spag8 (LOC106566715)


Basic Information

Item Value
gene id spag8
gene name LOC106566715
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28926263 ~ 28931410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602360.2
CTTCCACAACAGAATAATAAATAGTGGTAGCTACGTTTAGCTagaagcaagctagctagctacatcaacTATCTTGGTTTCACAAGATAAATGAGCGATTTCACACTACTAACTAAGTGCATTGTAATGAAAATATAATGACTGCATTGGACACTTCTGTTGAACAAAAATCTATTGGAAAATGTTTGCTGTATAACTGGGTAGAGGAGCGGGCCACTGCCGTCCTTGACAATGAGAGGCCCAGAGCGCACATCCACAAAAATGGACATAAAGGGATTCTCACCATGGATCTGTCATCCAAAGTTCAAGGTGTCACCACAGTGAATGCTGCTTTCACCCCTCCCAGGGGTCATGGGGTGAGACAAAGAGGCCTCAGAGGAGAACTTTTGGAAAATGATCTGCTCAAGAAAATAAGtgagcagacacatgcagaaTTTAATCCTGAGCCTCCCAAAACAGAATTCTGCTCCACTACCAAAGAGGACTACAAAGTTGAAGGCTTTCTGCCTTCCCTGCCTTCACCACTAAAGGTGCATGACTACAAAAGCGATCAGGCAATTACCTTTTGGAGTGAGAATCATCATCAGATACAGGGTGTGACAGCGGTGAGAACCAGGGATACCCCATTCAAGAAGAATGCCACCTTCAGCACACCTATCAGTGAACACATGGATGACAAGCCTATTCTGTACACACCGGAGAATTAAGCTGTTACTCATTGGACACAGTGGTATTAAATTATTGTTCCATAATATTGTGTATGAATATTGCTCTGTTTATCATTTCAATTAACTAGTCTCTGCACTGTATATGAATTGCAAAAGTACTGCACAAATGATTTAACACAAGCAGACAGATGAATGGTTTTGAATTGTAACTTTATCTCAGGGTCCTTGTCTCCTTGCAGAAttacagttgttgttttttttattcataCCAGAGCTTTGTATTAAGAATATTCTCTCTGTTTGTTCATGCTTTTATTTTTGTTTGTAGGTTATTTTCTCCTATGGTCTTTTTCTCAAACCTTTGCAACTTGTAATTACCACAAATGAGCAGTGCTGAACAACAGAAAGCCACATGTTCCACTTTCCTCTGTGCTGGGCAAAAATGGATCTGGCTATTGTCCTTGGACAAATGGCAAGAAAACCATTTGTTTTTTGAGATGAGGAAAGTGTTTTTCCAACGTTAAAAAGAGAGGCACACAGAACCCTCCGCCTTACAGATGTCAGAAATATTGATGTTCATATTGATGTTCATGCAGCCTCCTCACTTTAGAGAGCATGGCTCTGATTCAGATTCGTGTTCTGTCAATCAAGAGACATATCTACAttgtgtccctctctcctcttgctttcaGCAGAGATTATGAGGAGGTAGCTATGGCAACAAGTAATTTTAGACTACATTTATGCAAATTATCCCCCAAAACATTTCCTTACCTCATGGGATTAGAGGGGGAAACAATTGATGTCTGAAACAGATGACATTTAGCTACTTCCAGCCAAGTGAAATATATTGCATATAATTGTTTTAATTCAAATTAACTGTGAAAAAGTAAATATTTCCTTGAATAAATTTGGCTACTAATTTTCTTCCATGATTCAATTAAATTAATAATGTATGTTTTGATCTATACATAACTGTGTATTTATTTAAGTTTATAAAACATGTATTACAATACTTCATTCTCTGTATTTCCCTGTGAAGGGAGCACTGCTCTGAGTTATTCAAATGAATGTAGTGCTTTTGTCAGAGGAGACAAATGTTGAACCATCTTATGAACTATGTGCTTgtgatacagtaggcctacataccTGCAGTAGAAATTCCTTCAATGCATTCCCCCGTCAAAAGTTCCCTTCTtggttgttgttgtctctcctCCCAAATTGTATCAAAAATGCTAATGGCGTTCTTCACCCTCCCTTCAACTCTCTTCAAAAGATAAAACCAGGAGCCTTTGATGACTCAACAATTA
>TU438959
