ftsj1 (LOC106566467)


Basic Information

Item Value
gene id ftsj1
gene name LOC106566467
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28228013 ~ 28235500 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602325.2
TGGTGGCAGTAAGTTAGCACACATAGCAAGTTACAGTATACATGGGAAATATCACTTTATAGTCCATTTTTACGTGCTCTATAACTTAATCTTCGACGGTGTACAGTAATTAGAAAAAAAAGTAGCTAATTTGACCATCGATTGAAGATTAACGCTTAGAATTTTGTACAGGCGTTAACGAGGCAACTATGTTGGGTCCTCACAACGTCAACGTTTACGTGAGTAAAGCACAGCGAGGAAGTGAAAGTGTGAAGATGGGCCGCTCCTCCAAAGACAAACGGGATATCTACTACCGTCTTGCCAAGGAGGAGGGCTGGAGGGCCAGGAGCGCCTTCAAACTACTGCAACTGGATGAGGAGTTTGGCCTGTTCAAAGGTGTAAAAAGGGCAGTCGACCTCTGTGCTGCCCCAGGCAGCTGGAGCCAGGTCCTGAGCCGTAAACTCAGaggaaaggaggagaagagtgaGGAGGTAAAGATAGTGGCGGTGGACCTACAGGCCATGGCTCCTCTCCCTGGGGTGACACAGATCCAGGGGGACATCACCAAGATCTCCACTGCCCTGGAGATAATCAGGCATTTTGAAGGACAGCCTGCAGACCTGGTAGTGTGTGATGGAGCCCCAGACGTGACAGGACTCCATGATGTGGATGAGTACATCCAAGCTCAGCTCCTATTGGCTGCCCTAAACATTACAACACACGTCCTGAAACCTGGAGGAACGTTTGTTGCAAAGATATTCCGGGGGAAGGACGtgaccctcctgtactcccagcTTAAGATATTCTTCAGTAGTGTGACCTGTGCTAAGCCCCGGAGCAGCAGGAACTCCAGCATAGAGGCATTTGTGATGTGTCAGAATTACTCTCCTCCAGTAGGATATGTGCCCAACATGTCCAATCCTCTACTGGATCACTCATATGATGTAGATTTTAACCAGCTGGAGGGACCAAATAGAATCATAGTTCCTTTCTTGGCCTGTGGAGACCTGAGTGCCTTTGACTCGGACCGGACCTACCCTCTCCAGTTGGATGCCAGTAAGGAATACAAGTACACGCCCCCCACCCAGCCCCCCATTCGCCCACCCTACCAGCAGGCCTGTCAACTACGCAAGAACAACCTATTGGCCAAAGAGgactccccctctcttccattGGATGAAGCCCTTTCAAATATGGACATTTCAACCAGTCAGGAAGAGTCATAgtgtgttcagtttattaaacgTTTTGCTGCGTTGTGTGGCGGTTTGTACTGAATGACACATTTACCCACAACGGAGCACACAGTGCTTCAACGGTCTTTGTGTTATGTTTGCTCCCATTTGGTGGGAGGGTTGTGGCCTGATTTAATATGGTTATGACCATTTGTAATCTCAACTTGTGTAGCACACCATACACAATCACCCTCTGGGCCACCATATTCACAACATTCTACATCTGGACGTTCAGAACAGCACCATGTCCATGGAACACTGAGTCCTGCTGAATGTGGCAATAGTTGTCTTCCATAACAGAGAGAACTGGCATTTCATAgagcagaaacagagaaagaaacagaggatATTTGGTTCAGAAAAGCCTTGAATGCGTAAAGACTGTGTATAGATAATTTTTGCCACGTTTTACCAATCAATTTCAATTGTCATGTTGTACCTTTATcgtgtttttattttgtattttctgtttttacttctaaaataaataacatttgcTCCAGCAC
>XM_036977196.1
TATTTCCCTTCCACATTAGTCCTGAATTTCTATATTTGTTTGTCTGAAAGTGAATGCGAACACATTTAGCACGTTTTCAGTTTGCTAGCTTGTCAGGAAGCTAAGCAAACGGTTCCATAAATAGACTTAGCTTGGGATTGCTAGACTTTTAGCTAACGGCTAATTTAGCCAAGTCAACTTCACCTGAAAGGAATAGGACTTATCATGTTGCAATAAAGGGTGAAGATGGGCCGCTCCTCCAAAGACAAACGGGATATCTACTACCGTCTTGCCAAGGAGGAGGGCTGGAGGGCCAGGAGCGCCTTCAAACTACTGCAACTGGATGAGGAGTTTGGCCTGTTCAAAGGTGTAAAAAGGGCAGTCGACCTCTGTGCTGCCCCAGGCAGCTGGAGCCAGGTCCTGAGCCGTAAACTCAGaggaaaggaggagaagagtgaGGAGGTAAAGATAGTGGCGGTGGACCTACAGGCCATGGCTCCTCTCCCTGGGGTGACACAGATCCAGGGGGACATCACCAAGATCTCCACTGCCCTGGAGATAATCAGGCATTTTGAAGGACAGCCTGCAGACCTGGTAGTGTGTGATGGAGCCCCAGACGTGACAGGACTCCATGATGTGGATGAGTACATCCAAGCTCAGCTCCTATTGGCTGCCCTAAACATTACAACACACGTCCTGAAACCTGGAGGAACGTTTGTTGCAAAGATATTCCGGGGGAAGGACGtgaccctcctgtactcccagcTTAAGATATTCTTCAGTAGTGTGACCTGTGCTAAGCCCCGGAGCAGCAGGAACTCCAGCATAGAGGCATTTGTGATGTGTCAGAATTACTCTCCTCCAGTAGGATATGTGCCCAACATGTCCAATCCTCTACTGGATCACTCATATGATGTAGATTTTAACCAGCTGGAGGGACCAAATAGAATCATAGTTCCTTTCTTGGCCTGTGGAGACCTGAGTGCCTTTGACTCGGACCGGACCTACCCTCTCCAGTTGGATGCCAGTAAGGAATACAAGTACACGCCCCCCACCCAGCCCCCCATTCGCCCACCCTACCAGCAGGCCTGTCAACTACGCAAGAACAACCTATTGGCCAAAGAGgactccccctctcttccattGGATGAAGCCCTTTCAAATATGGACATTTCAACCAGTCAGGAAGAGTCATAgtgtgttcagtttattaaacgTTTTGCTGCGTTGTGTGGCGGTTTGTACTGAATGACACATTTACCCACAACGGAGCACACAGTGCTTCAACGGTCTTTGTGTTATGTTTGCTCCCATTTGGTGGGAGGGTTGTGGCCTGATTTAATATGGTTATGACCATTTGTAATCTCAACTTGTGTAGCACACCATACACAATCACCCTCTGGGCCACCATATTCACAACATTCTACATCTGGACGTTCAGAACAGCACCATGTCCATGGAACACTGAGTCCTGCTGAATGTGGCAATAGTTGTCTTCCATAACAGAGAGAACTGGCATTTCATAgagcagaaacagagaaagaaacagaggatATTTGGTTCAGAAAAGCCTTGAATGCGTAAAGACTGTGTATAGATAATTTTTGCCACGTTTTACCAATCAATTTCAATTGTCATGTTGTACCTTTATcgtgtttttattttgtattttctgtttttacttctaaaataaataacatttgcTCCAGC

