LOC110522913 (LOC106565915)


Basic Information

Item Value
gene id LOC110522913
gene name LOC106565915
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30966139 ~ 30975087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977274.1
CAGCTGCAGTTGCAAGAACCAATGAAAATAGAGGtgggtgggaaataagtatttgctaGCGTTACGTCAACATCGCAGTCTCGCAGCAGCAGACCTACCATCTCCTGTACCTTGACAGATCTGACATTGCAAGGTGTGAACACGACAGCGGCAGCTTCACCAGCTCTGGACCCGGACCTGCTCCGGAGTGGACCCGGACCTACTCTGGAGTGCCCCATCTGCCTGGAGAATTACAACCAGGAGCAGCTGAGGCCCAATCTCCTGCAGTGTGGCCACAGTGTGCAGACAGTGTCTGGAGAAGCTGCTGGATAGCACCATCAACGGCGTGCGCTGTCCCTTCTGCAGCAGGGTCTCCCGCATGAGCAGCTTCTCCCAGCTGGCTGACAACCTCACTGTGCTCAAGATCCTCGACTGGATCAGCTCCTGCACCACCGCCCTCATGTGCAAGTCCTGCCGCAACCGCCTACCCCGACAGTACTGCCTTGACTGCGGCACCGTGCTCTGTGACCTCTACAAGAGTGAGGGCCACCTGCAGCAGGGCCACGCCGTCCAGCCCATCCGGGTGGCTGCTGAGCAGTGCCGGAAGGACCTGGGCGGTAAACTGGCGTCCCTCCACAAAGCCATGGACCACATCCAGCAGAAAAAAAGTGATCATTGACAGTGTGACAAAGAACATGCGGGTGAAGTCCCGGGCGGTTCAGCAGGAGTATGCCCGGCCTGAGCTGCGTCTGCTGGAGGAGCTGGGGCACCAGCGGCAGGCCTTCGCTGCCTCCATGGCCAAGGTGGAAAAGCTGAATGGGCACATCCTTGAGGAGCAGACATACCTGCTGAAACTGGCCGAAGTGCAGGTGGTGTCCCGATGCGACTACCTCACCATGTGGGTGAAGCAGAGCGACATCACCCTGCTGGAGGGGGAAACGATGAGGAGGAGCTAGACCTGAGGAGCAGCCTGGACCTGCCTACGCTACTCAAGCTCCAGGACCCTGAGCTGGTGACGACAGAGCATCGCGTCAGCATCagctcatcaccaagccctgCACACTGATGAGGCTGCTGGAGTTTAGCGCTGGGGTTGGGGTTGATGCCATGTGCGGGACCATGGGGGTTGTAGGGGCCCCGCTGGACCTTTATAGAGACATTGATATGTTAATGTCTGTAGAAGAGGCTGTGTGTGCCTCCCTGGATAACTTTAAGTCCATGGATGAAGGGGGGGCCCCCAGCTCGGGGCCACAGCACTGCCAGTTCGTAAAGAAGATGGGTTGCAAGGGCAACCTGCCGGGGATGTTCAACCTACCGTTTAGCATCTGTGTCACCCCACAGGGCGAAGTCCTAGTGGCCGACCGGGGGAACTACCGCATCCAGATCTTCAACCGCAAGGGCTTCCAGAGGGAGATCCATCGCAACCCCAGCAGCATCGACCTGCCCAACCTCATCCCGCTGTCCATCACCATCACTCCGCAGGGCCTTATTGGGGTCACTGACAACTCAGTCAAGGTGTACACCATTGACGGCCACTGCGTGGCCTGCCACAAGAACCAGCTAATAAAGCCCTGGGGCATTGCAGCCATGCCCAAGGGTCAGTTTGTGGTCTTGGACGTGGAGGGAGGCAAGCTCCGGTGCCTGGCCGTGGACCGCAAAGTGGGCGTAGTCAACTACAACCGTCTGTGCTCGGCAGTGCGGCCCAAGTTTGTGACGTGCGACGCATCGGGCACCATCTACTTCACCCAAGGATTGGGCCTGAACATTGAGAACCGCCATAATGAGCACCACCTGGAGGGGGGCTTCTCCATCTGCTCGGTGGGGACGGACGACCAGCTGGGCAAGCATCTCAGCCACTTCTTCTCGGAGACAGAGGACTTCCGTTGCATCACGGGAATGTGCGTGGATGCCAACGGGGACCTGCTGGTGACGGACAATGGCAGGAAGAAGATCCTGCAATTCCCCAAAGAGGGCGGCTTTAACGTGCTCATCCAGGAGGGACTGGCGTGCCCTGTGGGCGTGGCCGTCACTGAGAAAGGACAGCTGATGGTGCTGGACTGCTGGGACCACTGTGTGAAAGTCTACTCGTACCCACAGAGGAGATGCTTCTCCACCTGCTAGGTGCTAAGAAACTACAAATccaattttgtgtgtgtgtgtcacttttTAATATAAATGGCTGCATTCCAAACAACTTTTGCTCGTCCATGATCTGATTTCTAGTCAGTGCTTAACAGGTCATATAATGAGTTACTGAtccccagtcagtcagtgggaCTGGCTAGGAGCACACTGGAACCAAGCTGGTGTTTATCTACAATTTGAGCTGCCTCGTTGATTTGATGGATCACAGCACTAAAGATGACAATAAGTGTTGTCACATTGAGGGTGGGGGGAAACTGGTATGTCAATCAACGCACAACATTTGTAATATTTTAACTGCTGtactgtacaaaatattagggCCGGGTTGATACCTGTATTGCGATACTCATTAGTATCGTAGCAAAGACACAAAACACGAAGTAaatttaactt