TAATAAATAGTGGTAGCTACGTTTAGCTagaagcaagctagctagctacatcaacTATCTTGGTTTCACAAGATAAATGAGCGATTTCACACTACTAACTAAGTGCATTGTAATGAAAATATAATGACTGCATTGGACACTTCTGTTGAACAAAAATCTATTGGAAAATGTTTGCTGTATAACTGGGTAGAGGAGCGGGCCACTGCCGTCCTTGACAATGAGAGGCCCAGAGCGCACATCCACAAAAATGGACATAAAGGGATTCTCACCATGGATCTGTCATCCAAAGTTCAAGGTGTCACCACAGTGAATGCTGCTTTCACCCCTCCCAGGGGTCATGGGGTGAGACAAAGAGtgagcagacacatgcagaaTTTAATCCTGAGCCTCCCAAAACAGAATTCTGCTCCACTACCAAAGAGGACTACAAAGTTGAAGGCTTTCTGCCTTCCCTGCCTTCACCACTAAAGGTGCATGACTACAAAAGCGATCAGGCAATTACCTTTTGGAGTGAGAATCATCATCAGATACAGGGTGTGACAGCGGTGAGAACCAGGGATACCCCATTCAAGAAGAATGCCACCTTCAGCACACCTATCAGTGAACACATGGATGACAAGCCTATTCTGTACACACCGGAGAATTAAGCTGTTACTCATTGGACACAGTGGTTATTTTCTCCTATGGTCTTTTTCTCAAACCTTTGCAACTTGTAATTACCACAAATGAGCAGTGCTGAACAACAGAAAGCCACATGTTCCACTTTCCTCTGTGCTGGGCAAAAATGGATCTGGCTATTGTCCTTGGACAAATGGCAAGAAAACCATTTGTTTTTTGAGATGAGGAAAGTGTTTTTCCAACGTTAAAAAGAGAGGCACACAGAACCCTCCGCCTTACAGATGTCAGAAATATTGATGTTCATATTGATGTTCATGCAGCCTCCTCACTTTAGAGAGCATGGCTCTGATTCAGATTCGTGTTCTGTCAATCAAGAGACATATCTACAttgtgtccctctctcctcttgctttcaGCAGAGATTATGAGGAGGTAGCTATGGCAACAAGTAATTTTAGACTACATTTATGCAAATTATCCCCCAAAACATTTCCTTACCTCATGGGATTAGAGGGGGAAACAATTGATGTCTGAAACAGATGACATTTAGCTACTTCC
>TU438960
GCAGGGAAACAGTAAGAGTAAATGTCAACAGATCAACACTTCTTGGAAGCTGCTCAACGTGAGAATTAAATTTGGATCTGTGGAAACCAGTTATGAAGAGATAGGACAGGGAGTTTACACCACACATCAGTATGTTATGACAACCTGTATGAATAATGTAGAATAACAGTGGAACAATGTTATTTTGATTCATATGATAATGAATGTATTATTATGCATATTCATACACTAATCATGTAAGCCTAAGAATAACTAGCCTTTATCACTGCATAGACCTTACACACAGCAATGCAGCTACTGATAGATTTAAAAATAGTAATCTAAAGTTCAGCAATGTGAACATGTGAGAAAACAATGTCAGAGTAGCAGAGGCAGATAAGGCTATTGCTGTAGGTTCTCATGCTGATATGGCCTTCCTCCTCTATCCCACAgtgagcagacacatgcagaaTTTAATCCTGAGCCTCCCAAAACAGAATTCTGCTCCACTACCAAAGAGGACTACAAAGTTGAAGGCTTTCTGCCTTCCCTGCCTTCACCACTAAAGGTGCATGACTACAAAAGCGATCAGGCAATTACCTTTTGGAGTGAGAATCATCATCAGATACAGGGTGTGACAGCGGTGAGAACCAGGGATACCCCATTCAAGAAGAATGCCACCTTCAGCACACCTATCAGTGAACACATGGATGACAAGCCTATTCTGTACACACCGGAGAATTAAGCTGTTACTCATTGGACACAGTGGTTATTTTCTCCTATGGTCTTTTTCTCAAACCTTTGCAACTTGTAATTACCACAAATGAGCAGTGCTGAACAACAGAAAGCCACATGTTCCACTTTCCTCTGTGCTGGGCAAAAATGGATCTGGCTATTGTCCTTGGACAAATGGCAAGAAAACCATTTGTTTTTTGAGATGAGGAAAGTGTTTTTCCAACGTTAAAAAGAGAGGCACACAGAACCCTCCGCCTTACAGATGTCAGAAATATTGATGTTCATATTGATGTTCATGCAGCCTCCTCACTTTAGAGAGCATGGCTCTGATTCAGATTCGTGTTCTGTCAATCAAGAGACATATCTACAttgtgtccctctctcctcttgctttcaGCAGAGATTATGAGGAGGTAGCTATGGCAACAAGTAATTTTAGACTACATTTATGCAAATTATCCCCCAAAACATTTCCTTACCTCATGGGATTAGAGGGGGAAACAATTGATGTCTGAAACAGATGACATTTAGCTACTTCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602360.2 False 1981 mRNA 0.39 6 28926263 28931410
TU438959 False 1176 TUCP 0.43 6 28926277 28930931
TU438960 True 1253 lncRNA 0.40 4 28927816 28930931

