LOC110523574 (LOC106566787)


Basic Information

Item Value
gene id LOC110523574
gene name LOC106566787
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29140833 ~ 29166510 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602380.2
tttttttttttacaattagaCCCAGATGTAGGGTAAACACACATATTTCCTGACTCATTAAGTGGGTAGGGTATGAATCCTTGGGCGAATAACGTCCGGCTCAATGAATAACAAAAGCACAACTCAAACTTCTACCTTCCACAAGTTCCTACCAATAAGCGCACGGCAATTCTGACGATGACCAATGGCTGTGTCCCTAGACAAATCTGCGCAGACGTTTGAAGGACTGTCCAGTTGAAAAAAAGTATCCTGGAGCTGCAAAGGAAAGCAGTGTTTCGTCAATGGAAGGCATAAAGAGAAATGGGTAGAATTTATAATTAATTttgaataaatatagtaggctagGCTACTTATTACAAACGAATAGTTGTTGTATCACGCGCAAAGTAATACGACTTTATAACCACGTTATAAGATATATCTTGGTGAGGTTTGAGTTTGCCATTATTCAGTTCAACGATTGACAAATGAATGGCTCTGATAGTGACTGATCGGAGGTGCAAATTGAACGGGTCATCGACAATTTACGGTAGGATTGGCACAAGAAGAGAAGGCAAGACAAGCAGAACCGGTAAAATGCAGCCTAAAGACACGGAATATTCAACAGATGGGTTACCCAAAGCATTTTTACACAGTTTGAGGACACTCTTTGACATCCTTGATGACGGGAAGAGAGGGTATGTGCACATATCGGAGATTGAGAGTCGATGGCAAGGGGCAGATACTCATGATTTGCCCGGCGGGGTGCTGGAGTGCCTGAGGCGGGTGGCCCCACCGCATGGTTGCCTGACATTTGAGCGCTTCGTGGCGGGGCTGCGATACTCCATGCTGAACCCGGACAACAACAACCAAATGAAGGGCCCGTCTGCCGTGCACCCGGAACACCCGCACTCTAAACAGCACCATCTGCCAGCGCAAAAACCAGCCCCGCTTTCTGCCTGCTCTGTCGGAACTCGGATTGAAAACAAAGTTATTCCACTGGATCCGAGCAACGGGACCAACAAAACGCATCACAACCGCGCGTCCTCACTTCAGAGTCGGTCCAGACATGAGGAGGGGAACACTGGATACCCAGTCACCTCTGCCGCAGGTGGCCCCGTGCGGTACACCAATGCGGGTTATGAGAGATCAGGCAGAAGTTTGGAACGGATTCCCATTGTGCTCGAAAGCGGTTCGTATCGAGAAGATTCGGTTCGAATGGTGAAGCAAGCGCATCCACAGCAGAGTCGGGTGAGGTCCATAGAGTCCCTTGCGCTCGAGTCACCAAGCCTCCAAAAACCAAGTATTGTGGAGGCTGGTTTGCCGAGGTCCCAGAGTGAATCAGCCACAGGATTCACTGCCTCCAGACGCCATGGGCGGAGCCGGGATGAGCAGAGACGCCACACCATCACCAACGGAGTGGGTTACGGAATGCTGAAGCAGATGAAGGAGTTGGAACAGGAGAAGGACTCTCTGCTGGCTGGTCTGGAGGTGGTGGAGCGGGCTAGAGAGTGGTACCAGAACCAGATCCACAatgtcacagagagacagagacacgtgGGCCAGAGCAACCACTGCACGGATTTCTTCACAGAATCCCAGAATCAAAGTCGCATGGATGTTCTGCTTCCCAAGCTGCAGGAAGCTAACCGCTGCCTTAATGACCTCATTTCCTGCTCTGGAATGcAGTCTTTCCCATTCTCTGGCACCCAGCCCACAGCAATCTCCTCCAGCTCCCAGCCTCCTGCCACTGCCCCACCACAAGCCATTCAGAGACTGAAGGACCAGAACCGCCTTCTCACCCAGGAGGTGACTGATAAGAGTGAGCGCATCACTCAGCTGGAGCAGGAGAAGTCTGCTCTGATCAAACAGCTGTTTGAGGCTCGCGCCCGGAGCACGCATGACAGCAGTACCATGGACTCCACCTTCATCTGAATACAGACACCATAATACAACTGTAGTGGTCTCCAGCTCTATCTGACCCCCCTCCACTCACAACAAGACAACTGTATCAGACTCAACTCACCACTCCTGGCATGATGAAAGCACCTTGAACTTTGACCCCCCCACTTGACCACACCCTCTGGATCTCCCCAACTGACAACTCCAATAAATGGCCTGTACACTAATCTGGGCCGACCTCTCCCAGAGGAAAGAGACTCCCAAGTCCACCGTCCTCTGATACCTCACCCACTGGGCAGAAAGCCTGGAACACCATAGTCTAACCATTCCTAACTGGGACCTACCCAGGATTCTACTCCCCCTCGAAATACTCCAAGGATCTATTGTGATCCACTAGGATCCTACCTTATTGGACCAGACTTTACCAGACTTTCCAGACTTCCCTCCCATCACAGTATAAGCTATTTGATTGGACATCATGAACTAAATCTCAAACCCCTACATGGAGCTACTGGATCCCTgacaatcaccatgacaacagcTCCTGTACAAATGCATTAGTTGGAGGGGTTCCAttggacacacaccacacaaaatgTATTTCTTTTATGAAACATTTATTCCAGATACTTTGATCTCAGTCATACTTTGGTAGATATTTCTCCCCTTGTATTCCAATATATCCACTTGTGTATCTCAAACCTAATTGAAATGGTTGGTATGATGAGAAGCTGGGCTCTCCTGACCTGGAGGAGCTTACTGGTTTCTATAGAGCTTTTCCCATCcctgggcgccgaagacgtggatgtcgattaaggcagcccccgcacctctctgattcagaggggttgggttaaatgcggaagacacatttcagttgaatacattcagttggacaactgactaggtatccccctttccctaaggATGACAACATGACTATATAGTATCTCATTTACTGATTGTCACTCTTTGTACCCTTAAGTGAGCCAAATACACATGATGTGAAGCACTAGTATATATAgtctattataaactgggtggtttaaaccctgaatgctgattggctgacagctatGGTATATCAAACCGATtatcacgggtatgacaaaacatttatttgtactgctctaattacgttgttaaccagtttataatagcaataagacaccttGGGGGTTGGTGGGGAGTTGgtggtaaatggccaatataccaaggctaagggCTATATCCAGGCACGCTTTGcgtcgtgcgtaagaacagcccttagccgtggtatattgtccatataccacacccccttgggccttattgcttaattaccCATCATCTTAAGAGTATAACAGAAGCGGAGCATGTAACTGTTGTTTTGTTTCCCTTGAAGGGAATGTATTGAGAGCACTAGAAAAGTAACACGTCCTACAAGCCAAGGAGAcctagtagaggagagggtaggagagaagtTTGCACGTAGAAGAGACTTGAAGATGAGAAGGATTGGTATTTTCTGAATGTGTTTGAGCCCTGGTCCCTGGTGGCAGAGGGACCACTGGAACGGGACAGGGTTCAGAGAAGAGTAATGTTGGATTGGCTAGTGGGAAAAAAACGAGTCCTCCTTGGTTGATAGACttcaaatgtaatgtaatgtgctGTAATGATTCATGCGAGACTGGCTTTATAGTGCCACTTCCTCGCTGCCTTCCTACAGAGGTGTCTCAGAGTCTTTGTGTCAAAAATGAGTAATGCCATGTTAGTACAGGATGAACAGAATGTGCTTTGTGAGACCTGGTTCGCTGAGAGGTTAAAACCAAGCATAGGTACTGCTGCTCTTTCAATGCTGTGCTCATAATGGTCCCACCGAACCAGAATCTAAACCAGTGGCCTCATAAACCACATAGTCAACTGGGCCCATTCAATCTTGAATCCTCTTACATTTCTAATTGACAAGATGTTTTTTAGTGGCAGTAATTGCTATTTAACGCAACTATGTAATGATTTTGCAATGCAACTCTTATTAGGTACTGTTGTGATGTCTGCATATAAATACTCTCTGCTGTGACTGACTGCCTAGCTGTCTCCCCTGTTTGATTTTATGTCTTTGGTCTTGTGATTATCTTGCTTCACATTGCATGTTAGTGAATGCCTCGCTATCCTTTCCTCTTTCTATTTAAGTATTCCCACTTAACAGTAAAATGAACTTGACCATAAGGTGCTATAATCAGGCCCCCTTTTTATTTATCGTGTCGTGTTTCACCTTGGGATCACTTTGACTTCACTCTTCTATTCCTTTGTAATTACAGGGTCAATCCAGATGGCAGTCATCAGTGGTAGAGGGTTTTGAAGATTTGATATATTGCCTCTTGTTGCACAAAGTTTACTTGATTTAGAAAGAGGTCACCTCTATTCAGGGGGGTGTTATAGGATGTTGACTGAAAAGCTGTTGGGTGCAGATGTCTCCAAGTCATGTTTTACATGGCACAGTTGGGAGCCTAGACCTTTCATATTACTCCTCAATTAATATTCCAACCTCTTCTCCAGCACGGCAAACATTTAGAAAATGAAGTAAAATTGAAAAAAGACTTACTTTGGTTAAACAAATGTTTATATGGACAGCACACTGGGAAAAAATGACACATTTGTATTAATATTTGATTGAGTTGTCAGAAAACATGAATTCAAATCGAAATCAACCAAACCTTGTTGTTGATTTTGTAGTTGGAACCTGGGTTAAATTTAGAAATCGGAAACATCTATCAAAGAGCCATGTCGATGCAATGTTTACATTATTGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTT
>XM_021602381.2
tttttttttttacaattagaCCCAGATGTAGGGTAAACACACATATTTCCTGACTCATTAAGTGGGTAGGGTATGAATCCTTGGGCGAATAACGTCCGGCTCAATGAATAACAAAAGCACAACTCAAACTTCTACCTTCCACAAGTTCCTACCAATAAGCGCACGGCAATTCTGACGATGACCAATGGCTGTGTCCCTAGACAAATCTGCGCAGACGTTTGAAGGACTGTCCAGTTGAAAAAAAGTATCCTGGAGCTGCAAAGGAAAGCAGTGTTTCGTCAATGGAAGGCATAAAGAGAAATGGGTAGAATTTATAATTAATTttgaataaatatagtaggctagGCTACTTATTACAAACGAATAGTTGTTGTATCACGCGCAAAGTAATACGACTTTATAACCACGTTATAAGATATATCTTGGTGAGGTTTGAGTTTGCCATTATTCAGTTCAACGATTGACAAATGAATGGCTCTGATAGTGACTGATCGGAGGTGCAAATTGAACGGGTCATCGACAATTTACGGTAGGATTGGCACAAGAAGAGAAGGCAAGACAAGCAGAACCGGTAAAATGCAGCCTAAAGACACGGAATATTCAACAGATGGGTTACCCAAAGCATTTTTACACAGTTTGAGGACACTCTTTGACATCCTTGATGACGGGAAGAGAGGGTATGTGCACATATCGGAGATTGAGAGTCGATGGCAAGGGGCAGATACTCATGATTTGCCCGGCGGGGTGCTGGAGTGCCTGAGGCGGGTGGCCCCACCGCATGGTTGCCTGACATTTGAGCGCTTCGTGGCGGGGCTGCGATACTCCATGCTGAACCCGGACAACAACAACCAAATGAAGGGCCCGTCTGCCGTGCACCCGGAACACCCGCACTCTAAACAGCACCATCTGCCAGCGCAAAAACCAGCCCCGCTTTCTGCCTGCTCTGTCGGAACTCGGATTGAAAACAAAGTTATTCCACTGGATCCGAGCAACGGGACCAACAAAACGCATCACAACCGCGCGTCCTCACTTCAGAGTCGGTCCAGACATGAGGAGGGGAACACTGGATACCCAGTCACCTCTGCCGCAGGTGGCCCCGTGCGGTACACCAATGCGGGTTATGAGAGATCAGGCAGAAGTTTGGAACGGATTCCCATTGTGCTCGAAAGCGGTTCGTATCGAGAAGATTCGGTTCGAATGGTGAAGCAAGCGCATCCACAGCAGAGTCGGGTGAGGTCCATAGAGTCCCTTGCGCTCGAGTCACCAAGCCTCCAAAAACCAAGTATTGTGGAGGCTGGTTTGCCGAGGTCCCAGAGTGAATCAGCCACAGGATTCACTGCCTCCAGACGCCATGGGCGGAGCCGGGATGAGCAGAGACGCCACACCATCACCAACGGAGTGGGTTACGGAATGCTGAAGCAGATGAAGGAGTTGGAACAGGAGAAGGACTCTCTGCTGGCTGGTCTGGAGGTGGTGGAGCGGGCTAGAGAGTGGTACCAGAACCAGATCCACAatgtcacagagagacagagacacgtgGGCCAGAGCAACCACTGCACGGATTTCTTCACAGAATCCCAGAATCAAAGTCGCATGGATGTTCTGCTTCCCAAGCTGCAGGAAGCTAACCGCTGCCTTAATGACCTCATTTCCTGCTCTGGAATGTCTTTCCCATTCTCTGGCACCCAGCCCACAGCAATCTCCTCCAGCTCCCAGCCTCCTGCCACTGCCCCACCACAAGCCATTCAGAGACTGAAGGACCAGAACCGCCTTCTCACCCAGGAGGTGACTGATAAGAGTGAGCGCATCACTCAGCTGGAGCAGGAGAAGTCTGCTCTGATCAAACAGCTGTTTGAGGCTCGCGCCCGGAGCACGCATGACAGCAGTACCATGGACTCCACCTTCATCTGAATACAGACACCATAATACAACTGTAGTGGTCTCCAGCTCTATCTGACCCCCCTCCACTCACAACAAGACAACTGTATCAGACTCAACTCACCACTCCTGGCATGATGAAAGCACCTTGAACTTTGACCCCCCCACTTGACCACACCCTCTGGATCTCCCCAACTGACAACTCCAATAAATGGCCTGTACACTAATCTGGGCCGACCTCTCCCAGAGGAAAGAGACTCCCAAGTCCACCGTCCTCTGATACCTCACCCACTGGGCAGAAAGCCTGGAACACCATAGTCTAACCATTCCTAACTGGGACCTACCCAGGATTCTACTCCCCCTCGAAATACTCCAAGGATCTATTGTGATCCACTAGGATCCTACCTTATTGGACCAGACTTTACCAGACTTTCCAGACTTCCCTCCCATCACAGTATAAGCTATTTGATTGGACATCATGAACTAAATCTCAAACCCCTACATGGAGCTACTGGATCCCTgacaatcaccatgacaacagcTCCTGTACAAATGCATTAGTTGGAGGGGTTCCAttggacacacaccacacaaaatgTATTTCTTTTATGAAACATTTATTCCAGATACTTTGATCTCAGTCATACTTTGGTAGATATTTCTCCCCTTGTATTCCAATATATCCACTTGTGTATCTCAAACCTAATTGAAATGGTTGGTATGATGAGAAGCTGGGCTCTCCTGACCTGGAGGAGCTTACTGGTTTCTATAGAGCTTTTCCCATCcctgggcgccgaagacgtggatgtcgattaaggcagcccccgcacctctctgattcagaggggttgggttaaatgcggaagacacatttcagttgaatacattcagttggacaactgactaggtatccccctttccctaaggATGACAACATGACTATATAGTATCTCATTTACTGATTGTCACTCTTTGTACCCTTAAGTGAGCCAAATACACATGATGTGAAGCACTAGTATATATAgtctattataaactgggtggtttaaaccctgaatgctgattggctgacagctatGGTATATCAAACCGATtatcacgggtatgacaaaacatttatttgtactgctctaattacgttgttaaccagtttataatagcaataagacaccttGGGGGTTGGTGGGGAGTTGgtggtaaatggccaatataccaaggctaagggCTATATCCAGGCACGCTTTGcgtcgtgcgtaagaacagcccttagccgtggtatattgtccatataccacacccccttgggccttattgcttaattaccCATCATCTTAAGAGTATAACAGAAGCGGAGCATGTAACTGTTGTTTTGTTTCCCTTGAAGGGAATGTATTGAGAGCACTAGAAAAGTAACACGTCCTACAAGCCAAGGAGAcctagtagaggagagggtaggagagaagtTTGCACGTAGAAGAGACTTGAAGATGAGAAGGATTGGTATTTTCTGAATGTGTTTGAGCCCTGGTCCCTGGTGGCAGAGGGACCACTGGAACGGGACAGGGTTCAGAGAAGAGTAATGTTGGATTGGCTAGTGGGAAAAAAACGAGTCCTCCTTGGTTGATAGACttcaaatgtaatgtaatgtgctGTAATGATTCATGCGAGACTGGCTTTATAGTGCCACTTCCTCGCTGCCTTCCTACAGAGGTGTCTCAGAGTCTTTGTGTCAAAAATGAGTAATGCCATGTTAGTACAGGATGAACAGAATGTGCTTTGTGAGACCTGGTTCGCTGAGAGGTTAAAACCAAGCATAGGTACTGCTGCTCTTTCAATGCTGTGCTCATAATGGTCCCACCGAACCAGAATCTAAACCAGTGGCCTCATAAACCACATAGTCAACTGGGCCCATTCAATCTTGAATCCTCTTACATTTCTAATTGACAAGATGTTTTTTAGTGGCAGTAATTGCTATTTAACGCAACTATGTAATGATTTTGCAATGCAACTCTTATTAGGTACTGTTGTGATGTCTGCATATAAATACTCTCTGCTGTGACTGACTGCCTAGCTGTCTCCCCTGTTTGATTTTATGTCTTTGGTCTTGTGATTATCTTGCTTCACATTGCATGTTAGTGAATGCCTCGCTATCCTTTCCTCTTTCTATTTAAGTATTCCCACTTAACAGTAAAATGAACTTGACCATAAGGTGCTATAATCAGGCCCCCTTTTTATTTATCGTGTCGTGTTTCACCTTGGGATCACTTTGACTTCACTCTTCTATTCCTTTGTAATTACAGGGTCAATCCAGATGGCAGTCATCAGTGGTAGAGGGTTTTGAAGATTTGATATATTGCCTCTTGTTGCACAAAGTTTACTTGATTTAGAAAGAGGTCACCTCTATTCAGGGGGGTGTTATAGGATGTTGACTGAAAAGCTGTTGGGTGCAGATGTCTCCAAGTCATGTTTTACATGGCACAGTTGGGAGCCTAGACCTTTCATATTACTCCTCAATTAATATTCCAACCTCTTCTCCAGCACGGCAAACATTTAGAAAATGAAGTAAAATTGAAAAAAGACTTACTTTGGTTAAACAAATGTTTATATGGACAGCACACTGGGAAAAAATGACACATTTGTATTAATATTTGATTGAGTTGTCAGAAAACATGAATTCAAATCGAAATCAACCAAACCTTGTTGTTGATTTTGTAGTTGGAACCTGGGTTAAATTTAGAAATCGGAAACATCTATCAAAGAGCCATGTCGATGCAATGTTTACATTATTGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTTACATTATGGGAACAACGTAGTCTCAAACAATGTTT

