LOC110522906 (LOC106563306)


Basic Information

Item Value
gene id LOC110522906
gene name LOC106563306
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29061275 ~ 29067123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110522906
CATCTACTCTCACATTTTTCTGTTCTCATCTTTAAACCACTCGTCTCTCTCACCCAACATCCTCCTCTCTACTGTGCTGGCCAGCTTTGGGACACAGAGCGGCCCGATGGCACCATTACCATGGTGCACAGCTCCAGCATGCTCCAATTCAACTGGGGCTACACCCAGTTCTCCCAGTTCAACACTGACGACACCCTGCTATTGGTGTCTGGAGTCTACCTGggctctaatcaatCTTCCTCTGGGGAGATTGCTGTCATCTGTCTTgAGAACTACACCCTCCTGTCCTGTGTGAGGAACAAGCCCTACGATGTGTTTGGCTGCTGGCTGAACGAGACCCACCTCGTCTCTGGCAACCTGCGCTGGATCGGCAACATGACCTCCTGCTCTGTGCTCCGGCTCAATAAAGCCTTTCAGGGAGAGGACAAGACCTACCTGCTCTTCACCACCGGAGCCTTACCTACTCCCCCCACCAGATAGGTATCAAGTGGATCATGCCTGACCAGATGATCACGTCTGGGCCTGTCCTGGGGGAGTGCAGCACAGACAAGTTCTTTGACTCTGTAGACCATGTGATCGGCATGGGCCTGTCTCCAGACCACAGGTATCTGTATGTGAACAGTCGAGCGTGGCTGGCGGGCTGGGTGATCTCTGACCCCATGTCTCCGCACCCCATCGCTGAGGAGATTGACCTGCATGTCATTGACCTGAATAGCCTGCGGGAGGAGAGGCGGAGCCCTTAGGCCCACcgagcatacgcccccgcccatATTGAAtcgatccctatcccagtctgctgttcccacatgtttCAAAGGGGCCaaaattgttcctgttcccaagaaagctaa

Function

NR:

description
F-box/WD repeat-containing protein 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110522906 True 851 mRNA 0.55 5 29061275 29067123

Neighbor

gene id symbol gene type direction distance location
alad hem2 coding upstream 5333 29045103 ~ 29055942 (+)
ssna1 ssna1 coding upstream 52165 29004767 ~ 29009110 (+)
spag8 LOC106566715 coding upstream 129865 28926263 ~ 28931410 (+)
LOC110523559 LOC106566708 coding upstream 181132 28876573 ~ 28880143 (+)
zfand5b zfand5b coding upstream 224086 28829715 ~ 28837189 (+)
coq4 coq4 coding downstream 22402 29089525 ~ 29097342 (+)
LOC110523572 zmynd19 coding downstream 49368 29116491 ~ 29121227 (+)
tmem141 tmem141 coding downstream 66721 29133844 ~ 29135483 (+)
LOC110523574 LOC106566787 coding downstream 73710 29140833 ~ 29166510 (+)
LOC110523576 LOC106563296 coding downstream 107196 29174319 ~ 29187968 (+)
G386568 LOC106566731 non-coding upstream 66152 28994145 ~ 28995123 (+)
G386537 NA non-coding upstream 95627 28961817 ~ 28965648 (+)
G386445 NA non-coding upstream 208124 28852880 ~ 28853151 (+)
G386065 NA non-coding upstream 290708 28756510 ~ 28770567 (+)
G386606 NA non-coding downstream 3689 29070812 ~ 29073163 (+)
G386814 NA non-coding downstream 129764 29196887 ~ 29197098 (+)
G386815 NA non-coding downstream 130008 29197131 ~ 29197363 (+)
G386846 NA non-coding downstream 209678 29276801 ~ 29277657 (+)
G385805 NA other upstream 643720 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 1156544 27904467 ~ 27904731 (+)
G385053 NA other upstream 1354197 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 1377882 27675352 ~ 27719165 (+)
tbx5a LOC106566939 other downstream 674677 29741800 ~ 29763439 (+)
G387516 NA other downstream 829863 29896986 ~ 29898134 (+)
G388019 NA other downstream 1219828 30286951 ~ 30287824 (+)
G390184 NA other downstream 2893232 31960355 ~ 31960745 (+)
G390393 NA other downstream 3153058 32220181 ~ 32220533 (+)

Expression


Co-expression Network