Neighbor

gene id symbol gene type direction distance location
LOC110523559 LOC106566708 coding upstream 46120 28876573 ~ 28880143 (+)
zfand5b zfand5b coding upstream 89074 28829715 ~ 28837189 (+)
smc5 smc5 coding upstream 96835 28805226 ~ 28829428 (+)
LOC110523556 LOC106566689 coding upstream 121552 28796448 ~ 28804711 (+)
LOC110523554 LOC106566671 coding upstream 145532 28737461 ~ 28780731 (+)
ssna1 ssna1 coding downstream 73357 29004767 ~ 29009110 (+)
alad hem2 coding downstream 113693 29045103 ~ 29055942 (+)
LOC110522906 LOC106563306 coding downstream 129865 29061275 ~ 29067123 (+)
coq4 coq4 coding downstream 158115 29089525 ~ 29097342 (+)
LOC110523572 zmynd19 coding downstream 185081 29116491 ~ 29121227 (+)
G386445 NA non-coding upstream 73112 28852880 ~ 28853151 (+)
G386065 NA non-coding upstream 155696 28756510 ~ 28770567 (+)
G386057 NA non-coding upstream 207241 28718802 ~ 28719022 (+)
G386044 NA non-coding upstream 220751 28705178 ~ 28705512 (+)
G386024 NA non-coding upstream 241249 28684742 ~ 28685014 (+)
G386537 NA non-coding downstream 30407 28961817 ~ 28965648 (+)
G386568 LOC106566731 non-coding downstream 62735 28994145 ~ 28995123 (+)
G386606 NA non-coding downstream 139402 29070812 ~ 29073163 (+)
LOC110523576 LOC106563296 non-coding downstream 242938 29174319 ~ 29187968 (+)
G386814 NA non-coding downstream 265477 29196887 ~ 29197098 (+)
G385805 NA other upstream 508708 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 1021532 27904467 ~ 27904731 (+)
G385053 NA other upstream 1219185 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 1242870 27675352 ~ 27719165 (+)
G383794 LOC106566282 other upstream 2262650 26661838 ~ 26663613 (+)
tbx5a LOC106566939 other downstream 810390 29741800 ~ 29763439 (+)
G387516 NA other downstream 965576 29896986 ~ 29898134 (+)
G388019 NA other downstream 1355541 30286951 ~ 30287824 (+)
G390184 NA other downstream 3028945 31960355 ~ 31960745 (+)
G390393 NA other downstream 3288771 32220181 ~ 32220533 (+)

Expression


Co-expression Network