LOC110523534 (LOC106566461)


Basic Information

Item Value
gene id LOC110523534
gene name LOC106566461
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28109822 ~ 28112779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602316.2
GCAGCAGCATCAGTCTGGGTTCTTCACCGGAGCCCTACAGACATATTCACTCAGAGCCCGACAAAGCAGCCTGTCCTCCCAGCACAGCCATGAGTACCCTCGGCTTTGACCcttactactcctcctcctcctaccgcCGCTGGTATGTGGAGGGAGCCCCCCGAGGGGTGGTAACCAGGGGGAGGTCACGCTCGGCCTACTCAATCCacacctctcccctgtcctctgtgAGCTCCCGTTTGCAGTACTCCTCTCCTGGACGGGCTCTGCATTCATCCCCGGCTTCCTCCTCCTCCGTGGAACTGGAGCTGAGCCAGGCGGCCCAGGTGAGCTCTGAGTTCCGCACGGTGAGGACCCAGGAGAGGGCTCAGATGCAGGAGCTCAATGACCGCTTCGCCGGCTTCATCGACCGTGTGCGGGAGCTAGAGCAGCAGAACCGTGCTCTGGAGGCTGAGCTGATGCTGCTGAGGCAGAGGCATGGGGAGCCTTCCCGTCTGAGGACCCTGTATGAGCAGGAGGCTCGGGCTCTGAGGGCTGCCGTGGAGGAGGCGCGTGGGGAGCAGCAGGCCGCCCTGGGGCAGAGGGAACGTCTGGGGCAAGCCCTGAGCGCCCTACAGGCCCGCTacgaggaggaggtggtggcccGCGAGGACGCGGAGGGAAGGCTGTTGGATGCGCGGCGTGGTGCCGACCAGGCCACCCTGGCCCGGACCGAGCTGGAGAAGAGGGTGGAGACCCTGCTGGACGAGCTGGCCTTCCTCAAGAGGCTCCACGAGGGGGAGGTGGTAGAGCTCCAGGCCCAGGCCCAGCTGGGGGCCCAGGTGGCTGTGGAGATGGAGGCAACCACGCCGGATCTGTCCGGGGCTCTGAGGGACATCCGAGCCCAGTACGAGAGGCTGGCGGCCAAGAACATGCAGTCTGCTGAGGAGTGGTTCCGTGGGAAGGTGGGCTCCCTGACGGAGAGTGTGGCCCAGCACAGCGATGCAGTGAGGAGCTCCAGGGACGAGGCTGGGGAGTACCGCCGGCAGCTCCAGGCCCGCCTGCTGGAGATCGATGCCTGCAGGGGTCTCAATGAGTCTCTGGAGAAACAGTTGCATGACATGGAGGACAAGCAGAGTGCTGAGATCAATGGCATGCAGGATACTATTGGCCAGCTGGAGAATGAGCTGGGAGCCACAAAGCAGGAGATGGCTCGCTACCTGAAGGATTACCAGGACCTGCTGAATGTTAAGATGGCCCTTGACATCGAGATCGCTGCCTACAGGAAGCTGCTGGAGGGGGAGGAGTCTCGTTTCAGTGTGGGCGTGTCCGGGGGTATGTCCAGTGTCTACGGCCACACCCTGTCGGCCACACCCTCCTTTGGCCGCTCTATGTTCTCCATGCAGTCCAGCCTAAGCTCTGGCGCCCCCTACCTGATGACTTCACGCTTCTTCAGCTCCTCATTTGCCTCTGGAGATGATGTCATCTCTGCCAGCCTAGCCCAGCAGGACTCTGCCAGCCTaccacaggaggaggaggaggagaaggaggaagaggatgagaaggaggaagagaaggaagaggagggagaggataaggaggaagagggtggagaggagaaggaggaagagggtggagaggagaaggaggaaaagggagaggagaaggaggaagatggAGATGAGGGAGGCGAGGTGGAGAAAGAAGATGGGGAGGATGCTAAGGACGGCGAAGAAGCTGGGGATGAGATGGAAGAGAAGGAAGAAACTGcaaaggaggatggagagaaaaagGAAGATAAGGACAAGGGTGGGGAGCAGGAGGGAAAGGAAGGCGAGGAAGATAAAGAAGCGGGTGATAAAGAGGAAGAGGATCAAGCTGAAGCTAAAAGTGAGGAGAAAAAAGATGACAAAGCAGACACCAAAGAAGAGAAAGGTGAACCAGAGATATCCAAGACCGTTGGAAAGAGTGAAAAACCTGCCGAAGAGAAGAAAGACCAATCTGAAAAACCAATGGCTAAAAAGTAAGTTTGTGGCCCAAGACTCCACAAGCCAAAAGACAGTCTAATAAAAACCTCAGCTTGAAAAAACAGCAGAAATACCCAATATTTATGACTTCAGTGTGCTTGTTAACAAGGTGCTCAATACAATACATATTTTAGTGCACTACTGCATAAAATCACTGCTTGCAAAGATCATAAAAAGTCAATTAAAGTCTGGTCACACaattccttgtgtgtgtgtgtgtacgaatgTGTGTGCTGTGCCTGTGTGCAAGTCTGCGAGAGTGTGGTTTCGGATGACTGAATAAATACTATTCAAATGCA

