LOC118964580 (LOC108247247)


Basic Information

Item Value
gene id LOC118964580
gene name LOC108247247
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 27611757 ~ 27613814 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977175.1
gaggacattgtttctgatcggggtccccagttcacgtccagggtgtggaaggcgttcatggaacgtttgggggtctcggtcagagtaatgggcaggtggagagagtgaaccaggatgtgggtaagTTTCTGCGGTTGTATTGCGTGGttaaaaaaacgagttttaaaacgtttccaaccttagtgtatgtaaacattcccgacttcaactgtatatacatacatactgcatatatacacatacctacatacatacatacatacatacatacatacatacatacatacatacatacatacataccatatacaGACTCATAaatacagaaaaaaaagaaacagaagtcACTTGAACCCAGTCTGACAAAGGGAAGATTCATATGATAGACAAGCatatacaccatctatatacacacaccattATCCATATAGAAGCTAAATATTTGCCCTTTTTCTTTTATTCCAGGCTTCATGTAAATATTTCTCAAACGGAAATACATAAtggacaaaaaacaaaaaaacagttgTCTCTGGGATGCAGTGTGGAATGGTGATTTTCTGTGCCACGATAGCACTGAAAGTCTTGCACACTTTCTCAAGAATGCTATGGTTTGATAACCGTGAGTGAAGACCTGCAAGATATGTGAGAGACAAACTGGCggccataagagaggtctggggAAATGGGTGGAGCGTCTGCCATACCTCTACAACGCTGGAACTGAAGTAACAGTGGATGAGCAACTGGTTCCATTCagagGTCGCTATCCTTTCCGGCAGTATATGCTCAGCAAGCCAGCAAAGTATGGCATCAAGATATGGGTGGCCTGTGACGCACAATCCAGCTACGCTTAgaagatgcaagtctacacaGGGAAACCGACCAGTGGAGGTCCGGAGAAGAACCAGGGATGCGATTTTTGCTTGATGTGAGAGATAgactgagggggcacaatgtcacatgtgacaatttcttcacctcttatgaactcagccagcagctcctgaagaggaagatcacaatggttggcacagttagaaagaacacgCCTGAGCTCCCCCTGCACTCCTCGCAccaagggggagagaggccttctcatcaaagtttgccttcacccctaccaccactctagtttcttacctcccaaagaggaacaaggatgtggtcctcctgagcacactgcacaaaatggCTGAGACCAGTGATAGTGAGGACAGGAaaccagccatcatcctggactacaaccacaacaaaggaggcatggacaacctggacaaggtgattggaacttacagctacAGGAGGATTAgtgcccgctggcccctggtcatcttccataacatcattgatgtgtcctcatacaatgccttcatgatatggaacaagatcaaccctacctggatgcctgataagcggaacaagaggagggtgttccctgggcagctgggaaaggcacttgtaaccccacacattcaaagaagggagcacCTCCCctgcacagcagcctctgcagcgcttgtgaaagctgtacagggggctgaatcttgtcctgatccacctgaggctgcagctggggcaggcaagaggaggtGATGCCAATTCTGCCCAAATACTATGTGCTTCACATATGAGAAATACATCTTCAaagtcatgcacacacacttgcatattgtcctacatgtgctaattagagttgattgatttatgttcttcacattttttttatatcaGTTATCTTAtgttattcttatttattgttgttgtttatagaCCTTGTGGGTAGgggcaatggttaaaaaaaatgggagaagactagtattttgtagttaaATTCCTCGTTGTACAGTATgtaagaatatatcactatgttgccaaaaatgTTCAAGACTGATAtagtttcccttcaataaaatgcatttaaaacta

Function

NR:

description
piggyBac transposable element-derived protein 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977175.1 True 1926 mRNA 0.44 2 27611757 27613814

Neighbor

gene id symbol gene type direction distance location
LOC110523522 arpc3 coding upstream 716661 26892472 ~ 26895096 (+)
atpbb LOC106566318 coding upstream 719337 26889974 ~ 26892420 (+)
LOC110523521 vps29 coding upstream 724112 26884887 ~ 26887645 (+)
noc4l noc4l coding upstream 727165 26877516 ~ 26884592 (+)
pus1 pus1 coding upstream 734540 26854071 ~ 26877217 (+)
LOC110523527 LOC106567169 coding downstream 45330 27659144 ~ 27664034 (+)
LOC110522888 LOC106566402 coding downstream 61548 27675352 ~ 27719165 (+)
LOC118964522 NA coding downstream 122064 27735878 ~ 27741089 (+)
LOC110523528 nsma3 coding downstream 368831 27982645 ~ 27994423 (+)
si:ch211-222n4.2 LOC106566406 coding downstream 394259 28008073 ~ 28016052 (+)
G384917 NA non-coding upstream 127201 27484354 ~ 27484556 (+)
G384773 NA non-coding upstream 240410 27370929 ~ 27371347 (+)
G384770 NA non-coding upstream 243064 27368457 ~ 27368693 (+)
G384200 sfswap non-coding upstream 345247 27262252 ~ 27266510 (+)
G384092 NA non-coding upstream 474024 27137530 ~ 27137733 (+)
G385044 NA non-coding downstream 74341 27688155 ~ 27688671 (+)
G385139 NA non-coding downstream 242866 27856680 ~ 27856887 (+)
G385144 NA non-coding downstream 249476 27863290 ~ 27891266 (+)
G385172 LOC106566130 non-coding downstream 291231 27905045 ~ 27905332 (+)
G385182 NA non-coding downstream 306240 27920054 ~ 27920350 (+)
G383794 LOC106566282 other upstream 948144 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1151061 26437517 ~ 26502284 (+)
LOC110523503 NA other upstream 1425067 26174884 ~ 26186710 (+)
G382186 NA other upstream 2386027 25225442 ~ 25225730 (+)
G381239 NA other upstream 2835328 24687739 ~ 24776429 (+)
G385053 NA other downstream 92900 27706714 ~ 27707078 (+)
G385171 LOC106566130 other downstream 290653 27904467 ~ 27904731 (+)
G385805 NA other downstream 802791 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 1312463 28926263 ~ 28931410 (+)

Expression


Co-expression Network