Function

NR:

description
suppressor APC domain-containing protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602380.2 False 4871 mRNA 0.45 6 29140833 29166510
XM_021602381.2 True 4868 mRNA 0.45 6 29140833 29166510

Neighbor

gene id symbol gene type direction distance location
tmem141 tmem141 coding upstream 5350 29133844 ~ 29135483 (+)
LOC110523572 zmynd19 coding upstream 19606 29116491 ~ 29121227 (+)
coq4 coq4 coding upstream 43491 29089525 ~ 29097342 (+)
LOC110522906 LOC106563306 coding upstream 73710 29061275 ~ 29067123 (+)
alad hem2 coding upstream 84891 29045103 ~ 29055942 (+)
LOC110523576 LOC106563296 coding downstream 7809 29174319 ~ 29187968 (+)
LOC110523578 LOC106566868 coding downstream 88128 29254638 ~ 29262641 (+)
mtfp1 LOC106566934 coding downstream 137827 29304337 ~ 29312328 (+)
LOC110523581 LOC106566935 coding downstream 174768 29341278 ~ 29446180 (+)
LOC110523583 LOC106566936 coding downstream 546418 29712928 ~ 30103090 (+)
G386606 NA non-coding upstream 67670 29070812 ~ 29073163 (+)
G386568 LOC106566731 non-coding upstream 145710 28994145 ~ 28995123 (+)
G386537 NA non-coding upstream 175185 28961817 ~ 28965648 (+)
spag8 LOC106566715 non-coding upstream 209902 28926263 ~ 28931410 (+)
G386445 NA non-coding upstream 287682 28852880 ~ 28853151 (+)
G386814 NA non-coding downstream 30377 29196887 ~ 29197098 (+)
G386815 NA non-coding downstream 30621 29197131 ~ 29197363 (+)
G386846 NA non-coding downstream 110291 29276801 ~ 29277657 (+)
G386918 NA non-coding downstream 128668 29295178 ~ 29295389 (+)
G385805 NA other upstream 723278 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 1236102 27904467 ~ 27904731 (+)
G385053 NA other upstream 1433755 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 1457440 27675352 ~ 27719165 (+)
tbx5a LOC106566939 other downstream 575290 29741800 ~ 29763439 (+)
G387516 NA other downstream 730476 29896986 ~ 29898134 (+)
G388019 NA other downstream 1120441 30286951 ~ 30287824 (+)
G390184 NA other downstream 2793845 31960355 ~ 31960745 (+)
G390393 NA other downstream 3053671 32220181 ~ 32220533 (+)

Expression


Co-expression Network