ssna1 (ssna1)


Basic Information

Item Value
gene id ssna1
gene name ssna1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29004767 ~ 29009110 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602365.2
AATAGTGACGTACGTGTGGTTGCGGAAGTCATAAAAGTGTGGCGGAAGTGTACGTGACAGTTTGTTAGCTAGTTGTCGTGGAAACAAGCTAAATGGAGGGATTTTGAAGCTAGTTAAGGACAGTGTCGGTGTCgagaaggagtccatatcgactGCCTACATCTTTGCACAAATGAGCCAGTTTACAAACTAGTTAAACCTAGCGAGAGTTATCTGTAGCAATACCTTGGCTTCAAACTGCAAAGTTATCATTGAGTCGCTAACTAACGTAGATAGTACTCTGGCTGTGTGCGCGGGGAAGGGCCCTGAAGAGCTGGAAAAGTAAGTATAATCGACAACATCATGACCCAACAAGGAGCAGCGCTACAAACCTACAACAATGAGCTTGTCAAGTGTATCGAGGAGCTGTGCTCTAAGAGGGATGAGTTGAACCGTCAGAtacagctggaggaggaggagaaaggtcgTCTACAACACGACATTCGTGTCCTCACTGAGAAGCTAAGCCGCGTCAATGAGAGCTTGGCCAGACGACTCACCGCCCGCGCTGACTTTGACCGCACCATCGCTGAGACTGAGGCTGCCTATATGAAGATTCTGGAGAGCTCTCAGACACTGCTGAGTGTACTAAAAAAGGAAGCGGGAAATCTCGGCAAAGCCACTGAACCCAGAGGGAAAGACCACTGACGTCCAGACTACCTTCCCTCTCACCCAGATACCAGCACTTCCCCTCACCATCTCATCTAGAACTGTTTGTAATATATTTATGTAAAAATGTTTTGAATATCTAATTCTGCCCTTTACTGGTGTACTTATTTTATATCAATTGTATTATTTTAATAAAGTTTGAAGATTCCCTTCACATTTGCCATGTATGGAACCAA

Function

symbol description
ssna1 Predicted to be active in centrosome and ciliary basal body. Orthologous to human SSNA1 (SS nuclear autoantigen 1).

NR:

description
Sjoegren syndrome nuclear autoantigen 1

GO: NA

KEGG:

id description
K16780 SSNA1; sjoegren syndrome nuclear autoantigen 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602365.2 True 884 mRNA 0.45 3 29004767 29009110

Neighbor

gene id symbol gene type direction distance location
spag8 LOC106566715 coding upstream 73357 28926263 ~ 28931410 (+)
LOC110523559 LOC106566708 coding upstream 124624 28876573 ~ 28880143 (+)
zfand5b zfand5b coding upstream 167578 28829715 ~ 28837189 (+)
smc5 smc5 coding upstream 175339 28805226 ~ 28829428 (+)
LOC110523556 LOC106566689 coding upstream 200056 28796448 ~ 28804711 (+)
alad hem2 coding downstream 35993 29045103 ~ 29055942 (+)
LOC110522906 LOC106563306 coding downstream 52165 29061275 ~ 29067123 (+)
coq4 coq4 coding downstream 80415 29089525 ~ 29097342 (+)
LOC110523572 zmynd19 coding downstream 107381 29116491 ~ 29121227 (+)
tmem141 tmem141 coding downstream 124734 29133844 ~ 29135483 (+)
G386568 LOC106566731 non-coding upstream 9644 28994145 ~ 28995123 (+)
G386537 NA non-coding upstream 39119 28961817 ~ 28965648 (+)
G386445 NA non-coding upstream 151616 28852880 ~ 28853151 (+)
G386065 NA non-coding upstream 234200 28756510 ~ 28770567 (+)
G386606 NA non-coding downstream 61702 29070812 ~ 29073163 (+)
LOC110523576 LOC106563296 non-coding downstream 165238 29174319 ~ 29187968 (+)
G386814 NA non-coding downstream 187777 29196887 ~ 29197098 (+)
G386815 NA non-coding downstream 188021 29197131 ~ 29197363 (+)
G386846 NA non-coding downstream 267691 29276801 ~ 29277657 (+)
G385805 NA other upstream 587212 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 1100036 27904467 ~ 27904731 (+)
G385053 NA other upstream 1297689 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 1321374 27675352 ~ 27719165 (+)
tbx5a LOC106566939 other downstream 732690 29741800 ~ 29763439 (+)
G387516 NA other downstream 887876 29896986 ~ 29898134 (+)
G388019 NA other downstream 1277841 30286951 ~ 30287824 (+)
G390184 NA other downstream 2951245 31960355 ~ 31960745 (+)
G390393 NA other downstream 3211071 32220181 ~ 32220533 (+)

Expression


Co-expression Network