LOC110523521 (vps29)


Basic Information

Item Value
gene id LOC110523521
gene name vps29
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26884887 ~ 26887645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602280.2
ATTGCCCGGCATTCATTGGCTGATTGCATGACTTACTTGTTAACGTCATTACGTTTTCTTGCGTAGCTGCTTCCTGAAGCCCAACACAGCAAAATAGACGATGTTGGTCCTGGTGTTAGGTGACCTGCACATCCCCCACCGATGCAACACCCTACCAGCCAAGTTTAAGAAGCTGTTGGTGCCAGGCAAGATCCAGCACATCCTCTGTACAGGAAACCTCTGCACCAAGGAGAGCTATGACTACCTGAAGACACTGGCTGGGGACGTACACATTGTCAGGGGAGACTTTGATGAGAACCTGAACTACCCGGAGCAGAAGGTGGTGACAGTAGGTCAGTTTAAGATCGGCCTGATCCATGGGCACCAGGTGATCCCCTGGGGGGACATGGCAAGCCTGGCCCTGCTGCAGAGGCAGCTCGACGTCGACATCCTCatctctggacacacacacaagtttgAGGCCTTCGAAAACGAGAACAAGTTCTACATCAACCCTGGCTCAGCAACTGGAGCCTACAATGCACTGGAAAGCAACATCATCCCATCTTTTGTATTGATGGACATCCAAGCATCCACAGTGGTGACGTACGTATACCAGCTCATAGGAGATGACGTCAAAGTGGAGAGGATTGAGTACAAGAAATCCTAAACCCAGGGCTGAAAAGGGAGGGGTGAGGCAAGGGGTGCTGTCGTTCAGTGTATTGTTTCATTCCTTTCTACCTGCAGCTCCAACTACATAACCACAAAAAATGCTCTACCATAACTGTTTGCTAGCTTAACTCTATAAAGAAATGTATAATATTTTATGTCATCCGCATTGGAATGTGTTCCACCCACCATGTGGTGTctgtaaaaatacatttaaaaaatgcaatTGTCACACGCGTTTGCATAATGTCATTCAAATAAATATTTGGTGCCACTTTTTGAATTTTA
>XM_021602279.2
ATTGGCTGATTGCATGACTTACTTGTTAACGTCATTACGTTTTCTTGCGTAGCTGCTTCCTGAAGCCCAACACAGCAAAATAGACGATGGCTGGTCACCGGTTGGTCCTGGTGTTAGGTGACCTGCACATCCCCCACCGATGCAACACCCTACCAGCCAAGTTTAAGAAGCTGTTGGTGCCAGGCAAGATCCAGCACATCCTCTGTACAGGAAACCTCTGCACCAAGGAGAGCTATGACTACCTGAAGACACTGGCTGGGGACGTACACATTGTCAGGGGAGACTTTGATGAGAACCTGAACTACCCGGAGCAGAAGGTGGTGACAGTAGGTCAGTTTAAGATCGGCCTGATCCATGGGCACCAGGTGATCCCCTGGGGGGACATGGCAAGCCTGGCCCTGCTGCAGAGGCAGCTCGACGTCGACATCCTCatctctggacacacacacaagtttgAGGCCTTCGAAAACGAGAACAAGTTCTACATCAACCCTGGCTCAGCAACTGGAGCCTACAATGCACTGGAAAGCAACATCATCCCATCTTTTGTATTGATGGACATCCAAGCATCCACAGTGGTGACGTACGTATACCAGCTCATAGGAGATGACGTCAAAGTGGAGAGGATTGAGTACAAGAAATCCTAAACCCAGGGCTGAAAAGGGAGGGGTGAGGCAAGGGGTGCTGTCGTTCAGTGTATTGTTTCATTCCTTTCTACCTGCAGCTCCAACTACATAACCACAAAAAATGCTCTACCATAACTGTTTGCTAGCTTAACTCTATAAAGAAATGTATAATATTTTATGTCATCCGCATTGGAATGTGTTCCACCCACCATGTGGTGTctgtaaaaatacatttaaaaaatgcaatTGTCACACGCGTTTGCATAATGTCATTCAAATAAATATTTGGTGCCACTTTTTGAATTTTA
>XM_036977159.1
ACAGCAAAATAGACGATGGTAAGTGAAAATAAATTGGTCCTGGTGTTAGGTGACCTGCACATCCCCCACCGATGCAACACCCTACCAGCCAAGTTTAAGAAGCTGTTGGTGCCAGGCAAGATCCAGCACATCCTCTGTACAGGAAACCTCTGCACCAAGGAGAGCTATGACTACCTGAAGACACTGGCTGGGGACGTACACATTGTCAGGGGAGACTTTGATGAGAACCTGAACTACCCGGAGCAGAAGGTGGTGACAGTAGGTCAGTTTAAGATCGGCCTGATCCATGGGCACCAGGTGATCCCCTGGGGGGACATGGCAAGCCTGGCCCTGCTGCAGAGGCAGCTCGACGTCGACATCCTCatctctggacacacacacaagtttgAGGCCTTCGAAAACGAGAACAAGTTCTACATCAACCCTGGCTCAGCAACTGGAGCCTACAATGCACTGGAAAGCAACATCATCCCATCTTTTGTATTGATGGACATCCAAGCATCCACAGTGGTGACGTACGTATACCAGCTCATAGGAGATGACGTCAAAGTGGAGAGGATTGAGTACAAGAAATCCTAAACCCAGGGCTGAAAAGGGAGGGGTGAGGCAAGGGGTGCTGTCGTTCAGTGTATTGTTTCATTCCTTTCTACCTGCAGCTCCAACTACATAACCACAAAAAATGCTCTACCATAACTGTTTGCTAGCTTAACTCTATAAAGAAATGTATAATATTTTATGTCATCCGCATTGGAATGTGTTCCACCCACCATGTGGTGTctgtaaaaatacatttaaaaaatgcaatTGTCACACGCGTTTGCATAATGTCATTCAAATAAATATTTGGTGCCACTTTTTGAATTTTA

