LOC110523528 (nsma3)


Basic Information

Item Value
gene id LOC110523528
gene name nsma3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 27982645 ~ 27994423 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602297.2
TATTGGATTAAAGTCTGGCCATTTTTTGTCGAGGGAGGTGTCAATTGGATTCTGAATCGCGTCTGACCGCGTCTCGTCTAACTAGAATTTTCTATGGCTGCCCCAGCCATGCAACAGCCCAGTTACCTTCTGGCCAACCTGAAAATGGACTCGACCACCAAGCCTTTTCTCCAGTGTTGCCAGGAGCTGGTGAAGGTCATTGATGACTACCCTGCAAAGGAGCTGCACCTGATTTTCCCCTGGCTGGTAGAGAGCGTTTTCGGCAGTCTTGACGGTGTCATCGTGGGCTGGAACTTGGGATTTCTGCAGGCGTGCAGCAATCAGTACAACATCGTTATGGACTTTCTCAATCCTAGTGGTCCAATGATGAAGCTTGTGTACAAGCTTCAAGCAGAGGAGTACAAATATGAAATACCAGTCAGCTTCCTGCCTGGTCCTGTAAAGGTGTCCATACAGGAAGGTGTTCTCCCAGATTGCCCACTTTTAAACAACAAGCTGCATTTTCCTCTGTCTGGTCTGCAGACACTCAGCCTGGCACTCAATCCCTTTGAATATTACATGTTTATGTTTGCCTCCAGTCTCATAACACCAAAGAACTACTCTCTAGGACAGCATGTGAGCAGCCTGGATAGTGCATACTTTGTGCTAGTGGACACCTACCTCAAGTATTTCCTTCCTACAGAGGGCAGTGTTCCCCCTTCTCCATTCATCTATAAAAGAGGCTCTGTGTCTCCACCTGCTCCCAGGGCTCCCAGCGTGCCTTTTGCAGGGTATGGCATCCACAGCGCCAGCCTCCTTAAGCGCCACATATCCCATCAGCCCTCAGTCACTGCTGACCCTGCAGCCCAGGAGATCTGGAGGTCAGAGGCATTACTACAGGTGTTTGTGGAGATGTGGCTGCATCACTACTCCCTGGAGATGTATCAGAAGCTGCAGTCCCCCCAGGTGAAGCTGGCGCTGCTGCAGTATCGCCTCAGTATGTCCAGCATGCTGTGCCAACCCCTGACCCCTCCTGGCTCTGGAACCCTCCACACGTACCAAGAGCCATTCACCCCAACAGAGGAGCACGTTCTGGTGGTTCGTCTCCTAGTGAAGCACCTCCATGCCTTCTCCTGCAGCCTGAAACCTGAGCAGGTCTCCTCCTCGGCTCACTCCCACACCAGCCCCCTGGAGGAGTTGAAGAGGGTGGTGGTACATCGTTTTGTCCAGCAGAAGCTATATGTGTTCCTCCAGCACTGCTTTGGCCACTGGCCTTTAGATGCCTCTTTCAGAGTGGTGTTGGAGACGTGGCTTAGCTACATCCAGCCATGGAGGTACACAGGAGAGAAGACCAATCCTCAGACAGACCAGAACAAAGGTGTACCTGAGAAATGGAGCTTGTTTGTTCAGGAGAACCTGCTCATGTACACCAAGCTCTTTCAGGGCTTCCTTAACAGGGTGGTACGCACAGACCTGGTCAACGTCAAAAATGCACTAATGGTCTTCAGGGTGGCCAAAGTCTTCGCTCAGCCAAATCTATCGGAGATGATTCAGAAAGGAGAGCAGCTGTTTCTGGAGCCGGAGCATGTCCTCCACCACCGGCAGCACCGGTGCTTCCTCTCGCCGGGCCACGGTGGCAGCTTTTTATCGGCCCGGCAGCCTGTGGTGACAGACAGGGTGTTCAGGGTGAAGAGCCACGTGTATGGTCTGGAGGGCCAAGACTGTCAGTATAAACAGATGTTCGGCATGGAGCTGAGGGGCACGGTCTTGAAGCTCATTCAGATCATCGACCAGGCGAGGCAGACCGCCAAGAAGATGTCAGATCAGTCAGCTGAGGTGGCGGCCAACAACTCCTTCATGTCCTGGTTTGGAATGGGCTCCCCTGACCTCAACTACACCTTCAatggaggagaggtggatgacACCGGGGCGTGTGTTAAGACCCATGAGTTTCTGGAGAGGTCACTGGACTACCTCTGTCAGATATTTCGGCTGAATGCAGGACAACTGTCTCAGCTGATGGCTACCCTAGGCTCTGGTCAGGACGATGGGAACTCCAAGCAGCTACCAGACTGTGTTCAAGGGGAGAACGGACTCATCCTCACAGACCTGGGCCGGATGCAGGTCATCAATGGACTGCGTAGATTTGAGATAGAGTACCAAGGGGACCCAGAGCTTCAGCCCATCAGGAGCTATGAGAACGCCATCCTGGTCAGACTGTTCTTCAAGATCTCATCTCTGGTGAATGAGAGGTTCGGAGGTCACATGGATGCTCTGTGCTCCCGGCCGGACTTCCTGGGCCAGTTGGGACGGCACTACCTGGCCAGCCCCGAGGCCGCGGCGGATGGCAGGTGCAGGAGCCCAGAGACACGACTAACAGCAGAGAGGTACCGACGGCCGCGGCTAAGCCTGCGCATGCTGGCGAGCTACAGAACCCTGCTGATGCTTCTACTGCTTTACCTGTTTGGGGCACTGTTCTCACTCGGCCCCATGTCCAGCACACTACTCATCCTTACAGGAGGATTTCTCTACGGACTCTTAAGTTGCCCTGTTTGGAGATAAACTCAAGTTCCAGTAGCAGGAGAATGAAATGGCTTTTTTTTTTGCCACTTGCCTTCATGCTTGGGCCACCTATTGTGATAAATGTTGTTTCTTTTTAATCTTGTAAATAAATTCAAGCACATTGCCGTTTGGA
>XM_021602296.2
aatggcacagatacaaagatgagtcctctatctatctctatggcctAGGTCTACTAAAACTTTTTGGAGGTGGCAACACTGCCATCTACCTACAATATTGTACCTAGCTCTTCCTTCCTTCAGGCACGATTCACACGGGAGCGCGCGTTCGCGTGCCACATCCTTCAGCGAAATGACATAATTTCGCTTCGCTATGCTGTTTCTGATAGAAACGCGGTAGATTGGAACCCATAGATAGGACGAGGATACATATACATAGATAGGACTAAGATACATATATTTGATGAACTGGAAAGTCTGGCCATTTTTTGTCGAGGGAGGTGTCAATTGGATTCTGAATCGCGTCTGACCGCGTCTCGTCTAACTAGAATTTTCTATGGCTGCCCCAGCCATGCAACAGCCCAGTTACCTTCTGGCCAACCTGAAAATGGACTCGACCACCAAGCCTTTTCTCCAGTGTTGCCAGGAGCTGGTGAAGGTCATTGATGACTACCCTGCAAAGGAGCTGCACCTGATTTTCCCCTGGCTGGTAGAGAGCGTTTTCGGCAGTCTTGACGGTGTCATCGTGGGCTGGAACTTGGGATTTCTGCAGGCGTGCAGCAATCAGTACAACATCGTTATGGACTTTCTCAATCCTAGTGGTCCAATGATGAAGCTTGTGTACAAGCTTCAAGCAGAGGAGTACAAATATGAAATACCAGTCAGCTTCCTGCCTGGTCCTGTAAAGGTGTCCATACAGGAAGGTGTTCTCCCAGATTGCCCACTTTTAAACAACAAGCTGCATTTTCCTCTGTCTGGTCTGCAGACACTCAGCCTGGCACTCAATCCCTTTGAATATTACATGTTTATGTTTGCCTCCAGTCTCATAACACCAAAGAACTACTCTCTAGGACAGCATGTGAGCAGCCTGGATAGTGCATACTTTGTGCTAGTGGACACCTACCTCAAGTATTTCCTTCCTACAGAGGGCAGTGTTCCCCCTTCTCCATTCATCTATAAAAGAGGCTCTGTGTCTCCACCTGCTCCCAGGGCTCCCAGCGTGCCTTTTGCAGGGTATGGCATCCACAGCGCCAGCCTCCTTAAGCGCCACATATCCCATCAGCCCTCAGTCACTGCTGACCCTGCAGCCCAGGAGATCTGGAGGTCAGAGGCATTACTACAGGTGTTTGTGGAGATGTGGCTGCATCACTACTCCCTGGAGATGTATCAGAAGCTGCAGTCCCCCCAGGTGAAGCTGGCGCTGCTGCAGTATCGCCTCAGTATGTCCAGCATGCTGTGCCAACCCCTGACCCCTCCTGGCTCTGGAACCCTCCACACGTACCAAGAGCCATTCACCCCAACAGAGGAGCACGTTCTGGTGGTTCGTCTCCTAGTGAAGCACCTCCATGCCTTCTCCTGCAGCCTGAAACCTGAGCAGGTCTCCTCCTCGGCTCACTCCCACACCAGCCCCCTGGAGGAGTTGAAGAGGGTGGTGGTACATCGTTTTGTCCAGCAGAAGCTATATGTGTTCCTCCAGCACTGCTTTGGCCACTGGCCTTTAGATGCCTCTTTCAGAGTGGTGTTGGAGACGTGGCTTAGCTACATCCAGCCATGGAGGTACACAGGAGAGAAGACCAATCCTCAGACAGACCAGAACAAAGGTGTACCTGAGAAATGGAGCTTGTTTGTTCAGGAGAACCTGCTCATGTACACCAAGCTCTTTCAGGGCTTCCTTAACAGGGTGGTACGCACAGACCTGGTCAACGTCAAAAATGCACTAATGGTCTTCAGGGTGGCCAAAGTCTTCGCTCAGCCAAATCTATCGGAGATGATTCAGAAAGGAGAGCAGCTGTTTCTGGAGCCGGAGCATGTCCTCCACCACCGGCAGCACCGGTGCTTCCTCTCGCCGGGCCACGGTGGCAGCTTTTTATCGGCCCGGCAGCCTGTGGTGACAGACAGGGTGTTCAGGGTGAAGAGCCACGTGTATGGTCTGGAGGGCCAAGACTGTCAGTATAAACAGATGTTCGGCATGGAGCTGAGGGGCACGGTCTTGAAGCTCATTCAGATCATCGACCAGGCGAGGCAGACCGCCAAGAAGATGTCAGATCAGTCAGCTGAGGTGGCGGCCAACAACTCCTTCATGTCCTGGTTTGGAATGGGCTCCCCTGACCTCAACTACACCTTCAatggaggagaggtggatgacACCGGGGCGTGTGTTAAGACCCATGAGTTTCTGGAGAGGTCACTGGACTACCTCTGTCAGATATTTCGGCTGAATGCAGGACAACTGTCTCAGCTGATGGCTACCCTAGGCTCTGGTCAGGACGATGGGAACTCCAAGCAGCTACCAGACTGTGTTCAAGGGGAGAACGGACTCATCCTCACAGACCTGGGCCGGATGCAGGTCATCAATGGACTGCGTAGATTTGAGATAGAGTACCAAGGGGACCCAGAGCTTCAGCCCATCAGGAGCTATGAGAACGCCATCCTGGTCAGACTGTTCTTCAAGATCTCATCTCTGGTGAATGAGAGGTTCGGAGGTCACATGGATGCTCTGTGCTCCCGGCCGGACTTCCTGGGCCAGTTGGGACGGCACTACCTGGCCAGCCCCGAGGCCGCGGCGGATGGCAGGTGCAGGAGCCCAGAGACACGACTAACAGCAGAGAGGTACCGACGGCCGCGGCTAAGCCTGCGCATGCTGGCGAGCTACAGAACCCTGCTGATGCTTCTACTGCTTTACCTGTTTGGGGCACTGTTCTCACTCGGCCCCATGTCCAGCACACTACTCATCCTTACAGGAGGATTTCTCTACGGACTCTTAAGTTGCCCTGTTTGGAGATAAACTCAAGTTCCAGTAGCAGGAGAATGAAATGGCTTTTTTTTTTGCCACTTGCCTTCATGCTTGGGCCACCTATTGTGATAAATGTTGTTTCTTTTTAATCTTGTAAATAAATTCAAGCACATTGCCGTTTGGATGACGTTA
>XM_021602299.2
agatacaaagatgagtcctctatctatctctatggcctAGGTCTACTAAAACTTTTTGGAGGTGGCAACACTGCCATCTACCTACAATATTGTACCTAGCTCTTCCTTCCTTCAGGCACGATTCACACGGGAGCGCGCGTTCGCGTGCCACATCCTTCAGCGAAATGACATAATTTCGCTTCGCTATGCTGTTTCTGATAGAAACGCGGTAGATTGGAACCCATAGATAGGACGAGGATACATATACATAGATAGGACTAAGATACATATATTTGATGAACTGGAAAGTCTGGCCATTTTTTGTCGAGGGAGGTGTCAATTGGATTCTGAATCGCGTCTGACCGCGTCTCGTCTAACTAGAATTTTCTATGGCTGCCCCAGCCATGCAACAGCCCAGTTACCTTCTGGCCAACCTGAAAATGGACTCGACCACCAAGCCTTTTCTCCAGTGTTGCCAGGAGCTGGTGAAGGTCATTGATGACTACCCTGCAAAGGAGCTGCACCTGATTTTCCCCTGGCTGGTAGAGAGCGTTTTCGGCAGTCTTGACGGTGTCATCGTGGGCTGGAACTTGGGATTTCTGCAGGCGTGCAGCAATCAGTACAACATCGTTATGGACTTTCTCAATCCTAGTGGTCCAATGATGAAGCTTGTGTACAAGCTTCAAGCAGAGGAGTACAAATATGAAATACCAGTCAGCTTCCTGCCTGGTCCTGTAAAGGTGTCCATACAGGAAGGTGTTCTCCCAGATTGCCCACTTTTAAACAACAAGCTGCATTTTCCTCTGTCTGGTCTGCAGACACTCAGCCTGGCACTCAATCCCTTTGAATATTACATGTTTATGTTTGCCTCCAGTCTCATAACACCAAAGAACTACTCTCTAGGACAGCATGTGAGCAGCCTGGATAGTGCATACTTTGTGCTAGTGGACACCTACCTCAAGTATTTCCTTCCTACAGAGGGCAGTGTTCCCCCTTCTCCATTCATCTATAAAAGAGGCTCTGTGTCTCCACCTGCTCCCAGGGCTCCCAGCGTGCCTTTTGCAGGGTATGGCATCCACAGCGCCAGCCTCCTTAAGCGCCACATATCCCATCAGCCCTCAGTCACTGCTGACCCTGCAGCCCAGGAGATCTGGAGGTCAGAGGCATTACTACAGGTGTTTGTGGAGATGTGGCTGCATCACTACTCCCTGGAGATGTATCAGAAGCTGCAGTCCCCCCAGGTGAAGGAGCCATTCACCCCAACAGAGGAGCACGTTCTGGTGGTTCGTCTCCTAGTGAAGCACCTCCATGCCTTCTCCTGCAGCCTGAAACCTGAGCAGGTCTCCTCCTCGGCTCACTCCCACACCAGCCCCCTGGAGGAGTTGAAGAGGGTGGTGGTACATCGTTTTGTCCAGCAGAAGCTATATGTGTTCCTCCAGCACTGCTTTGGCCACTGGCCTTTAGATGCCTCTTTCAGAGTGGTGTTGGAGACGTGGCTTAGCTACATCCAGCCATGGAGGTACACAGGAGAGAAGACCAATCCTCAGACAGACCAGAACAAAGGTGTACCTGAGAAATGGAGCTTGTTTGTTCAGGAGAACCTGCTCATGTACACCAAGCTCTTTCAGGGCTTCCTTAACAGGGTGGTACGCACAGACCTGGTCAACGTCAAAAATGCACTAATGGTCTTCAGGGTGGCCAAAGTCTTCGCTCAGCCAAATCTATCGGAGATGATTCAGAAAGGAGAGCAGCTGTTTCTGGAGCCGGAGCATGTCCTCCACCACCGGCAGCACCGGTGCTTCCTCTCGCCGGGCCACGGTGGCAGCTTTTTATCGGCCCGGCAGCCTGTGGTGACAGACAGGGTGTTCAGGGTGAAGAGCCACGTGTATGGTCTGGAGGGCCAAGACTGTCAGTATAAACAGATGTTCGGCATGGAGCTGAGGGGCACGGTCTTGAAGCTCATTCAGATCATCGACCAGGCGAGGCAGACCGCCAAGAAGATGTCAGATCAGTCAGCTGAGGTGGCGGCCAACAACTCCTTCATGTCCTGGTTTGGAATGGGCTCCCCTGACCTCAACTACACCTTCAatggaggagaggtggatgacACCGGGGCGTGTGTTAAGACCCATGAGTTTCTGGAGAGGTCACTGGACTACCTCTGTCAGATATTTCGGCTGAATGCAGGACAACTGTCTCAGCTGATGGCTACCCTAGGCTCTGGTCAGGACGATGGGAACTCCAAGCAGCTACCAGACTGTGTTCAAGGGGAGAACGGACTCATCCTCACAGACCTGGGCCGGATGCAGGTCATCAATGGACTGCGTAGATTTGAGATAGAGTACCAAGGGGACCCAGAGCTTCAGCCCATCAGGAGCTATGAGAACGCCATCCTGGTCAGACTGTTCTTCAAGATCTCATCTCTGGTGAATGAGAGGTTCGGAGGTCACATGGATGCTCTGTGCTCCCGGCCGGACTTCCTGGGCCAGTTGGGACGGCACTACCTGGCCAGCCCCGAGGCCGCGGCGGATGGCAGGTGCAGGAGCCCAGAGACACGACTAACAGCAGAGAGGTACCGACGGCCGCGGCTAAGCCTGCGCATGCTGGCGAGCTACAGAACCCTGCTGATGCTTCTACTGCTTTACCTGTTTGGGGCACTGTTCTCACTCGGCCCCATGTCCAGCACACTACTCATCCTTACAGGAGGATTTCTCTACGGACTCTTAAGTTGCCCTGTTTGGAGATAAACTCAAGTTCCAGTAGCAGGAGAATGAAATGGCTTTTTTTTTTGCCACTTGCCTTCATGCTTGGGCCACCTATTGTGATAAATGTTGTTTCTTTTTAATCTTGTAAATAAATTCAAGCACATTGCCGTTTGGA

