zfand5b (zfand5b)


Basic Information

Item Value
gene id zfand5b
gene name zfand5b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28829715 ~ 28837189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602357.2
aaaaaaataaaacagaagcGGAAAACAGTCAGGAGCTTCTCTAGCGGGCGTACTTTTAGACGGAGCCCTTAGTATCTCAGGAAGGGGAACGGAGAGTCTGCCAGGACTTTTTGTACAGCGAACGACCAACTAACGTTACAGTGCAAAAACACTAGTTCTGACGGACAATTCAATCAGCAGAGATGGCACAGGAGACCAATCAGAGCCAAGCGCCCATGCTTTGTGCCACCGGCTGTGGTTTCTTTGGAAACCCCAGGACCAGTGGCATGTGCTCTGTCTGCTATAAGGACCACCTGACCAGACAGAACAATGGAGTGAGCCCCCTGAGTGCAATGGGTGGCAGTGTGTCCAGTAGCCCCACAATGGAGACCTCGACCATCCAGAGAATTGAGGCATCCTTGAataatgctgctgctgctgaagcGGAGGCCGAAGCTGCCAGTGGGGCAGCAGCTCTTCCTGTTACCCAACAGATGACCGAGATGAGCATTTCCTGTGAAGAGGAAGGAGCGTCGCCTAGAGCAGAGCTTGCAGAACCTGTGGTCACTCAGCCCACCGCCTCAGCTTCCCCTCCTAGTGCTGCCGGCAGTGATGAATCCAAATCACCCGACTCCGCCAAACCGAAAAAGAACAGGTGCTTCATGTGCCGCAAGAAGGTTGGCCTTACAGGTTTTGACTGCCGCTGTGGGAACCTGTTCTGTGGACTCCACCGTTATTCAGACAAGCACAACTGCCCGTATGACTACAAAGCCGACGCCGCCGCCAAGATCCGCAAGGAGAACCCTGTGGTGGTGGCTGACAAGATCCAGAGAATATAAGACCTTCTCTCACTTTGACCTTGAACACTTGGAGTGATTGGCAAAAAAAAGGACTCGCGCTTGACCTGCGTTCTAAAGGactagttttttttgtttttttttacagtatggGGGGAATCCAGTTGTCTGCAATGCATGAACGATCACATTTTTCTTCTGTTTTCTGTCTGAGCTTACGATTTTACAAAAAATTAAAGACAAAAGAAGAACTAAAAAAAATCAGCAGACTAGGACACTCTTTTCCAGGGACGCCTGGACCTGGCTTAATTCTTAGTGTTTTTTGGGAATCTGATTGTTGTCAAGTAGGCGGTCTGATGTGTTGTGGTTGTCATGAGTTTACTACTTTGACTCTGTATTTATGAGATTTTTCTGAGGAGATGGGGGACGTTGTAGCCTATAAGACTGTTACAGCCCCGACCGGATCAGTCCATTTATATGTACTACCAGACATGTTTGTGTCTGTGCTGTATGGGGCCTCAATTCAGGGGAGACCCCCAAGCACATTCTCTATTGTGAGATCAGATGTGAAGAAGTGACTTTAACAAATGaagtcttttattttttttatcacctAAAGAACAACCTGTTCAAGATGCTTATGAAATGATCATCCAGTATGAATGGTGAAAGCGGCACTGACACTTGGAGGATGGATGTGTTCTGTTCCAGCCCTATAGGTTCTCATCAGATTCATCTGAATCAAACAGAATATCAGTGTACTCATACAAGCCTGCTCCACTGGTTCATTCTTCCTGCAATGTGTGCTGCACTAAAAACCATTGCTTAGGTTTACTTGTATCCGTTAAAGATGGGGTTTCTAAAAAGTATTTAGGTCTGATGCTGTGATGTAATGTGTATTTGAAGGGGAAACTTGGCGCTGCCTTTGTCTGGCTGGATGGGAGACTGGCGGAAGACCGTTCACTTCCTGCAATTGAGATCGGGTcatgtgaccccaaactgttgtcaTGTGACAGTGCTGATGCACATTCTGTGATCTTATTTGAGGATATGGGATGTTTTGCTTGGGTTGTTGTATCAATGACAAATAGCCTAAATTAACCAGATTGCTGAGGTTGGAAGGGTTAGGTCCACTAATCTTTTGATCAATATTTCCCAGAAAATGTGTGAATAATCAGAAATATATATTGTGTAGTGCGAATCACATGCTATGTATTAAACACATGTCTAATGTATGCCatttgatggatggatggtggcTGAGTATTGTGTGCAAGTACCTGTGTTCCTCAGTAGTCAGAACTGATCCAGTGgactttttttgtgtgtctggCTGCTCAGCTCTAGTCTCTCGGTAGGGCTGTGAGATTTCACCTTTTTCATTTTAACCCTTTTTAGTTATGCAAGTTTGTACAAACCATCTTTATATTTATGTACCGCACATATAATCTTGTTACCCAACATTACAGCAAAATTGTACCATGTAAATAAAATTATGTACAGAGATATAGAA

