tbx5a (LOC106566939)


Basic Information

Item Value
gene id tbx5a
gene name LOC106566939
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29741800 ~ 29763439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602422.2
TGGGCCATTGgtgcgtagagagagagagagtgagaggagggaggggagaaggtggTGACGGATCTGCTCCTCTGTAAACTTGCTATACTGCTATGTGCTATCAGCAGGGAAGGCTTCCCGAACAACGGTCATCGACTCTAAAATGTACAATAAAGTAACACCGCGTGGTTATTTTAGCCATCTTTGCTAGACTCCTGAATCTTCCTTCACCTGTGCGTTTTCGCTTGGTCACCGTACATTTGGACTTGCACTGAAGATAGAGAAAATCCATGGGGATATTAGATAGCCTTTTCGGGCTACACATTGGGATTATACATTGAATTGGGTGGACATTTTTCGCAAACACTTTGCATTTTTGAAGAAACGACCTCTGCTGTGCCATATCTTCACGACATTGAAAGTGACGTATCTGGTTACAAGTTGGGGCCTTGGTCTCCGGAGCTCCAGACATGGCAGACCAGAAGGAAACATTTGGACTGCAAAATTCGCCCAGCGGGTCAGAGTCAAAGGAGTTACACACTGAGAGTAAAGCAGAGAAACAAAATGGAACTTCGAGCAAATCTCCATCCTCCCAGACGACATATATTCAACAGGGAATGGAGGGGATAAAAGTGTACCTGCATGAGAGGGAATTGTGGGCGAAGTTTCATGAGGTGGGGACGGAGATGATCATCACCAAAGCGGGAAGGCGAATGTTTCCCAGCTTCAAAGTGAAGGTCACTGGATTGAACCCTAAAACGAAATACATACTCCTGATGGATGTCGTGCCTGCGGACGACCATCGCTACAAATTCGCCGATAATAAATGGTCCGTGACCGGGAAGGCCGAACCTGCCATGCCCGGGAGGCTCTACGTTCACCCGGACTCTCCTGCGACGGGGGCGCATTGGATGAGGCAACTTGTCTCTTTCCAGAAGCTGAAACTGACGAATAACCACCTGGATCCTTTTGGACACATTATCCTCAACTCCATGCATAAATACCAACCCAGGATTCACATCGTGAAAGCGGATGAAAATAATGGCTTTGGCTCCAAAAACACGGCGTTCTGTACCCACGTATTCCCCGAGACTGCCTTCATTGCGGTAACATCTTACCAGAATCATAAGATAACCCAACTTAAGATAGAGAACAACCCGTTTGCCAAAGGCTTTCGTGGGAGTGATGACATGGAGCTCCACCGGATGTCCAGAATGCAAAGcacTAAGGAATACCCAGTGGTCCCTCGCAGTACGGTGCGCCAGAGGGTGGGCACCAGCCAGAGCCCATTCAGTGGGGAGGTGCAGGTTATGGTCACTCCCAGTGGCCTGGCCTCCCAGTACACCCAGTGTGAGAATGGGGTCACCAGCACCTCACAGGACCTCCTGCCCCAGTCTGGCTGTTACCCCCTCCCCCACGAGCACAGCCAGGACTACCATTGCATCAAGAGGAAAGtggaTGATGACTGTCACTCAGGGGAGCACACCTACAAGAAGGCTTACCTGGAGAGCTCCTCCAGCGAGGACGACCATTACTACCGTCCCGTCAGCTACCCACAGAGCCTGGGCCTGCCCGGGGGGCCCTACAGGACCGAGTCTGGCCAGAGGCAGGCCTGTATGTACGCCAGCGCCTCCCAAGGGGCTGAGCCCGTCCCCAGCCTGGAGGACATCAGCTGCAACACCTGGGCCAGTGTTTCGCCCTATGGCAGCTGCTCCGTCACCTCCATGCAGCCAATGGAGCGGCTGCCCTACCAGCACTTCTCCGCCCACTTTACCTCGGGGCCCCTGGTGTCCAGACTGAGCGGGGTGGCAAGCCACGCCTCCACGCAGCTGGGCGAAGCCCACCACGCCATGTACCAGGGCCCCATGGCCCACCAGACACTGGGCCGCCAGTGTAGCCCTGGGGCAGGCATCCAGTCGCCCACCGCAGGTCTCCAAGGCAACGAGTACCTGTACTCGCATGGGATCCCGCGCACGCTGTCGCCTCATCAGTACCACACAGTGCACAGCGTCAGCATCATGCCAGAGTGGAATGAGAGCAGCTAAAATAACTTTCTTCATAGGAAAGGATGGAGAAGTTGGATAAAAAAAAGGCCCTTGATAAGGTTGGGCTTTAGATAaatctatatttatatttttgaagcAGTACAGTACGGCAGTGCAGTCTCATGAGATTAATGAGGCATGACCGCCTAGAGCATTGGACTTTGGTGCTCAGAGGAACTGCGTGACTGTCTTTGCAGTTGACTTCTTACTGTGCCTAAAGGCAAACATCATGAGGATGGGCAAAACAAGGTGGAGAAAAGCATTGGTCATGAAGGAGACTTATAAGGAAACTAAACAAGTTTAAAAACCCAATGCTTTTGCATGAGTAACAGAAGCACAGAAGTGGCTTCATCGGGAGACCCCTATTTTAAAACTGTTCTGTTTTGATAGTGTATTTTACATCTTGGTGTTGCAttatcaatgttttttttctgctgCCAATAGAAAGCTCTTTTACCTTTATCCTGTAGATTTGTAAATTTAACATTTTGTGAAAAAAAATACCTCCCAGTtttcattttatttgttttttttgttgtgaaCTGCTTACCttctatattgaacaaaaataaacgcaacatgcaacaatttcaactaaTATACTGAGTTAcaagttca
>TU439971
CCCAAACTAGCCTACGCTGCTCGTCACAGACTCAGCGCTTCCGCGTCATAACGCGTACTACTGTGGGCCATTGgtgcgtagagagagagagagtgagaggagggaggggagaaggtggTGACGGATCTGCTCCTCTGTAAACTTGCTATACTGCTATGTGCTATCAGCAGGGAAGGCTTCCCGAACAACGGTCATCGACTCTAAAATGTACAATAAAGTAACACCGCGTGGTTATTTTAGCCATCTTTGCTAGACTCCTGAATCTTCCTTCACCTGTGCGTTTTCGCTTGGTCACCGTACATTTGGACTTGCACTGAAGATAGAGAAAATCCATGGGGATATTAGATAGCCTTTTCGGGCTACACATTGGGATTATACATTGAATTGGGTGGACATTTTTCGCAAACACTTTGCATTTTTGAAGAAACGACCTCTGCTGTGCCATATCTTCACGACATTGAAAGTGACGTATCTGGTTACAAGTTGGGGCCTTGGTCTCCGGAGCTCCAGACATGGCAGACCAGAAGGAAACATTTGGACTGCAAAATTCGCCCAGCGGGTCAGAGTCAAAGGAGTTACACACTGAGAGTAAAGCAGAGAAACAAAATGGAACTTCGAGCAAATCTCCATCCTCCCAGACGACATATATTCAACAGGGAATGGAGGGGATAAAAGTGTACCTGCATGAGAGGGAATTGTGGGCGAAGTTTCATGAGGTGGGGACGGAGATGATCATCACCAAAGCGGGAAGGCGAATGTTTCCCAGCTTCAAAGTGAAGGTCACTGGATTGAACCCTAAAACGAAATACATACTCCTGATGGATGTCGTGCCTGCGGACGACCATCGCTACAAATTCGCCGATAATAAATGGTGTGTAAGACTTTAACAAATAAAGTTCCTCTGGGATCGCATCAGAGCTAATGTCCACAGCCTTATGACAATAAGTAGCCTACCTGTATACAAGATATGAACATGTCATATGTAGCCTATTTTTGACCCAGGATGTTTCACCTTGTAATGAGGTGTTTTCTGTTTGCAGAGTGCAACACCCCTACTGAGTTTTAATAACTTTACAATGCATTTCTGGAGCATATGGGTCTATAGCTATCAGGCTATTGCATATAGATAGAAGGAAACTGTAGTCAATGTGCAATAAAGTAGCCTAATATTAGGTCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602422.2 False 2642 mRNA 0.50 9 29741863 29763439
TU439971 True 1177 TUCP 0.45 4 29741800 29746194