Function

symbol description
vps29 Predicted to enable metal ion binding activity. Predicted to be involved in endocytic recycling; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in endosome membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS29 (VPS29 retromer complex component).

NR:

description
vacuolar protein sorting-associated protein 29 isoform X1

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004647 phosphoserine phosphatase activity molecular_function

KEGG:

id description
K18467 VPS29; vacuolar protein sorting-associated protein 29

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602280.2 False 936 mRNA 0.47 4 26884887 26887645
XM_021602279.2 False 934 mRNA 0.47 5 26884901 26887645
XM_036977159.1 True 866 mRNA 0.46 4 26884972 26887645

Neighbor

gene id symbol gene type direction distance location
noc4l noc4l coding upstream 295 26877516 ~ 26884592 (+)
pus1 pus1 coding upstream 7670 26854071 ~ 26877217 (+)
LOC110522865 LOC106567246 coding upstream 382603 26437517 ~ 26502284 (+)
pnpla7a NA coding upstream 487434 26393838 ~ 26397453 (+)
LOC110522858 LOC106563124 coding upstream 498217 26385129 ~ 26386670 (+)
atpbb LOC106566318 coding downstream 2329 26889974 ~ 26892420 (+)
LOC110523522 arpc3 coding downstream 4827 26892472 ~ 26895096 (+)
LOC110523526 LOC106566370 coding downstream 697960 27585605 ~ 27657306 (+)
LOC118964580 LOC108247247 coding downstream 724112 27611757 ~ 27613814 (+)
LOC110523527 LOC106567169 coding downstream 771499 27659144 ~ 27664034 (+)
G383936 NA non-coding upstream 19267 26865340 ~ 26865620 (+)
G383931 NA non-coding upstream 25675 26858845 ~ 26859212 (+)
G383886 LOC105014832 non-coding upstream 68700 26810795 ~ 26816187 (+)
G383792 NA non-coding upstream 224223 26658660 ~ 26660664 (+)
G383791 LOC106566282 non-coding upstream 226737 26657866 ~ 26658150 (+)
G383895 NA non-coding downstream 14143 26901788 ~ 26905762 (+)
G383971 NA non-coding downstream 68943 26956588 ~ 26957041 (+)
G384003 NA non-coding downstream 115929 27003574 ~ 27004136 (+)
G384058 NA non-coding downstream 192817 27080462 ~ 27080702 (+)
G384073 NA non-coding downstream 221155 27108800 ~ 27109029 (+)
G383794 LOC106566282 other upstream 221274 26661838 ~ 26663613 (+)
LOC110523503 NA other upstream 698197 26174884 ~ 26186710 (+)
G382186 NA other upstream 1659157 25225442 ~ 25225730 (+)
G381239 NA other upstream 2108458 24687739 ~ 24776429 (+)
LOC110522888 LOC106566402 other downstream 787707 27675352 ~ 27719165 (+)
G385053 NA other downstream 819069 27706714 ~ 27707078 (+)
G385171 LOC106566130 other downstream 1016822 27904467 ~ 27904731 (+)
G385805 NA other downstream 1528960 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 2038632 28926263 ~ 28931410 (+)

Expression


Co-expression Network