Function

NR:

description
PREDICTED: neurofilament light polypeptide-like

GO:

id name namespace
GO:0005883 neurofilament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K04572 NEFL, NF-L; neurofilament light polypeptide

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602316.2 True 2305 mRNA 0.57 4 28109822 28112779

Neighbor

gene id symbol gene type direction distance location
LOC110523531 LOC106566436 coding upstream 41849 28052621 ~ 28067973 (+)
si:ch211-222n4.2 LOC106566406 coding upstream 93770 28008073 ~ 28016052 (+)
LOC110523528 nsma3 coding upstream 115399 27982645 ~ 27994423 (+)
LOC118964522 NA coding upstream 368733 27735878 ~ 27741089 (+)
LOC110522888 LOC106566402 coding upstream 390657 27675352 ~ 27719165 (+)
ftsj1 LOC106566467 coding downstream 115234 28228013 ~ 28235500 (+)
LOC110523538 NA coding downstream 126336 28239115 ~ 28241670 (+)
LOC110518653 LOC106566474 coding downstream 145188 28257967 ~ 28261576 (+)
LOC118964581 NA coding downstream 148998 28261777 ~ 28264335 (+)
ank1b LOC106566514 coding downstream 157058 28269837 ~ 28346918 (+)
G385592 NA non-coding upstream 439 28109165 ~ 28109383 (+)
G385590 NA non-coding upstream 6217 28103228 ~ 28103605 (+)
G385543 NA non-coding upstream 16449 28089671 ~ 28093373 (+)
G385531 NA non-coding upstream 123666 27985456 ~ 27986156 (+)
G385512 NA non-coding upstream 136039 27973567 ~ 27973783 (+)
G385555 NA non-coding downstream 55 28112834 ~ 28113437 (+)
G385665 NA non-coding downstream 13015 28125794 ~ 28126313 (+)
G385685 NA non-coding downstream 26659 28139438 ~ 28139920 (+)
G385686 NA non-coding downstream 27647 28140426 ~ 28140916 (+)
G385679 LOC106566140 non-coding downstream 33038 28145817 ~ 28161980 (+)
G385171 LOC106566130 other upstream 205091 27904467 ~ 27904731 (+)
G385053 NA other upstream 402744 27706714 ~ 27707078 (+)
G383794 LOC106566282 other upstream 1446209 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1649126 26437517 ~ 26502284 (+)
G385805 NA other downstream 303826 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 813498 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1629021 29741800 ~ 29763439 (+)
G387516 NA other downstream 1784207 29896986 ~ 29898134 (+)
G388019 NA other downstream 2174172 30286951 ~ 30287824 (+)

Expression


Co-expression Network