LOC110523523 (ub2g1)


Basic Information

Item Value
gene id LOC110523523
gene name ub2g1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 26895242 ~ 26898873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602282.2
AGTGTAGTCTGCCAATAAACCTCGAAGAAGAATACGAGCAAGGCGCATGCGGTGTTTGTGTGGGGCTTTTGCTAGCTTAGCCGTGTAACAAGCTGTGCATCCCTGCGCGAAACGATCAACCAAATAGGCCTTATTCTAACATCGGAAGCAGGCTACTGTAGTTAGGTATCTCTCTAATTCTTTGTTGTGTTATATTTTATGTTAGAGTTAGGTCAGGTCGTTGTCTATATTAGTTAGCTCAACTAATCCACATAAAATGACTGATCAATCATCACTGCTGCTTCGAAAACAACTGGCAGAACTCAACAAGAACCCCGTGGAGGGATTTTCTGCCGGTCTCATAGACGATGATGACATCCATCAGTGGGAGGTGGTCGTTATTGGCCCTCAAGATACATTATTTGAGGGTGGTTTCTTTAAAGCCTACCTGACCTTTCCCCATGACTACCCTCATAGGCCCCCGAAGATGAAGTTCATCACAGAAATATGGCATCCCAATGtggCAAAGAATGGTGACGTGTGTATCTCCATTCTGCATGAGCCCGGAGAAGACAAgtttggctatgaaaagcctGAGGAGCGCTGGCTGCCCATCCACACTGTAGAGACCATCATGATCAGTGTCATCTCCATGCTGGCCGACCCGAACGGCGACTCACCCGCCAACGTGGACGCAGCCaaggaatggagagaggatcCTTGCGGAGAGTTCAAAAGGAAGGTCGCTCGCTGTGTACGAAAGAGTCAGGAGATGGCGTTTGACTAGGCCCCCTCCTCGACACAAACCCACTGAAATTTTTACCTTGGCGGATACATCATGTcactcttcaataaagacttTTGCACCCGTGTTCTGCTCTTAGGAAGATGTGGAATAAAAAGCCAACCCTTTTCTTTAGTTGTGTAAATAGGGTCAAGTAAATGTGTGTAGATAAACATCCCCCTCATGGTTATTGTCCAGTTCTCACCTTATACTTATTTATTTAGATGATCATGACAATTCAAGATGTATTTGTTTTGATGAGCTTATTCTTTATTTTCAACCTGCCACTGAGCCATCTATTTTAGACTTGTCTCTTATGCAATTTTGGAGTTCAGAGTATTTGAAGAGATTGTTACCAACAAAGGCTTTCGTTGCCCGTTCTATACCCCTGGAAGCCCATCCCCTCAAGTGTTCTGCAAAGTCCTTTCAAAGAGGTCAATACACTCTGCTGCCTTAAGTTGTTTTCCTGTAAGCAAAGGAAACTGTCTCCAGTGATGTCAACATCTGTCTGGATACATTTCTTCTGTGTTTGATCAATATTTTTGGGGATAAACCAAAAACATTAGCATGATGAACAGAGAATATTTTTTGTAATAAAGATCATCTAAAATTTGA

Function

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 G1 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10575 UBE2G1, UBC7; ubiquitin-conjugating enzyme E2 G1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602282.2 True 1378 mRNA 0.43 6 26895242 26898873
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110523517 LOC106566303 coding downstream 40063 26810766 ~ 26855179 (-)
LOC110523515 LOC106566295 coding downstream 91129 26669887 ~ 26804113 (-)
LOC110523516 LOC106563144 coding downstream 225428 26629389 ~ 26669814 (-)
LOC110523514 LOC106566259 coding downstream 271142 26593074 ~ 26624100 (-)
snrpd3l smd3 coding downstream 320196 26572932 ~ 26575046 (-)
ulk1b NA coding upstream 2904 26901777 ~ 26937060 (-)
mmp17a mmp17 coding upstream 64128 26963001 ~ 27064380 (-)
LOC110522882 sfswap coding upstream 241637 27140510 ~ 27281507 (-)
LOC110522892 LOC106563163 coding upstream 865982 27764855 ~ 27944738 (-)
LOC110523530 LOC100195848 coding upstream 1118873 28017746 ~ 28041548 (-)
G384443 vps29 non-coding downstream 8151 26886489 ~ 26887091 (-)
G384441 noc4l non-coding downstream 13930 26880426 ~ 26881312 (-)
G384440 noc4l non-coding downstream 15733 26877493 ~ 26879509 (-)
G384357 NA non-coding downstream 156457 26736798 ~ 26738785 (-)
G384328 NA non-coding downstream 206861 26681696 ~ 26688381 (-)
G384464 NA non-coding upstream 42519 26941392 ~ 26941877 (-)
G384473 NA non-coding upstream 51913 26950786 ~ 26951277 (-)
G384477 NA non-coding upstream 56132 26955005 ~ 26955236 (-)
G384481 NA non-coding upstream 61800 26960673 ~ 27002529 (-)
G384483 NA non-coding upstream 62979 26961852 ~ 27003617 (-)
G383422 NA other downstream 896462 25996806 ~ 25998780 (-)
LOC110523492 LOC106567536 other downstream 1453448 25437411 ~ 25441794 (-)
G380648 NA other downstream 3133435 23759039 ~ 23761807 (-)
G380610 LOC106567829 other downstream 3183351 23709798 ~ 23711891 (-)
LOC110522831 LOC106563032 other downstream 3338699 23488916 ~ 23556681 (-)
G385617 NA other upstream 1110394 28009267 ~ 28010077 (-)
G385769 NA other upstream 1315670 28214543 ~ 28214819 (-)
G386126 NA other upstream 1452902 28351775 ~ 28354745 (-)
G386222 NA other upstream 1592093 28490966 ~ 28491372 (-)
anapc2 LOC106566731 other upstream 2104810 28994099 ~ 29004755 (-)

Expression

LOC110523523(ub2g1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
End of interactive chart.

LOC110523523(ub2g1) Expression in each Bioproject

Bar chart with 21 bars.
LOC110523523(ub2g1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
End of interactive chart.

Co-expression Network