noc4l (noc4l)


Basic Information

Item Value
gene id noc4l
gene name noc4l
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26877516 ~ 26884592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602278.2
TAAAGGAAGTCAACACTACCCTCATCTGGGGGAAAAATGGCGGCTTCGAGGAGGTGCAACGTGAGTTCGGAAAACTTAACCGTAAATGATGTGAAAACACCTAAAATAGACATCAACGGTAAAGTAGATCTGATTATTCAGAGCAAGAAACATGCCAACGATGTGTTCGACGTTCTTGAGTATCTTCAGtcagagaaagagaagaacgTTGTTTGTGCGATTGATGGATGTACTAAACTGTTCAGCACGTTGTTGGAGAGGGGAGAGCTGTATGTTGGGCAACTGCCCAAAGAAGAGTTGCTGATTGGTGGTGATCGCAGTGCGGATGAGAAGTACTGCATGTTCATGCGTCACCGATACAACGGTTGTTTGGAGCTGCTGCTGGAGCACATCAGCCATGAATCATACCAGATTAAGGAGAGTGCCCTGTGTGCACTGATGCAGTTTGCCTCCATGGAAGGAAAGTTCCCCCTCCAAGACTTGGACTGGAGTGAACACTACAGCTTCCCAAGAGAACTCATCCAGgcagtggtggaGCGGCTGCTCTCTCAGGAGGAGGATATGGCGCTTCTTATCTCCAGATTTCAGGAGTACCTGGATATGGAGGATGTGCGTTACTACGTCATGAGCTCTGTCCGTGAAAACGTGGGCAGGGTGATGGACAAAACCAAAGGGGCAGTGATGCCCATTTACCAGAACAACGTGTTCACACTGCTGTCCAATATCAACATGCCTAGCCAGGAGTCAGAACTCACCAACTACCTGGTCAAACAGGAAGCTAAACATGAAGACTGGAAAGCAGCCAAACTAAAAGAACACAAGCGTACCTTTGAGCGGTTGTGGCTCGGGTTTCTGAAGTATAAGTTGCCCAGCAGCATGTACAAGAAGGTGCTGGTGATCCTCCATGACTCCATCCTGCCCCACATAAGCAATCCCACAGTGATGATCGACTTCCTGACTGCAGCCTATGATGTTGGAGGGGCAATCAGTCTGCTGGCTCTCAATGGCCTGTTTGTGCTCATCCATCAGCACAACCTAGATTATCCTGATTTCTACAAGAAGTTGTACAGCCTGCTGGAGCCCTCTGTTTTCCATGTGAAGTACAGAGCACGCTTCTTCCACTTAGCtaacctcttcctctcctccactcaCTTGCCAGTCTACTTGGTGGCAGCGTTTGCCAAGCGTCTGTCCCGCCTGGCCCTCACGGCGCCACCTGCTGTTCTGCTCATGGTACTGCCCTTCATCTGCAACCTGATCCGCCGCCACCCTGCCTGCCGAGTCCTCATTCACCGGCCTAGTGGAGCAGACGAAGCCTGTGATGACCCCTacctgatggaggaggaggacccCTCCCAGTGCCACGCCCTGGAGAGCAGCCTGTGGGAGATTCAGACCCTGCAGAAGCATTACCACCCTGATGTGGCCACGGCTGCCATGGCGATCAACAAGCCACTTTCACAACAGGAGGATGCCATCAGTGAGCTGCTGGAGCTATCCACCTATGAGCTGATGGAGCGGGACCTGAAGCATAAGCAGAGCAAGACTGTGCCGCTGGAGTTTGACCCTGCCACCCAGCTGCTGCAGGGctctgggggggtgggggtgctggGCCTGAACTTCTCTCTAGAGTAGAGACAAACAACCCCAGGACACTCGCACACCTAGCTCTCTGGACCTCACTGTCTCCCCCATATCCCCTTTTCATTCCACATCCACGATTACATATTTCTGTTTGGAATTAGTTGTACCCCAATAAACCTTTCTAGAAAACTGTGA

Function

symbol description
noc4l Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nuclear membrane. Predicted to be integral component of membrane. Predicted to be part of Noc4p-Nop14p complex and small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and segmental plate. Orthologous to human NOC4L (nucleolar complex associated 4 homolog).

NR:

description
nucleolar complex protein 4 homolog

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process

KEGG:

id description
K14771 NOC4, UTP19; U3 small nucleolar RNA-associated protein 19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602278.2 True 1779 mRNA 0.52 15 26877516 26884592

Neighbor

gene id symbol gene type direction distance location
pus1 pus1 coding upstream 299 26854071 ~ 26877217 (+)
LOC110522865 LOC106567246 coding upstream 375232 26437517 ~ 26502284 (+)
pnpla7a NA coding upstream 480063 26393838 ~ 26397453 (+)
LOC110522858 LOC106563124 coding upstream 490846 26385129 ~ 26386670 (+)
LOC110523509 LOC106567323 coding upstream 507715 26365281 ~ 26369801 (+)
LOC110523521 vps29 coding downstream 295 26884887 ~ 26887645 (+)
atpbb LOC106566318 coding downstream 5382 26889974 ~ 26892420 (+)
LOC110523522 arpc3 coding downstream 7880 26892472 ~ 26895096 (+)
LOC110523526 LOC106566370 coding downstream 701013 27585605 ~ 27657306 (+)
LOC118964580 LOC108247247 coding downstream 727165 27611757 ~ 27613814 (+)
G383936 NA non-coding upstream 11896 26865340 ~ 26865620 (+)
G383931 NA non-coding upstream 18304 26858845 ~ 26859212 (+)
G383886 LOC105014832 non-coding upstream 61329 26810795 ~ 26816187 (+)
G383792 NA non-coding upstream 216852 26658660 ~ 26660664 (+)
G383791 LOC106566282 non-coding upstream 219366 26657866 ~ 26658150 (+)
G383895 NA non-coding downstream 17196 26901788 ~ 26905762 (+)
G383971 NA non-coding downstream 71996 26956588 ~ 26957041 (+)
G384003 NA non-coding downstream 118982 27003574 ~ 27004136 (+)
G384058 NA non-coding downstream 195870 27080462 ~ 27080702 (+)
G384073 NA non-coding downstream 224208 27108800 ~ 27109029 (+)
G383794 LOC106566282 other upstream 213903 26661838 ~ 26663613 (+)
LOC110523503 NA other upstream 690826 26174884 ~ 26186710 (+)
G382186 NA other upstream 1651786 25225442 ~ 25225730 (+)
G381239 NA other upstream 2101087 24687739 ~ 24776429 (+)
LOC110522888 LOC106566402 other downstream 790760 27675352 ~ 27719165 (+)
G385053 NA other downstream 822122 27706714 ~ 27707078 (+)
G385171 LOC106566130 other downstream 1019875 27904467 ~ 27904731 (+)
G385805 NA other downstream 1532013 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 2041685 28926263 ~ 28931410 (+)

Expression


Co-expression Network