Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110523590 |
| gene name | rab14 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 29859609 ~ 29902923 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rab14 | Predicted to enable GTPase activity. Predicted to be involved in Golgi to endosome transport; intracellular protein transport; and phagolysosome assembly involved in apoptotic cell clearance. Predicted to act upstream of or within defense response to bacterium; endocytic recycling; and phagosome maturation. Predicted to be located in Golgi apparatus and endosome. Predicted to be active in early endosome and phagocytic vesicle. Is expressed in several structures, including axis; nervous system; neural tube; notochord; and trigeminal placode. Orthologous to human RAB14 (RAB14, member RAS oncogene family). |
| description |
|---|
| ras-related protein Rab-14 |
| id | name | namespace |
|---|---|---|
| GO:0006895 | Golgi to endosome transport | biological_process |
| GO:0032880 | regulation of protein localization | biological_process |
| GO:0007264 | small GTPase mediated signal transduction | biological_process |
| GO:0045176 | apical protein localization | biological_process |
| GO:0007589 | body fluid secretion | biological_process |
| GO:0008543 | fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0006184 | obsolete GTP catabolic process | biological_process |
| GO:0032456 | endocytic recycling | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0030670 | phagocytic vesicle membrane | cellular_component |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0005765 | lysosomal membrane | cellular_component |
| GO:0005770 | late endosome | cellular_component |
| GO:0030140 | trans-Golgi network transport vesicle | cellular_component |
| GO:0005791 | rough endoplasmic reticulum | cellular_component |
| GO:0005795 | Golgi stack | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0042175 | nuclear outer membrane-endoplasmic reticulum membrane network | cellular_component |
| GO:0055037 | recycling endosome | cellular_component |
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0031901 | early endosome membrane | cellular_component |
| GO:0097208 | alveolar lamellar body | cellular_component |
| GO:0016324 | apical plasma membrane | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0019003 | GDP binding | molecular_function |
| id | description |
|---|---|
| K07881 | RAB14; Ras-related protein Rab-14 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036977244.1 | True | 3518 | mRNA | 0.46 | 8 | 29859609 | 29902923 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tbx5a | LOC106566939 | coding | upstream | 96170 | 29741800 ~ 29763439 (+) |
| LOC110523583 | LOC106566936 | coding | upstream | 136921 | 29712928 ~ 30103090 (+) |
| LOC110523581 | LOC106566935 | coding | upstream | 413429 | 29341278 ~ 29446180 (+) |
| mtfp1 | LOC106566934 | coding | upstream | 547281 | 29304337 ~ 29312328 (+) |
| LOC110523578 | LOC106566868 | coding | upstream | 596968 | 29254638 ~ 29262641 (+) |
| LOC110524747 | LOC106567126 | coding | downstream | 202370 | 30105293 ~ 30112442 (+) |
| LOC110524742 | LOC106567059 | coding | downstream | 230749 | 30133672 ~ 30217715 (+) |
| LOC110523600 | LOC106567149 | coding | downstream | 353450 | 30256373 ~ 30260305 (+) |
| rgs3a | LOC106565973 | coding | downstream | 436883 | 30339806 ~ 30495960 (+) |
| LOC110523597 | LOC106565929 | coding | downstream | 772013 | 30674936 ~ 30711660 (+) |
| G387484 | NA | non-coding | upstream | 28467 | 29830848 ~ 29831142 (+) |
| G387406 | NA | non-coding | upstream | 147646 | 29711764 ~ 29711963 (+) |
| G387405 | NA | non-coding | upstream | 147900 | 29711303 ~ 29711709 (+) |
| G387401 | NA | non-coding | upstream | 153486 | 29705884 ~ 29706123 (+) |
| G387399 | NA | non-coding | upstream | 155656 | 29703734 ~ 29703953 (+) |
| G387570 | NA | non-coding | downstream | 72456 | 29975379 ~ 29976702 (+) |
| G387556 | LOC106566971 | non-coding | downstream | 93555 | 29996478 ~ 30003512 (+) |
| G387597 | NA | non-coding | downstream | 129778 | 30032701 ~ 30077928 (+) |
| G387655 | NA | non-coding | downstream | 210816 | 30113739 ~ 30184969 (+) |
| spag8 | LOC106566715 | other | upstream | 928678 | 28926263 ~ 28931410 (+) |
| G385805 | NA | other | upstream | 1442054 | 28416605 ~ 28417555 (+) |
| G385171 | LOC106566130 | other | upstream | 1954878 | 27904467 ~ 27904731 (+) |
| G385053 | NA | other | upstream | 2152531 | 27706714 ~ 27707078 (+) |
| G388019 | NA | other | downstream | 384028 | 30286951 ~ 30287824 (+) |
| G390184 | NA | other | downstream | 2057432 | 31960355 ~ 31960745 (+) |
| G390393 | NA | other | downstream | 2317258 | 32220181 ~ 32220533 (+) |
| G391513 | LOC100136561 | other | downstream | 3255903 | 33158826 ~ 33162980 (+) |
| G391805 | NA | other | downstream | 3458034 | 33360957 ~ 33361341 (+) |
