LOC110523600 (LOC106567149)


Basic Information

Item Value
gene id LOC110523600
gene name LOC106567149
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30256373 ~ 30260305 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602455.2
CGATGGGTAAGAAGTGACAGTTTATAAACCGAGAGCACCTTTTATTGAACGTAATTTTACCGACTCACAATCTAGACATATTTAAAGAACGTAATCTGTAAAGCAAATACCTTCAATTGAGATAATCCCCCAAATAAGACGCCATCGAGTTTCTTTGTAAAGAACTTCAAAGAGTTGCTTGAACACGCAGAATAGAGATGAGGCTTCTGTGTGTAGTTCTGCTGGTCACCTGCAGCGTGTTTGCCGATGATGACGACAAGAGGGAAAGCGTTGGGACCGTGATTGGAATCGACTTGGGGACCACCTATTCCTGTGTTGGAGTGTTCAAGAATGGCCGTGTTGAGATCATTGCAAACGACCAGGGAAACCGCATCACCCCATCGTATGTGGCCTTCACCGCTGAGGGGGAGCGTCTGATCGGTGACGCAGCCAAGAACCAGCTCACCTCCAACCCCGAGAACACAGTCTTTGACGCAAAGAGACTGATTGGCCGCGCCTGGACCGATTCCGCTGTGCAGCATGACATCAAGTACTTCCCCTTCAAGGTTATCGAGAAGAAGAGCAAGCCCCATATTCAGGTGGACATTGGTGGTGGTCAGCTGAAGACCTTTGCTCCAGAGGAGATCTCTGCAATGGTTCTCACCAAGATGAAGGAAACTGCTGAGGCTTACCTGGGAAAGAAGGTCAcacatgctgtggtcactgtaCCCGCCTACTTCAATGATGCCCAGCGTCAGGCCACCAAGGATGCTGGACTCATCGCTGGCCTAAAAGTCATGAGGATCATCAACGAGCCAACCGCAGCAGCTATTGCCTATGGCCTGGACAAGAAGGACGGTGAGAAGAACATCCTGGTGTTCGACCTGGGAGGTGGTACCTTTGACGTGTCTCTCCTGACCATCGATAACGGTGTGTTTGAGGTGGTGGCCACCAATGGCGACACCCACCTGGGAGGAGAGGACTTTGACCAGCGTGTCATGGAGCACTTCATCAAGCTGTACAAGAAGAAGACCGGCAAGGACGTGCGCATGGATAACCGTGCTGTGCAGAAGCTGCGTCGTGAGGTGGAGAAGGCCAAGAGAGGCCTGTCTGCCCAGCACCAGGCCCGCATTGAGATCGAGTCCTTCTTCGATGGAGAGGACTTCTCAGAGACCCTGACCCGTGCTAAGTTTGAGGAGCTCAACATGGACCTGTTCCGTTCCACCATGAAGCCTGTGCAGAAGGTGATGGAGGACTCTGACCTGAAGAAGACCGACATTGACGAGATTGTCCTGGTGGGCGGCTCCACTCGTATCCCCAAGGTCCAGCAGCTGGTGAAGGAGTTTTTCAATGGCAAGGAGCCCTCCAGGGGCATCAACCCTGACGAGGCTGTGGCCTACGGCTCTGCCGTGCAGGCTGGAGTGCTGTCTGGAGAGGAGGACACAAATGACATTGTTCTTCTGGATGTGTGCCCCCTGACCCTGGGTATTGAGACTGTGGGAGGAGTCATGACCAAGCTGATCCCCAGAAACACTGTGGTGCCAACCAAGAAGTCCCAGATCTTCTCCACTGCCTCTGACAACCAGCCCACCGTTACCATCAAAGTTCACGAGGGTGAACGTCCCCTGACCAAAGACAACCACCTGCTGGGTACCTTCGACCTGACTGGTATCCCCCCCGCACCCCGGGGTGTGCCCCAGATCGAGGTCACCTTCGAGATTGACGTCAATGGCATCTTGCGCGTCACAGCCGAGGACAAGGGAACGGGCAACAAGAACAAAATCACCATCACCAACGACCAGAATCGTCTGACGCCTGAGGACATTGAGCGGATGGTCAATGATGCAGAGCGCTTTGCCGATGAGGACAAGAAGTTGAAGGAGCGCATTGATGCCCGCAATGAGCTTGAAAGCTACGCCTACTCGCTCAAGAATCAGATCGGTGACAAGGAGAAGCTGGGTGGCAAGCTCTCTCCCGAGGACAAGGAAGCCATAGAGAAAGCAGTAGAGGAGAAGATTGAGTGGATGGAGTCTCACCAAGATGCTGAGTTGGAGGACTTCCAGGCCAAGAAGAAGGAGCTGGAAGAGGTGGCGCAGCCCATCATCAGCAAGCTTTACGGAAGTGCAGGCGGTCCCCCTACTGAGGCAGAGGGAGATCAGGATCAAAAGGACGAGTTGTAAGGCTGTCTTGAGGGTCTCCACAGCCTACATGAGCAACTCTCTGCTTTCTGTTCTATTGCCCCCTCGCCTCTCTGGTAGTGGCACAGATGTACATATTGGACTTAAATGGTGAGAGGAAATGCAACCATGATGAATCTGCTGGAAAGACTTCTGAAATATTGTTTAGAAGTGAGATGTTCACTTCGCTGTGTGGCGGAGGTATAGTCAGCCTGGATTCGAGGCTCGCTGCTGTTCTCAGGCAGTTTGAAAATGGGTTCTCCAGGGGAAGGGGTTGGGCGGTTCTGGGTGACAGGGTAACTGACATGTTCCCAAGCAATGTTAACAAGTTATTTATTGAATCTGGTCATTGTAGAAAAGGCTTTCTACTGTTAAGACattgaaataataaatgtttgaTACAAATG