>TU441408
CAGCTAATAAAGCCCTGGGGCATTGCAGCCATGCCCAAGGGTCAGTTTGTGGTCTTGGACGTGGAGGGAGGCAAGCTCCGATGCTTCTCCACCTGCTAGGTGCTAAGAAACTACAAATccaattttgtgtgtgtgtgtcacttttTAATATAAATGGCTGCATTCCAAACAACTTTTGCTCGTCCATGATCTGATTTCTAGTCAGTGCTTAACAGGTCATATAATGAGTTACTGAtccccagtcagtcagtgggaCTGGCTAGGAGCACACTGGAACCAAGCTGGTGTTTATCTACAATTTGAGCTGCCTCGTTGATTTGATGGATCACAGCACTAAAGATGACAATAAGTGTTGTCACATTGAGGGTGGGGGGAAACTGATGCAGAAAATGTCACTGTAAAAGTTTTAAACATTCTGCCAACACCTCCAGAGACATTTGATCAAGTTCGTCATTGCTATTTCCTTTAGAAACTTCCATACGTACATACAATTTCTTCAGTGATTGTGTGTTTTCATTTCTTGTACTCTCATGAGACATTTGTCAAACCATATTTGTCAACACACCAAAGGATTTAAATTCAGGATATCATGTCAGGCAGCATGCTAACCTTGTCACTGCAATAGTCTGTCACTACAAAATTATTTCTCAAATTATCATTACAGATATTCCAAACTTAACTATTACAAGACTGTTTCTGTCCGTTTTAATGGtgaattttttttacattaaaaaataaatcaagtTAATTGCAGGATTTGCTTGGATTAATGGCAAACATTTGAAATTGCTCAAATTGAGCTGTAATTTAAGATGTTTTATACCAAAAGCATTACAAGAATATCAATGTCTTGATTTTGTCCAAAGTAACAGCAAGCAAAATCTGGTAAATTAATAAAGTGCACTTTCTTTAACCTCAATGTCAAGTTGTTTTGACATCGCATTGTTGTTTTTAGCTCTATAGATTATTTGGGATATTTTCAGTGGATTTTAAACGCTTTCAAACAATGCGATTAATCACATAAAAAAGTGTGCACTTAAATGACAAAAAGTTAACTTGGGTTAAAGGCCCAATGTAGCCATTTTCATATCAATATCAAATAAGGACCTTACTGTAAGATTtacattaaaatgggcaaaattACCTTTTTATTTGAGGGAACTCACTATTATTGGAAAGCACACACATAGAGAAttatagaggcctctagtggccagaATTCAGTTTTAGCATGTGCAGCACCATTGAGGACTTCCACCATTCTAATATAGTCAACTGGGTGagacttccaacttcattggctgatccctccttgTGACCCTGTTGgagactactttaaaatggagatagtatgggcagtgccattgaggctgTCACAGACgcctcacagtgtgTGTGTAACGCGAGTCTCAATTTCATGTTTGTAATGTCATCTATTTCGTGCAATAAACCCAACATGAATGAAGATGTGCATGTTGGGGTTTCAGATTCTCTTTGGAGAATTTTCCAGGCAGGAATTTACATTGTAGGAAGAACACTGACTTCACTGTAATGTGAACATTTAGAAAAGTAATAACACTTTGCAATACCTTTGGTAAATACTTTAGAAATATCTGCGATGCAGCAACAACATTTATTTTCATAAATGATTCAAGGCATGTGTCTTTGTATTCCGGTGTTTACAGTACATACTTTGAATCcatttatttggtaaaagatacATTATTTTCATGCTATTCACAGCCCTCACCCTGTCTGTCCAATTCCATTTTGAAGGTCTCAGTGGCACAGCATAGTACTGTACAAAAGCTCTTTCCTAATGTTTATGAAATGAATTATGAAATGCTACCGAAGGTTTTCAGAGAGACCAGTTAAAAATGAGGAATCATGTCTGCTATGAATCATATTTCTATCTGCGGCATCCTGAAAATTGTACCATATTGAATAAGCCCCATTTCCCCCCC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977274.1 False 2517 mRNA 0.56 2 30966139 30972343
TU441408 True 1964 lncRNA 0.37 5 30971363 30975087

