smc5 (smc5)


Basic Information

Item Value
gene id smc5
gene name smc5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28805226 ~ 28829428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602355.2
CCCACTTTCTCCAATCATCAATCGACAACCGTCCATACTGGGCGCGCGAATTCCACTGAAAGACTGCTAGCACATCTTCGAAGTTTTAAGTCAGCATCATGGCTTCTGCGGGCAAGAAAAAACGAATAAGTAACGTAACGAACACACAACCTTCAAATAATGGAGCAGGTTCGTCCTCTGGTACCGTTGGAGATGGCCAGGTGTCTGGATTTGTCGAAGGATCCATAATTCGCATCACAATGCAAAACTTCCTGACCTATGACCACTCCATAGTTCACCCTGGACCAAACCTAAACATGATTGTGGGGGCCAATGGAACTGGCAAGTCCAGTATTGTCTGTGCCATATGTCTGGGTCTGGCAGGAAAGACTGCCATCCTGGGCAGAGGGGACAAGGTTGGGCTGTATGTGAAGCGTGGGTGCAACAAAGGATCGGTTGAGATTGTACTGCACAAGGCCAAGGGGAACCTGGTGATCAATAGAGAGATCCATGTGGAGAATAACCAGTCGACGTGGTTGCTTAATGGGAAACATTCCAGCCAGAAgactgtggaggaggaggtgaaggctcTACAGATCCAAGTGAGCAACCTCTGCCAGTTTCTGCCACAGGAGAAGGTGGGTGAGTTTGCCAAGATGACCAAGATTGAGCTGCTAGAGGCCACAGAGAAGTCAGTGGGACCTCCAGAGATGTATGAGTTCCACTGCGAGCTCAAAACCTTCCGCACCAAAGAGAGGGAACTGGAGAATGTGTGCAAGGAGAAGGCCAGCGCCCTGGAGAAGTTCAAGCAGAGGAACGAACGGAACAAGCACGATGTGGAGCGCTACTACGAGAAGAAGAGACACCTGGACAACATAAAGATGCTGGAGAAGAAGAAACCCTGGGTGGAGTATGAGACTGCCCGTAAGGAGCTGGAGGGGGTGAAGAAATCAAGGGAGGACGCCAAGAAGCAGCTGAAAACCGTGAGGGAGTCCCAGGCCCCCATGCTGAAGAAAATCCAGCACATCGACAGTCAGCTGAGGCCCATCGAGAACCAGATGAAGGACAAGACGGTCAGCATCAGGGAGGCCTCTCAGAAGTGTAAACAGAAACAGGACCAGCTGGACCGGAAGCACAGAGAGATTGAGGACATCAAGCAGGCCTTCAGCCTGAAGCAGACCGAGGCAGCGGACCGGCAGAAGCGAATCAGCAACACCCGGCGCATGATTGATGACTTGAGGGCGGAGCTGGCCAACGTAGGCGACCAATCAGACGTGACGCCGCGGATCAATGCAGTGAATGCAGAGCTGAGGCGCATCCAGGAAGAGAAAgcaaagatggagggagaaaagGCTGACATGCGTAGGGAGAAGGACAACTTGAACGGAGAGTGTAGACTGTTGAAGAACAGGCTGAGGAGTCTGGATGACATGATGAAAATCAAGGAGGAGAAGCTGAGAGGGCGCTCCAAGGATACCTACGCTGCCGTCCAGTGGCTGAGGCAGAACAAACACATCTTCAGTGGCAATGTCTATGAACCTATGATGCTAGTGATTAGTGTCCGCAACCCTAACCATGCTAAGTACGTGGAGAACCACATTCCATTCAATGACCTGCGAGCCTTTGTCTTCCAGAAGAGGGAAGACATGGAAAAGTTTATGATGGAGGTGCGTGACAGCCAGAACCTGAGGGTGAATTCAGTCTTCGCTCCTGAGGAATCCTGCGCCACCCGCGCTCCCTCCCGACCCATCGAGTCTCTGAAGCGTTTTGGATTCTTTGCGTACCTGCGGGAGCTCTTTGATGCTCCAGAAGAGGTTATGAGCTACCTCTGCAACCAGTACAAGGTGCACGATGTTCCCGTGGGAACGGACCAAACCAAAGCCATGATCAAGACGGTGATTGAGGAGCCCTACCTGAAGGTGCTTTACACAGCTGAGGAGAAGTACTCCCTGAAGAAGTCCTTTTACTCAGGCAAGACCAGTACCAGTAACTCTGCCGTGCGGCCCTCCCAGTACCTCACCATGGCCGTGGACGCCGAGGAGAAATGCCAGCTGGAGGAGCAGATCAGGACTGCTGAAAAGAGCATGCAAGCCATTGATGTCCAGATGAGTGCCATGCAGGAACGTACTGCCAAGCTGGATCACTGTGACAATGAGCTACGGGCCCAGAAAAAGGGGCTCTCGGAGATGAAGGGTAAAAAGAGACAGTTGGAACAGAAGATCAGTACCAAGCAGGACAGtcttcgGCAGATGGAGCAGGGGGGCATTGACCTACAGAAGGCTGAGGAGGAGACCAAGGCCCAGATCTCAGCAGTCAACTCCCAGAAGGTGGCCATTGTGGCTGAGTTCATGGCCCACATGAAGCTGAGGGCTAAGTTGAGTATGGAGAAGGTGTACATGGCTCTTGAGACCGTGGGCATGACAGCAGAGAAGACCAAGCTGGAGACTGACTGCAGGGAGGGCTCGGCCGAGCTCAGGATCCTAGAGcAAGCGTGTGCCATGCTGGAGCAGCGCAAGGCCCGTCTGTTGGAGATGTGTAAGGGCCTAATGAGGAGGGCCAGGGAGATCTGTAACATGGACCCTGGGGAGAGTGCTGTACCCCCAGACCTACACACGGCCTTCAGCCAGCTGCCCGACACTATGGATGAGATAGACGCCATGTTGAATGAGGAGAGGTCCAGGGCAGAGTGCTTCACTGGCCTCAGTGAGAATgtgGTGGATGAGTACaacaggagagagcaggagatcAAGAACCTGGAGAAAGAACTGGATGAGAAGAGCAATGCCCTGAAAACCTACAGACAGAACATATCAGAGGCAAAGGAGCGCTGGCTGAATCCTCTGAAGCAACTGGTAGAGCAGATCAATGACAAGTTCAGTGATTTCTTCCGCTCCATGCAGTGTGCCGGGGAGGTGGACCTGCATTCAGAGAACGAGGAGGAGTATGATAAATATGGGATCCGTATCCGGGTGAAGTTCCGTAGCAGCACGCAGCTCCACGAGCTCACAGCACACCACCAGAGTGGAGGGGAGCGCAGTGTCTCCACAATGCTCTACCTCATGGCCCTGCAAGAGCTCAACCGCTGTCCCTTCCGAGTGGTGGATGAGATCAACCAGGGTATGGATCCAGTCAATGAAAGGAGAGTCTTTGACATTGTTGTACGGACAGCCTGCAAGGAGACAACCTCCCAGTACTTCTTCATCACACCCAAGCTCCTTCAGAACCTCCAGTATGCAGATGAGATGACTGTCCTGTGTGTCCATAACGGACCTCACATGCTGCCCCCCAACAAGTGGGACGAGAAGGCCTTCACGAGACGCTGCCTCCGCCGCAAGGGCAAATAGTGAAATGACCAGTTCATGATTTTCTGAGCTCTCATTTTTGGTTTGACAGAAAAGATTTGTTGACAcaatcattatttttttttatacactgTTTAAATAGATACTTTGTAAATACTGTTCGATATGCATTGTTCAAATGTTATCTTTGAGATTGGAATAACTCCTTTTCACGGAGTCATTCCAATCTCAAAGATAACATGCTAATTGTAAAGATTCAAGTGCTGTTCTATTTTGGGTTGAGCAAATTAATAGTGGATTAAATGTTCTTGATGTGAAGCAGTCAGCAGGGCATgagatttgtttgttttttaatctAATGGTCTTTGCCTAGTTCTTAGGACATCATCAGTGTGAAATCAACAAGtttcacccccctccctcccattctaTCAATGGTCCTTTGATCAAATTAGATACCTTTAGACAATCAAAGACCATTGAGggaaacaaaatacttttttgctcatCACCTCAAAATGTGATCACACAATTGTACTAGAGTTGACAACTTCCTATGCAAATGGGCCACGGTGTAACAGAGTaccatttgatttgtttaacccttatCTTTAATATTGTAATGTTTCTGTGCTtttcatttcttttttttttcaacatttCAGAATAATGATCAATGACAGGAGTGATATTCAGTCTGCATAGATGACACTTTTTTTGTTTATGCTACCCAAGATTACTTCTATTATTTAAGGGTGTTCTAGTAAACTATTGTGCAAAGTAAACAAGTTATTACTCAA