Function

NR:

description
putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase isoform X1

GO:

id name namespace
GO:0001510 RNA methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K14864 FTSJ1, TRM7; tRNA (cytidine32/guanosine34-2'-O)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602325.2 False 1720 mRNA 0.47 11 28228013 28235500
XM_036977196.1 True 1689 mRNA 0.47 11 28228283 28235498

Neighbor

gene id symbol gene type direction distance location
LOC110523534 LOC106566461 coding upstream 115234 28109822 ~ 28112779 (+)
LOC110523531 LOC106566436 coding upstream 160040 28052621 ~ 28067973 (+)
si:ch211-222n4.2 LOC106566406 coding upstream 211961 28008073 ~ 28016052 (+)
LOC110523528 nsma3 coding upstream 233590 27982645 ~ 27994423 (+)
LOC118964522 NA coding upstream 486924 27735878 ~ 27741089 (+)
LOC110523538 NA coding downstream 3615 28239115 ~ 28241670 (+)
LOC110518653 LOC106566474 coding downstream 22467 28257967 ~ 28261576 (+)
LOC118964581 NA coding downstream 26277 28261777 ~ 28264335 (+)
ank1b LOC106566514 coding downstream 34337 28269837 ~ 28346918 (+)
LOC118964582 NA coding downstream 62223 28297723 ~ 28303108 (+)
G385715 NA non-coding upstream 9785 28217811 ~ 28218228 (+)
G385714 NA non-coding upstream 12276 28215480 ~ 28215737 (+)
G385693 NA non-coding upstream 49199 28163534 ~ 28178814 (+)
G385675 LOC106566140 non-coding upstream 51052 28160844 ~ 28176961 (+)
G385679 LOC106566140 non-coding upstream 66033 28145817 ~ 28161980 (+)
G385726 NA non-coding downstream 9738 28245238 ~ 28245543 (+)
G385730 NA non-coding downstream 15523 28251023 ~ 28251335 (+)
G385733 NA non-coding downstream 18364 28253864 ~ 28256824 (+)
G385809 NA non-coding downstream 39457 28274957 ~ 28275246 (+)
G385812 NA non-coding downstream 41721 28277221 ~ 28277456 (+)
G385171 LOC106566130 other upstream 323282 27904467 ~ 27904731 (+)
G385053 NA other upstream 520935 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 544620 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 1564400 26661838 ~ 26663613 (+)
LOC110522865 LOC106567246 other upstream 1767317 26437517 ~ 26502284 (+)
G385805 NA other downstream 181105 28416605 ~ 28417555 (+)
spag8 LOC106566715 other downstream 690777 28926263 ~ 28931410 (+)
tbx5a LOC106566939 other downstream 1506300 29741800 ~ 29763439 (+)
G387516 NA other downstream 1661486 29896986 ~ 29898134 (+)
G388019 NA other downstream 2051451 30286951 ~ 30287824 (+)

Expression


Co-expression Network