coq4 (coq4)


Basic Information

Item Value
gene id coq4
gene name coq4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29089525 ~ 29097342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977216.1
atgggactcccaatcacggccggttgtgatacagtctgaattcgaaccagggtgtctgtagtgacgcagtgccttagaccgctgcaccattcAGGAGCCCCAGCGCAGAGATGGACACCCTACCACTGTCACATCCGCCACTCGAGGCCCTGAACATCAGATGCTTTCACACAAGTGCACACTATGGGAGAAAGCCCTTTGTGTCCGGCAGCTTCACCATGGCGTGGACTCTGCAGACGTGCAGTATGACGGACTGTACCCAGGCCACATCCCCACCAGCCCCATCCAGAAAGCACTGTTGGCTGTCGGCTCCGGGGTGGCAGCTCTGCAAGACCCCTACAGACATGACATGGTGGCAGTGCTGGGAGAGACGACAGGACACCTGGCCCTGATGACGCTTCGGGATCGAATGAGAGGAGACCCTGAGGGCTATACCATTCTAACTGAGCGCCCACGGATCAGACTATCCACATTGGATCTGTCCAAGATGGCTTCCCTTCCAGATGGATCCTTTGGGAGAGAGTACCTGCGCTTCCTTGAGGACAATAGGGTGACCCCTGACTCGAGGGTGAACGTGAAATTTGTAGATAATGAGGAGTTGGCGTATGTCATGCAGCGGTACCGAGAAGTCCACGATTTACTGCACACCTTACTAGGCATGCCCACTAACATGCTGGGTGAAGTGGCAGTAAAGTGGTTTGAGGCTGCTCAAACTGGCCTGCCCATGTGCATCCTGGGAGCAGCGTTGGGACCGCTCCGTCTGTCCACAAGTCGTCTGGAGCCCTTGGTGACGTCCCTGGGACCGTGGGCTGTGAGGAATGGCCGGCAGGCCCGCTGTGTCTTCAGCATCTTCTACGAGCGCCGCTGGGAGCAGAGTCTGGAGGACCTGAGAAAGGAGCTGAACATCGAGCCTCCCCCGCTCACCATCACGGCCACCAGCCAGAAAGCCACATTAGATTTGTAGCACTGACCTCGAATGTCAGAGGTCACTGTACAACCA
>XM_021602374.2
ACACAATAGTTCCATTATGAGTGACACatttccagtccatttaaaattaACTCATTATTCCCTTGCCCTTTTCAACACTCTTTTAACCGTCATGACACGTCATCACGTCCGCTTCATTTTTGGTAAAAGGCGCCTGTGCCAGCCAGCGCATAACAAAGAAATGTTGCGTTCACTCCTCGTTTCAAGTCGAAGAAGCACTGGTAGGGGTGCGTTTATGTTCGAAGCCCTTTGTGTCCGGCAGCTTCACCATGGCGTGGACTCTGCAGACGTGCAGTATGACGGACTGTACCCAGGCCACATCCCCACCAGCCCCATCCAGAAAGCACTGTTGGCTGTCGGCTCCGGGGTGGCAGCTCTGCAAGACCCCTACAGACATGACATGGTGGCAGTGCTGGGAGAGACGACAGGACACCTGGCCCTGATGACGCTTCGGGATCGAATGAGAGGAGACCCTGAGGGCTATACCATTCTAACTGAGCGCCCACGGATCAGACTATCCACATTGGATCTGTCCAAGATGGCTTCCCTTCCAGATGGATCCTTTGGGAGAGAGTACCTGCGCTTCCTTGAGGACAATAGGGTGACCCCTGACTCGAGGGTGAACGTGAAATTTGTAGATAATGAGGAGTTGGCGTATGTCATGCAGCGGTACCGAGAAGTCCACGATTTACTGCACACCTTACTAGGCATGCCCACTAACATGCTGGGTGAAGTGGCAGTAAAGTGGTTTGAGGCTGCTCAAACTGGCCTGCCCATGTGCATCCTGGGAGCAGCGTTGGGACCGCTCCGTCTGTCCACAAGTCGTCTGGAGCCCTTGGTGACGTCCCTGGGACCGTGGGCTGTGAGGAATGGCCGGCAGGCCCGCTGTGTCTTCAGCATCTTCTACGAGCGCCGCTGGGAGCAGAGTCTGGAGGACCTGAGAAAGGAGCTGAACATCGAGCCTCCCCCGCTCACCATCACGGCCACCAGCCAGAAAGCCACATTAGATTTGTAGCACTGACCTCGAATGTCAGAGGTCACTGTACAACCA
>XM_021602375.2
ACACAATAGTTCCATTATGAGTGACACatttccagtccatttaaaattaACTCATTATTCCCTTGCCCTTTTCAACACTCTTTTAACCGTCATGACACGTCATCACGTCCGCTTCATTTTTGGTAAAAGGCGCCTGTGCCAGCCAGCGCATAACAAAGAAATGTTGCGTTCACTCCTCGTTTCAAGTCGAAGAAGCACTGCCCTTTGTGTCCGGCAGCTTCACCATGGCGTGGACTCTGCAGACGTGCAGTATGACGGACTGTACCCAGGCCACATCCCCACCAGCCCCATCCAGAAAGCACTGTTGGCTGTCGGCTCCGGGGTGGCAGCTCTGCAAGACCCCTACAGACATGACATGGTGGCAGTGCTGGGAGAGACGACAGGACACCTGGCCCTGATGACGCTTCGGGATCGAATGAGAGGAGACCCTGAGGGCTATACCATTCTAACTGAGCGCCCACGGATCAGACTATCCACATTGGATCTGTCCAAGATGGCTTCCCTTCCAGATGGATCCTTTGGGAGAGAGTACCTGCGCTTCCTTGAGGACAATAGGGTGACCCCTGACTCGAGGGTGAACGTGAAATTTGTAGATAATGAGGAGTTGGCGTATGTCATGCAGCGGTACCGAGAAGTCCACGATTTACTGCACACCTTACTAGGCATGCCCACTAACATGCTGGGTGAAGTGGCAGTAAAGTGGTTTGAGGCTGCTCAAACTGGCCTGCCCATGTGCATCCTGGGAGCAGCGTTGGGACCGCTCCGTCTGTCCACAAGTCGTCTGGAGCCCTTGGTGACGTCCCTGGGACCGTGGGCTGTGAGGAATGGCCGGCAGGCCCGCTGTGTCTTCAGCATCTTCTACGAGCGCCGCTGGGAGCAGAGTCTGGAGGACCTGAGAAAGGAGCTGAACATCGAGCCTCCCCCGCTCACCATCACGGCCACCAGCCAGAAAGCCACATTAGATTTGTAGCACTGACCTCGAATGTCAGAGGTCACTGTACAACCA