Function

symbol description
smc5 Predicted to enable ATP binding activity. Predicted to act upstream of or within double-strand break repair via homologous recombination and sister chromatid cohesion. Predicted to be located in chromosome and nucleus. Predicted to be part of Smc5-Smc6 complex. Orthologous to human SMC5 (structural maintenance of chromosomes 5).

NR:

description
structural maintenance of chromosomes protein 5

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0030915 Smc5-Smc6 complex cellular_component

KEGG:

id description
K22803 SMC5; structural maintenance of chromosomes protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602355.2 True 4081 mRNA 0.49 24 28805226 28829428

Neighbor

gene id symbol gene type direction distance location
LOC110523556 LOC106566689 coding upstream 515 28796448 ~ 28804711 (+)
LOC110523554 LOC106566671 coding upstream 24495 28737461 ~ 28780731 (+)
pip5k1ba LOC106566653 coding upstream 72184 28720277 ~ 28733042 (+)
LOC110523549 LOC106567216 coding upstream 321841 28481432 ~ 28483385 (+)
LOC110522905 LOC106563371 coding upstream 329688 28473547 ~ 28475595 (+)
zfand5b zfand5b coding downstream 287 28829715 ~ 28837189 (+)
LOC110523559 LOC106566708 coding downstream 47145 28876573 ~ 28880143 (+)
spag8 LOC106566715 coding downstream 96835 28926263 ~ 28931410 (+)
ssna1 ssna1 coding downstream 175339 29004767 ~ 29009110 (+)
alad hem2 coding downstream 215675 29045103 ~ 29055942 (+)
G386065 NA non-coding upstream 34659 28756510 ~ 28770567 (+)
G386057 NA non-coding upstream 86204 28718802 ~ 28719022 (+)
G386044 NA non-coding upstream 99714 28705178 ~ 28705512 (+)
G386024 NA non-coding upstream 120212 28684742 ~ 28685014 (+)
G386022 NA non-coding upstream 122019 28682750 ~ 28683207 (+)
G386445 NA non-coding downstream 23452 28852880 ~ 28853151 (+)
G386537 NA non-coding downstream 132389 28961817 ~ 28965648 (+)
G386568 LOC106566731 non-coding downstream 164717 28994145 ~ 28995123 (+)
G386606 NA non-coding downstream 241384 29070812 ~ 29073163 (+)
G385805 NA other upstream 387671 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 900495 27904467 ~ 27904731 (+)
G385053 NA other upstream 1098148 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 1121833 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 2141613 26661838 ~ 26663613 (+)
tbx5a LOC106566939 other downstream 912372 29741800 ~ 29763439 (+)
G387516 NA other downstream 1067558 29896986 ~ 29898134 (+)
G388019 NA other downstream 1457523 30286951 ~ 30287824 (+)
G390184 NA other downstream 3130927 31960355 ~ 31960745 (+)

Expression


Co-expression Network