Function

NR:

description
78 kDa glucose-regulated protein-like

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K09490 HSPA5, BIP; endoplasmic reticulum chaperone BiP

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602455.2 True 2563 mRNA 0.52 8 30256373 30260305

Neighbor

gene id symbol gene type direction distance location
LOC110524742 LOC106567059 coding upstream 38658 30133672 ~ 30217715 (+)
LOC110524747 LOC106567126 coding upstream 147824 30105293 ~ 30112442 (+)
LOC110523590 rab14 coding upstream 353450 29859609 ~ 29902923 (+)
tbx5a LOC106566939 coding upstream 492934 29741800 ~ 29763439 (+)
LOC110523583 LOC106566936 coding upstream 533685 29712928 ~ 30103090 (+)
rgs3a LOC106565973 coding downstream 79501 30339806 ~ 30495960 (+)
LOC110523597 LOC106565929 coding downstream 414631 30674936 ~ 30711660 (+)
LOC110522910 LOC106565903 coding downstream 481549 30741854 ~ 30856071 (+)
LOC110522913 LOC106565915 coding downstream 705834 30966139 ~ 30975087 (+)
LOC110523608 NA coding downstream 1892603 32152908 ~ 32160417 (+)
G387655 NA non-coding upstream 71404 30113739 ~ 30184969 (+)
G387678 NA non-coding upstream 86414 30169350 ~ 30169959 (+)
G387657 LOC106567126 non-coding upstream 132878 30122695 ~ 30123495 (+)
G387597 NA non-coding upstream 178445 30032701 ~ 30077928 (+)
G387711 NA non-coding downstream 607 30260912 ~ 30261118 (+)
G387712 NA non-coding downstream 832 30261137 ~ 30261674 (+)
G388013 NA non-coding downstream 23522 30283827 ~ 30284092 (+)
G388017 NA non-coding downstream 25280 30285585 ~ 30285784 (+)
G387516 NA other upstream 358239 29896986 ~ 29898134 (+)
spag8 LOC106566715 other upstream 1325442 28926263 ~ 28931410 (+)
G385805 NA other upstream 1838818 28416605 ~ 28417555 (+)
G385171 LOC106566130 other upstream 2351642 27904467 ~ 27904731 (+)
G388019 NA other downstream 26646 30286951 ~ 30287824 (+)
G390184 NA other downstream 1700050 31960355 ~ 31960745 (+)
G390393 NA other downstream 1959876 32220181 ~ 32220533 (+)
G391513 LOC100136561 other downstream 2898521 33158826 ~ 33162980 (+)
G391805 NA other downstream 3100652 33360957 ~ 33361341 (+)

Expression


Co-expression Network