Function

symbol description
coq4 Predicted to act upstream of or within ubiquinone biosynthetic process. Predicted to be located in mitochondrial inner membrane. Predicted to be extrinsic component of mitochondrial inner membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in primary coenzyme Q10 deficiency 7. Orthologous to human COQ4 (coenzyme Q4).

NR:

description
ubiquinone biosynthesis protein COQ4 homolog, mitochondrial-like isoform X2

GO: NA

KEGG:

id description
K18586 COQ4; ubiquinone biosynthesis protein COQ4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977216.1 False 1000 mRNA 0.57 7 29089525 29097342
XM_021602374.2 False 1030 mRNA 0.54 7 29092760 29097342
XM_021602375.2 True 1006 mRNA 0.54 7 29092760 29097342

Neighbor

gene id symbol gene type direction distance location
LOC110522906 LOC106563306 coding upstream 22402 29061275 ~ 29067123 (+)
alad hem2 coding upstream 33583 29045103 ~ 29055942 (+)
ssna1 ssna1 coding upstream 80415 29004767 ~ 29009110 (+)
spag8 LOC106566715 coding upstream 158115 28926263 ~ 28931410 (+)
LOC110523559 LOC106566708 coding upstream 209382 28876573 ~ 28880143 (+)
LOC110523572 zmynd19 coding downstream 19149 29116491 ~ 29121227 (+)
tmem141 tmem141 coding downstream 36502 29133844 ~ 29135483 (+)
LOC110523574 LOC106566787 coding downstream 43491 29140833 ~ 29166510 (+)
LOC110523576 LOC106563296 coding downstream 76977 29174319 ~ 29187968 (+)
LOC110523578 LOC106566868 coding downstream 157296 29254638 ~ 29262641 (+)
G386606 NA non-coding upstream 16362 29070812 ~ 29073163 (+)
G386568 LOC106566731 non-coding upstream 94402 28994145 ~ 28995123 (+)
G386537 NA non-coding upstream 123877 28961817 ~ 28965648 (+)
G386445 NA non-coding upstream 236374 28852880 ~ 28853151 (+)
G386814 NA non-coding downstream 99545 29196887 ~ 29197098 (+)
G386815 NA non-coding downstream 99789 29197131 ~ 29197363 (+)
G386846 NA non-coding downstream 179459 29276801 ~ 29277657 (+)
G386918 NA non-coding downstream 197836 29295178 ~ 29295389 (+)
G385805 NA other upstream 671970 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 1184794 27904467 ~ 27904731 (+)
G385053 NA other upstream 1382447 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 1406132 27675352 ~ 27719165 (+)
tbx5a LOC106566939 other downstream 644458 29741800 ~ 29763439 (+)
G387516 NA other downstream 799644 29896986 ~ 29898134 (+)
G388019 NA other downstream 1189609 30286951 ~ 30287824 (+)
G390184 NA other downstream 2863013 31960355 ~ 31960745 (+)
G390393 NA other downstream 3122839 32220181 ~ 32220533 (+)

Expression


Co-expression Network