Neighbor

gene id symbol gene type direction distance location
LOC110523583 LOC106566936 coding upstream 19175 29712928 ~ 30103090 (+)
LOC110523581 LOC106566935 coding upstream 295683 29341278 ~ 29446180 (+)
mtfp1 LOC106566934 coding upstream 429535 29304337 ~ 29312328 (+)
LOC110523578 LOC106566868 coding upstream 479222 29254638 ~ 29262641 (+)
LOC110523576 LOC106563296 coding upstream 553895 29174319 ~ 29187968 (+)
LOC110523590 rab14 coding downstream 96170 29859609 ~ 29902923 (+)
LOC110524747 LOC106567126 coding downstream 341854 30105293 ~ 30112442 (+)
LOC110524742 LOC106567059 coding downstream 370233 30133672 ~ 30217715 (+)
LOC110523600 LOC106567149 coding downstream 492934 30256373 ~ 30260305 (+)
rgs3a LOC106565973 coding downstream 576367 30339806 ~ 30495960 (+)
G387406 NA non-coding upstream 29900 29711764 ~ 29711963 (+)
G387405 NA non-coding upstream 30154 29711303 ~ 29711709 (+)
G387401 NA non-coding upstream 35740 29705884 ~ 29706123 (+)
G387399 NA non-coding upstream 37910 29703734 ~ 29703953 (+)
G387395 NA non-coding upstream 46170 29695449 ~ 29695693 (+)
G387484 NA non-coding downstream 67409 29830848 ~ 29831142 (+)
G387570 NA non-coding downstream 211940 29975379 ~ 29976702 (+)
G387556 LOC106566971 non-coding downstream 233039 29996478 ~ 30003512 (+)
G387597 NA non-coding downstream 269262 30032701 ~ 30077928 (+)
spag8 LOC106566715 other upstream 810932 28926263 ~ 28931410 (+)
G385805 NA other upstream 1324308 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 1837132 27904467 ~ 27904731 (+)
G385053 NA other upstream 2034785 27706714 ~ 27707078 (+)
LOC110522888 LOC106566402 other upstream 2058470 27675352 ~ 27719165 (+)
G387516 NA other downstream 133547 29896986 ~ 29898134 (+)
G388019 NA other downstream 523512 30286951 ~ 30287824 (+)
G390184 NA other downstream 2196916 31960355 ~ 31960745 (+)
G390393 NA other downstream 2456742 32220181 ~ 32220533 (+)
G391513 LOC100136561 other downstream 3395387 33158826 ~ 33162980 (+)

Expression


Co-expression Network