGGCAGCAAAAGTTAGaGCAGCGCGAGCATTTGGAGAGTACCTGTCCCACACACACCCTGAGAACCAAAACGGATCAGCCCATCTCCTGTCTGACACATTTGTGGGCCCAGACTCTGACTCCCCTGGTGGTGTCCgtcaccacaacaacaaccatccATACCCCCACAGGGGTTCTCCAGCCCCCCCTGAGTCCAGCCTGGTGAAATCTCCGCTGGGCCACCTCCAGCCCCCGCccccctccatcaccaccaccaagACCCG

Function

NR:

description
NMDA receptor synaptonuclear signaling and neuronal migration factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977146.1 False 2641 mRNA 0.54 15 26437517 26502284
XM_036977147.1 False 2549 mRNA 0.54 14 26437519 26502284
TU435241 False 707 TUCP 0.55 3 26437619 26460696
TU435244 True 506 TUCP 0.53 3 26437659 26460535

Neighbor

gene id symbol gene type direction distance location
pnpla7a NA coding upstream 40064 26393838 ~ 26397453 (+)
LOC110522858 LOC106563124 coding upstream 50847 26385129 ~ 26386670 (+)
LOC110523509 LOC106567323 coding upstream 67716 26365281 ~ 26369801 (+)
LOC110523508 LOC106567317 coding upstream 85569 26313498 ~ 26351948 (+)
LOC110523505 LOC106567281 coding upstream 127846 26285207 ~ 26309671 (+)
pus1 pus1 coding downstream 351787 26854071 ~ 26877217 (+)
noc4l noc4l coding downstream 375232 26877516 ~ 26884592 (+)
LOC110523521 vps29 coding downstream 382603 26884887 ~ 26887645 (+)
atpbb LOC106566318 coding downstream 387690 26889974 ~ 26892420 (+)
LOC110523522 arpc3 coding downstream 390188 26892472 ~ 26895096 (+)
G382925 NA non-coding upstream 237643 26191034 ~ 26199874 (+)
G382815 NA non-coding upstream 269369 26167202 ~ 26168148 (+)
G382811 NA non-coding upstream 284059 26152625 ~ 26153458 (+)
G382795 NA non-coding upstream 456889 25980401 ~ 25980628 (+)
G382689 NA non-coding upstream 621954 25806737 ~ 25815563 (+)
G383723 NA non-coding downstream 15914 26518198 ~ 26520171 (+)
G383750 NA non-coding downstream 48172 26550456 ~ 26579192 (+)
G383755 NA non-coding downstream 77963 26580247 ~ 26580534 (+)
G383758 NA non-coding downstream 82285 26584569 ~ 26584974 (+)
G383752 NA non-coding downstream 91260 26593544 ~ 26630324 (+)
LOC110523503 NA other upstream 250827 26174884 ~ 26186710 (+)
G382186 NA other upstream 1211787 25225442 ~ 25225730 (+)
G381239 NA other upstream 1661088 24687739 ~ 24776429 (+)
LOC110523468 vamp5 other upstream 2593172 23838502 ~ 23844345 (+)
G380340 NA other upstream 2696058 23740434 ~ 23741459 (+)
G383794 LOC106566282 other downstream 159554 26661838 ~ 26663613 (+)
LOC110522888 LOC106566402 other downstream 1173068 27675352 ~ 27719165 (+)
G385053 NA other downstream 1204430 27706714 ~ 27707078 (+)
G385171 LOC106566130 other downstream 1402183 27904467 ~ 27904731 (+)
G385805 NA other downstream 1914321 28416605 ~ 28417555 (+)
G383082 NA non-coding downstream 15420 26476116 ~ 26482496 (+)

Expression


Co-expression Network