LOC110522888 (LOC106566402)


Basic Information

Item Value
gene id LOC110522888
gene name LOC106566402
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 27675352 ~ 27719165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976546.1
ATAACATATCCGCAGTCTACTCAGTGAAGTTTGCTTTTGTTGCGTCCACAATAAACGGTGAATGTAAAAGAATACCACAACTTGGATCTTTGTTCTACAATTTGGCGATCCACAAGCGAAAGTGAATTTTACGCAGAAAAATTAGACGGAGGCAAGGTGCAGAAAGTAGCGTAAAGTGGATACCCAAACTGGTGGACCTAAACAACACTTCAGTTATTACTTGGAACAGGAATTTACCGTTGCATCTGTTATCAACAGagagttaaatatatatattcattacAGCTCTTTACTTTGTTGGGGATTGAAAAAATGTAAATTACCATAGATGTGTGTCAATTGAGAGCAGAAAGTCTGACGCTGTTCTCTTGGTACGTTGTTAGAGCTCTCCTGTAGATAATCAGGACTGTCCAACTTGCCAAGATGCTTTATTTGCCTCTCTTTTGGATATTGCCAATTGTCACAGTATTAATTTTCAAACTTCTGACAGGTGTACACTGCCAGGAGCTGTCCAAGGACACCAAGAACCAAGCTCCCTTCCCTGTCTACCCTTCAGTTGGCTACCAGATCCTCAACGCAGACCACCTGCTGTTGAGGGACTACAGCCAGGAGCTGCTGGGGAACTCCAGCCTGCAAGCCCAGAGGCAGGCCTTCCTCATTACCAACCCCGGGGCGGGCCGCCTGCAGCCGGCCGTCAATGTCACCTTCGGCTCCCTGTCTGTGGAGAGACCCATCGGCCCAGAGCTGCTCCTTGGCAGTCGCAGGATCCTCCCTGTCATCCTGGCACGCCAggtcctctcctctgcccccATTATCAGGATCCTCTTTCACATGCCCAGTATGGCCAATGGAGGTGATGCTGGAGGGGGCAGGGCtggggagggggtggaggtgggTAGTGGTGGGAGGAAGGGAATGGAGGAGGGGGCCCACTGTGTGACGGCGTATGCCTTCTGTGAGACGCAGGAGGTGCGGGGGGCATGCCTGCTGTCCCCAGGGGGTTTCTGTGTTGCCCAGTTGAAGCCCGACCTGGCCTGGTTCAGCCCCACCAGCAGCTCCGACAgcagggatagacagggagaggtgCAGGGTATTCCCGTGGAGATCTACTTCCAGAGCCGACGGGACTGGACAGGCCAGTGTGTTCCCCAGGACAGCCTGCAGCATGTGGGGGTGGGGAGGGGCGGCCCAGTGGGATCTGGTATACCCATGAGGAGGGTAGGGAGTGTCAACATCCTAAAGGCACCACCTGGAAGCCCTACGTTCCTGCGTCTGAGGTTAGGGGGAGCCGTGGTGGTCCAGACCTCATCCAAACCCCTGAGGACCACCGACATGGCCACCTTCTATGTCTTCCTGTCCAGTGTGTCTGCTGTGGAGAGCTTCACTCTTAGAGCCACAGTGAGGAAGGGCATGTCGTTCAGTACAGCGAGGCCCACAGACTCAGCCTTATGGGACATCGCCCTGGAACCTGGCAGAAGGGGCGCAAATACCATCTCTGTcgtgtgtcagaggaagaccaGCAATCCCGGGAAAAGGGGTCTGTTGGAGGTCTTGCAGCTTGACTTTGAGACCAAGGAGTTGACTGAGCAACAATTGGAGAGCCAGATAATCACATGGCATTTGGAAACAGGACACATTAAGGATGTTGGCATCATGAAGATCTATACCACCCAGAGAGACTACGTAGGCCTGACACCACTGGTCATGGACAGTGATGTGATGAACACAGCTGTACTGACTGGTAAGAAAGTGTCTGCCCCAGTCAGGACTCTGGCTGTGGAGGCTGACGGCACTGTCACCGATGtcaccaactataccaactgtAGGTCCACTGACGAGAACGTGCTGAAGAGGATGTGTTATTTAATAGCTCAGCATCCCCCTGTGTCCCCCCAGGTGTCGGATCGTTGTGACTATGTGTTTGTTAATGGGAAGGAGACGAGGGGGAGGATGAGGATGGTGCTCAACTTCACCTACAGCTACCTGAGTGCCCAACTGGAGATGAGTGTGTGGATGCCCCGCCTCCCCCTGCTTATCGACATAGCCAACCCCGAACTCAGCCAGATCAAGGGCTGGAGAGTCCCCGTGGCCGCCGGCACCAAGAGGACCAGCTGGgacagtgaggaagaggaagagataaGGAAGAGCAGAGGCTGCATGCTACAGTACCAACACACCGTGGTCAGGGTGCTCACACCCTTTGTGGCCGAGCCGTCGGACCCATCTCCAGACCCCATGGTAGGGGGATTGAGGGGGTCTCTGGAGACTTTTCTGGGGCCAGACTGGCAGGTGGATGTCACCAGGCTGGTGCGCTACTCTCTCAGGGTGGGAGACCAATCTATAGCCAGACTACATGCTGGGACAGTACTGCAGGGACGCGCTGCAGGGACCACCACTCTACAGGTGATGTCTCCTCTGTCTGACTCGATCCTGgctgagcggatggtcagggttCTGGAAGACAAAGTGAGTGTGACAGAGCTGGGAGTGCAGCTGGTCTCtggcctctctctgtccctccagctCAGCCCAGGGAGAAACATGGCCATCATTGCCACGGCTACAATACAGGAAGtcatgcagagacccaaacagGAGGCAATGGTCAGCTGCTGGATCCAGTTCAGTGACGGCTCAGTGACCCCTCTGGACCTCTTTGACCGCAGCGTCTACTCCCTGACTGTGACCTCTGGGGACAAGAGTGTGGCGACCGTGCGCCGGACCCCCCAGTCAGCATTTGTGGTGGCGGAGGGTGAGGGTCAGGGGGCGCTGGTGAAAGCTGAGCTGAGGATCTGTGAGGAGTGCCAGAAGTCTAAGAGGAAGAGCAAGCTGGTGGTGGGCAATGGGCTTCTTAGGGTCACTTTCCAGAAAGGCAGCAGGATGGACGGAGGGGTCACTGGTGGTGGTGCTACTGGCTATGGCAGTGAAGGTTCAGAGTCAGAGGTAGAGCCTGAGCCAGTCGTGACATCACCACGGGAACTCACGCCAGTTGTGACCTCACCACGGGCTCTGATCGAGGGGGACGGAGACAGACGCTCGTTCAGGAGCACCGTGCCAGACTGCCAGGACAGCACTGTAACTGATGTCACCACGTCAACAGCCAGGGATCAGCAAGCTGCTGGAGGTGGCATTTCTACCATCAGAGAGGGcatcagctgcagcaccaccaacACTGCCAGTAGTACCACCACCAGGGGAAAACCTGGCACGGACAAACCTCAGGTGTCTGGCAGACCTGGCAGGGTCAGAAGCCTGGGCAGAGGACAGGAGCTGAGGAGAGACTGGCGGAACGTGGTGGAAAACCCCAACCAGAAGAAAGAGATGCCCAAAGCAGAGGCACCACCCCAGAAAGAGCAGCCCAAGCCGCCCCAGATGGTGGAGAGTGACCTGGTGAAGACGTTCAAAGCCATGTCAGACCTGGAGATTGGCATCTTCGCGCTGGTGGGAGTCTCTGTCCTTGCTATCCTCGCCTTCCTGCTCAACTGCGCCTCCTATAATCTCTGCTTCCGGGTCAACAAGACCCCCGTCCAGGGCAACCCAGACCCCAACGGCCCCAAGGAGCACAGGCACGACTGGGTGTGGCTGGGGACCAGCACAGGGCCAGCGCCTGACAACCCACCCCAGGTCTCCACCATCAAACGGGAGAACCACGGCTCTATTGAGTCCCACTGCAGCCTGCAGAGACAATGCTCCACAGATAGCCACAGGGCTCTGGAGAGCAGCCTGAGTATGAGTGCTATCCCAGAGAGGACTGCCACCTTGGGTAGGAGGAGCAGCTCCCAGCAGGTTCCCACCCTGGACCCCATGGCTCAGGGTTCAGCCACCCTCCTGGCCAAGCCAACCCGCAGCGATCCACTCCACTCCCCCACCAGCAAGAGGAATCAGGTCCAGTTCACCACCTTCACCACACTGGACGTTAAGCACTTGGCTGCCCTGAAGAGGAACGGAGTGGACTTTAACTGGGCCAGTCAGGCTGGGGGAGCTGGGGAGCCTAAGGGGCCTCTACCTGACATGCTATGGCCTGTAGTCACACCCCTGGGCCAACCACAGTGATACTCCAAatgggttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctgaaccTGTTTAAGTGTTTAAATGTGTACAACTTAGTGAGGATACACTTTCtcgtacacatacacatattaaTAGGTGTAAGGTCTCTTCCTTTCCATTAAGTCACACACATGACCAAATTACCAAATTAATGACCAGACCTCATTAATACGGGATGGTGAAAAGTGTTGTATGCTTATAACTgtaaataatgtactgtatatttctaCAGATAGTTGTTTACACATTTCTAACTGTTTAAATGCATTTAATTACTGTTTCATTTCATGTCACTTTTGAACATTTGTATGAGAAAATGCATCATGATATATTTGTATGTGGTTATACACTTTCCAGGCTTTGTATATGTCCTAAACAGAATAGCTTATAGTTTGTTCAATTTGTCAGAGAAAATGcaatatttataaaatatattgGAGCTCTGACAAATGGTGCTCTGTCTGTGCAATACTATTGCCTTTTTTAAGGCTGAAAAGGGATGTTAAATGTTAAATATAGTGGAACTGAAAGCGTTTTAGAAAAAATCTAATCTTAAAATCTGTTCATAAAAAGGAAcaggccttcctgtgatatcgggtgctgtaggtggcctggagggcgggtagtttgcccccagtaatGGGTTGGTTGCCATACCAGCCCAACAATATGCTtttaattgtgcatctgtaaaaatttgtgagggttttaggtgacaagccaaatttctttagcctcctgaggttgaagaggctctgttgcgccttctccaccacactgtctgtgtgggtggtccatttcagtttgtcagtgatgtgtacgccaagtaacttgaagctttccaccttctccactgcggctcCTTCGATGTAAATGGGGGCTGCACCCTCTGCTTTTCcccgaagtccacaatcatcttctttgtttaGTTGAAATTGAGTgaaaggttgttttcctggcatcaCACTCCCagatccctcacctcctccctgt
>TU437362
AGGACAGGATATAACATATCCGCAGTCTACTCAGTGAAGTTTGCTTTTGTTGCGTCCACAATAAACGGTGAATGTAAAAGAATACCACAACTTGGATCTTTGTTCTACAATTTGGCGATCCACAAGCGAAAGTGAATTTTACGCAGAAAAATTAGACGGAGGCAAGGTGCAGAAAGTAGCGTAAAGTGGATACCCAAACTGGTGGACCTAAACAACACTTCAGTTATTACTTGGAACAGGAATTTACCGTTGCATCTGTTATCAACAGagagttaaatatatatattcattacAGCTCTTTACTTTGTTGGGGATTGAAAAAATGTAAATTACCATAGATGTGTGTCAATTGAGAGCAGAAAGTCTGACGCTGTTCTCTTGGTACGTTGTTAGAGCTCTCCTGTAGATAATCAGGACTGTCCAACTTGCCAAGATGCTTTATTTGCCTCTCTTTTGGATATTGCCAATTGTCACAGTATTAATTTTCAAACTTCTGACAGGTGTACACTGCCAGGAGCTGTCCAAGGACACCAAGAACCAAGCTCCCTTCCCTGTCTACCCTTCAGTTGGCTACCAGATCCTCAACGCAGACCACCTGCTGTTGAGGGACTACAGCCAGGAGCTGCTGGGGAACTCCAGCCTGCAAGCCCAGAGGCAGGCCTTCCTCATTACCAACCCCGGGGCGGGCCGCCTGCAGCCGGCCGTCAATGTCACCTTCGGCTCCCTGTCTGTGGAGAGACCCATCGGCCCAGAGCTGCTCCTTGGCAGTCGCAGGATCCTCCCTGTCATCCTGGCACGCCAggtcctctcctctgcccccATTATCAGGATCCTCTTTCACATGCCCAGTATGGC