Function

symbol description
zfand5b Predicted to enable DNA binding activity and zinc ion binding activity. Orthologous to human ZFAND5 (zinc finger AN1-type containing 5).

NR:

description
AN1-type zinc finger protein 5

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24687 ZFAND5_6; AN1-type zinc finger protein 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602357.2 True 2289 mRNA 0.45 6 28829715 28837189

Neighbor

gene id symbol gene type direction distance location
smc5 smc5 coding upstream 287 28805226 ~ 28829428 (+)
LOC110523556 LOC106566689 coding upstream 25004 28796448 ~ 28804711 (+)
LOC110523554 LOC106566671 coding upstream 48984 28737461 ~ 28780731 (+)
pip5k1ba LOC106566653 coding upstream 96673 28720277 ~ 28733042 (+)
LOC110523549 LOC106567216 coding upstream 346330 28481432 ~ 28483385 (+)
LOC110523559 LOC106566708 coding downstream 39384 28876573 ~ 28880143 (+)
spag8 LOC106566715 coding downstream 89074 28926263 ~ 28931410 (+)
ssna1 ssna1 coding downstream 167578 29004767 ~ 29009110 (+)
alad hem2 coding downstream 207914 29045103 ~ 29055942 (+)
LOC110522906 LOC106563306 coding downstream 224086 29061275 ~ 29067123 (+)
G386065 NA non-coding upstream 59148 28756510 ~ 28770567 (+)
G386057 NA non-coding upstream 110693 28718802 ~ 28719022 (+)
G386044 NA non-coding upstream 124203 28705178 ~ 28705512 (+)
G386024 NA non-coding upstream 144701 28684742 ~ 28685014 (+)
G386022 NA non-coding upstream 146508 28682750 ~ 28683207 (+)
G386445 NA non-coding downstream 15691 28852880 ~ 28853151 (+)
G386537 NA non-coding downstream 124628 28961817 ~ 28965648 (+)
G386568 LOC106566731 non-coding downstream 156956 28994145 ~ 28995123 (+)
G386606 NA non-coding downstream 233623 29070812 ~ 29073163 (+)
G385805 NA other upstream 412160 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 924984 27904467 ~ 27904731 (+)
G385053 NA other upstream 1122637 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 1146322 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 2166102 26661838 ~ 26663613 (+)
tbx5a LOC106566939 other downstream 904611 29741800 ~ 29763439 (+)
G387516 NA other downstream 1059797 29896986 ~ 29898134 (+)
G388019 NA other downstream 1449762 30286951 ~ 30287824 (+)
G390184 NA other downstream 3123166 31960355 ~ 31960745 (+)

Expression


Co-expression Network