Function

NR:

description
sphingomyelin phosphodiesterase 4-like isoform X3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0050290 sphingomyelin phosphodiesterase D activity molecular_function

KEGG:

id description
K12353 SMPD4; sphingomyelin phosphodiesterase 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602297.2 False 2674 mRNA 0.53 20 27982645 27994415
XM_021602296.2 False 2965 mRNA 0.52 20 27986383 27994423
XM_021602299.2 True 2859 mRNA 0.52 19 27986391 27994415

Neighbor

gene id symbol gene type direction distance location
LOC118964522 NA coding upstream 241556 27735878 ~ 27741089 (+)
LOC110522888 LOC106566402 coding upstream 263480 27675352 ~ 27719165 (+)
LOC110523527 LOC106567169 coding upstream 318611 27659144 ~ 27664034 (+)
LOC110523526 LOC106566370 coding upstream 325339 27585605 ~ 27657306 (+)
LOC118964580 LOC108247247 coding upstream 368831 27611757 ~ 27613814 (+)
si:ch211-222n4.2 LOC106566406 coding downstream 13650 28008073 ~ 28016052 (+)
LOC110523531 LOC106566436 coding downstream 58198 28052621 ~ 28067973 (+)
LOC110523534 LOC106566461 coding downstream 115399 28109822 ~ 28112779 (+)
ftsj1 LOC106566467 coding downstream 233590 28228013 ~ 28235500 (+)
LOC110523538 NA coding downstream 244692 28239115 ~ 28241670 (+)
G385512 NA non-coding upstream 8862 27973567 ~ 27973783 (+)
G385510 NA non-coding upstream 9342 27972989 ~ 27973303 (+)
G385499 NA non-coding upstream 21430 27961016 ~ 27961215 (+)
G385498 NA non-coding upstream 22063 27960204 ~ 27960582 (+)
G385182 NA non-coding upstream 62295 27920054 ~ 27920350 (+)
G385543 NA non-coding downstream 95248 28089671 ~ 28093373 (+)
G385590 NA non-coding downstream 108805 28103228 ~ 28103605 (+)
G385592 NA non-coding downstream 114742 28109165 ~ 28109383 (+)
G385555 NA non-coding downstream 118411 28112834 ~ 28113437 (+)
G385665 NA non-coding downstream 131371 28125794 ~ 28126313 (+)
G385171 LOC106566130 other upstream 77914 27904467 ~ 27904731 (+)
G385053 NA other upstream 275567 27706714 ~ 27707078 (+)
G383794 LOC106566282 other upstream 1319032 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1521949 26437517 ~ 26502284 (+)
G385805 NA other downstream 422182 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 931854 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1747377 29741800 ~ 29763439 (+)
G387516 NA other downstream 1902563 29896986 ~ 29898134 (+)
G388019 NA other downstream 2292528 30286951 ~ 30287824 (+)

Expression


Co-expression Network