atpbb (LOC106566318)


Basic Information

Item Value
gene id atpbb
gene name LOC106566318
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26889974 ~ 26892420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165158.1
GTAGTTAGCGAATGTCTTCTGCCTGCAAGCATGTTAGCTGTGAATGTAGCCGCCGACATGGTTTAGCAACATTACTCTTTAATAATTAAGCGACTAAAATTGTTTTGTGTAGTTTCAGTCCTTGGGATATTATAGTATAAATGCCTCGTTATGCTCAACTCGTGATGGGCCCCGCGGGAAGTGGAAAGAGTACCTACTGCTCGACACTGATCCAGCATGCAGAAGCCATAAACCGCTCTGTACAGGTGGTCAACCTAGACCCAGCCGCTGAACACTTTGATTACCCGGTCATGGCAGATATCCGGGAGCTGATTATGGTGGATGACGTGATGGAGGATGAGTCACTGAGGTTCGGCCCAAATGGAGGGCTGGTGTTCTGCATGGAGTACTTTGCCAACAACTTTGACTGGCTGGAGGAGAGCCTGGGCCACGTGGAGGATGACTACATACTGTTTGACTGTCCTGGTCAAATAGAGCTCTACACACACCTCCCTGTGATGAGGCAGCTCGTAGAGCAGCTCCAGCAATGGGAATTCCGTGTTTGTGGCGTCTTCCTGGTAGACTCGCAGTTCATGGTGGAGACCTTCAAGTTCATCTCTGGTATCATGGCTGCTTTGAGTGCCATGGTGTCTTTGGAGATTCCAACAGTCAACATAATGACTAAAATGGACCTGCTGAGTCCCAAGGCCAAAAAGGAAATTGAAAAaTACCTGGACCCAGACATGTACTCAATGATGGAGGACAACTCTGTCACCATTAGGAGCAAGAAGTTCAAGAAGCTGACCAAAGCCATCTGTGGCTTGATTGATGACTACAGCATGGTGAGATTCCTGCCATTTGACCGCACAGATGAGGAAGGCATCAACATAGTGCTTCAGCACATTGACTTTTCCATACAATACGGAGAAGACTTGGAGTTCAAGGAGCCAAAGGAGCCTGAGGAGGAGCCTGACAACACAAATTATGATGATTTATTTCAGGACAAAGTAGAGGACTGAGAGGTGACATAAGAGGCCCAGAAAGAAAAGAATAACATTTGATGGTCAGAGGGAAATGTTAATTGCAGTATCATGCcacataattatttatttatagactTATTATGtctgtttaaaaatgttttagtTATCATTTTAAGATTGTGTATAGTGTATTGTGACCCTGATATTGCAACCCCCTCCCCCCCCGTGGAATATTTGGATTATATTTTTTTTGAATAAAAACTATTGTAAAACAGTT

Function

NR:

description
PREDICTED: GPN-loop GTPase 3-like

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K24104 GPN; GPN-loop GTPase

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165158.1 True 1239 mRNA 0.44 8 26889974 26892420

Neighbor

gene id symbol gene type direction distance location
LOC110523521 vps29 coding upstream 2329 26884887 ~ 26887645 (+)
noc4l noc4l coding upstream 5382 26877516 ~ 26884592 (+)
pus1 pus1 coding upstream 12757 26854071 ~ 26877217 (+)
LOC110522865 LOC106567246 coding upstream 387690 26437517 ~ 26502284 (+)
pnpla7a NA coding upstream 492521 26393838 ~ 26397453 (+)
LOC110523522 arpc3 coding downstream 52 26892472 ~ 26895096 (+)
LOC110523526 LOC106566370 coding downstream 693185 27585605 ~ 27657306 (+)
LOC118964580 LOC108247247 coding downstream 719337 27611757 ~ 27613814 (+)
LOC110523527 LOC106567169 coding downstream 766724 27659144 ~ 27664034 (+)
LOC110522888 LOC106566402 coding downstream 782942 27675352 ~ 27719165 (+)
G383936 NA non-coding upstream 24354 26865340 ~ 26865620 (+)
G383931 NA non-coding upstream 30762 26858845 ~ 26859212 (+)
G383886 LOC105014832 non-coding upstream 73787 26810795 ~ 26816187 (+)
G383792 NA non-coding upstream 229310 26658660 ~ 26660664 (+)
G383791 LOC106566282 non-coding upstream 231824 26657866 ~ 26658150 (+)
G383895 NA non-coding downstream 9368 26901788 ~ 26905762 (+)
G383971 NA non-coding downstream 64168 26956588 ~ 26957041 (+)
G384003 NA non-coding downstream 111154 27003574 ~ 27004136 (+)
G384058 NA non-coding downstream 188042 27080462 ~ 27080702 (+)
G384073 NA non-coding downstream 216380 27108800 ~ 27109029 (+)
G383794 LOC106566282 other upstream 226361 26661838 ~ 26663613 (+)
LOC110523503 NA other upstream 703284 26174884 ~ 26186710 (+)
G382186 NA other upstream 1664244 25225442 ~ 25225730 (+)
G381239 NA other upstream 2113545 24687739 ~ 24776429 (+)
G385053 NA other downstream 814294 27706714 ~ 27707078 (+)
G385171 LOC106566130 other downstream 1012047 27904467 ~ 27904731 (+)
G385805 NA other downstream 1524185 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 2033857 28926263 ~ 28931410 (+)

Expression


Co-expression Network