Neighbor

gene id symbol gene type direction distance location
LOC110522910 LOC106565903 coding upstream 110541 30741854 ~ 30856071 (+)
LOC110523597 LOC106565929 coding upstream 254479 30674936 ~ 30711660 (+)
rgs3a LOC106565973 coding upstream 470179 30339806 ~ 30495960 (+)
LOC110523600 LOC106567149 coding upstream 705834 30256373 ~ 30260305 (+)
LOC110524742 LOC106567059 coding upstream 748424 30133672 ~ 30217715 (+)
LOC110523608 NA coding downstream 1180565 32152908 ~ 32160417 (+)
lhx3 lhx3 coding downstream 1285585 32257928 ~ 32270782 (+)
LOC110523612 LOC106565885 coding downstream 1361159 32333502 ~ 32336514 (+)
LOC110523614 LOC106565718 coding downstream 1368533 32340876 ~ 32390222 (+)
nup214 LOC106565702 coding downstream 1432155 32404498 ~ 32485105 (+)
G388623 NA non-coding upstream 125262 30840640 ~ 30840877 (+)
G388617 NA non-coding upstream 135887 30829242 ~ 30830252 (+)
G388616 NA non-coding upstream 139616 30826300 ~ 30826523 (+)
G388615 NA non-coding upstream 140154 30825709 ~ 30825985 (+)
G388720 NA non-coding downstream 27428 30999771 ~ 31045641 (+)
G389395 NA non-coding downstream 407928 31380271 ~ 31380605 (+)
G389447 NA non-coding downstream 470827 31443170 ~ 31443501 (+)
G389728 NA non-coding downstream 658845 31631188 ~ 31631449 (+)
G389732 NA non-coding downstream 660928 31633271 ~ 31633553 (+)
G388019 NA other upstream 678315 30286951 ~ 30287824 (+)
G387516 NA other upstream 1068005 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 1219945 29741800 ~ 29763439 (+)
spag8 LOC106566715 other upstream 2035208 28926263 ~ 28931410 (+)
G385805 NA other upstream 2548584 28416605 ~ 28417555 (+)
G390184 NA other downstream 988012 31960355 ~ 31960745 (+)
G390393 NA other downstream 1247838 32220181 ~ 32220533 (+)
G391513 LOC100136561 other downstream 2186483 33158826 ~ 33162980 (+)
G391805 NA other downstream 2388614 33360957 ~ 33361341 (+)
G392776 NA other downstream 3175131 34147474 ~ 34150795 (+)
G388692 NA non-coding upstream 2062 30968998 ~ 30969301 (+)

Expression


Co-expression Network