Function

NR:

description
transmembrane protein 132C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976546.1 False 5110 mRNA 0.53 9 27675362 27719165
TU437362 True 855 TUCP 0.48 2 27675352 27683393

Neighbor

gene id symbol gene type direction distance location
LOC110523527 LOC106567169 coding upstream 11328 27659144 ~ 27664034 (+)
LOC110523526 LOC106566370 coding upstream 18056 27585605 ~ 27657306 (+)
LOC118964580 LOC108247247 coding upstream 61548 27611757 ~ 27613814 (+)
LOC110523522 arpc3 coding upstream 780266 26892472 ~ 26895096 (+)
atpbb LOC106566318 coding upstream 782942 26889974 ~ 26892420 (+)
LOC118964522 NA coding downstream 16713 27735878 ~ 27741089 (+)
LOC110523528 nsma3 coding downstream 263480 27982645 ~ 27994423 (+)
si:ch211-222n4.2 LOC106566406 coding downstream 288908 28008073 ~ 28016052 (+)
LOC110523531 LOC106566436 coding downstream 333456 28052621 ~ 28067973 (+)
LOC110523534 LOC106566461 coding downstream 390657 28109822 ~ 28112779 (+)
G384917 NA non-coding upstream 190806 27484354 ~ 27484556 (+)
G384773 NA non-coding upstream 304015 27370929 ~ 27371347 (+)
G384770 NA non-coding upstream 306669 27368457 ~ 27368693 (+)
G384200 sfswap non-coding upstream 408852 27262252 ~ 27266510 (+)
G384092 NA non-coding upstream 537629 27137530 ~ 27137733 (+)
G385139 NA non-coding downstream 137515 27856680 ~ 27856887 (+)
G385144 NA non-coding downstream 144125 27863290 ~ 27891266 (+)
G385172 LOC106566130 non-coding downstream 185880 27905045 ~ 27905332 (+)
G385182 NA non-coding downstream 200889 27920054 ~ 27920350 (+)
G385498 NA non-coding downstream 241039 27960204 ~ 27960582 (+)
G383794 LOC106566282 other upstream 1011749 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1214666 26437517 ~ 26502284 (+)
LOC110523503 NA other upstream 1488672 26174884 ~ 26186710 (+)
G382186 NA other upstream 2449632 25225442 ~ 25225730 (+)
G381239 NA other upstream 2898933 24687739 ~ 24776429 (+)
G385171 LOC106566130 other downstream 185302 27904467 ~ 27904731 (+)
G385805 NA other downstream 697440 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 1207112 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 2022635 29741800 ~ 29763439 (+)
G387516 NA other downstream 2177821 29896986 ~ 29898134 (+)
G385044 NA non-coding downstream 4762 27688155 ~ 27688671 (+)
G385053 NA other downstream 23321 27706714 ~ 27707078 (+)

Expression


Co-expression Network