LOC110523608


Basic Information

Item Value
gene id LOC110523608
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 32152908 ~ 32160417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473470.2
AGGAGGCGGACTACAGTACATTGGCCATTCATCAAAGACGGCTAGGTAGACAAACACCCACATGCCTAGCATAGCAGCGTCCCAGACGATACAAACAGACTGCACGTACACATCGGCGTTCAAGgtatacTGACAGGGAGGCAAACAAGCACTCAGTCACAGCAGCCATCTTCTTCCTTCCTGAGCCCTTCAATGTAGATTCCAGAGgtctctacattatggacaagACTTCATCCTCCCTACACCGCTGATGAATATAACTGGAAACCTGTTcgatcaccatgcactgcaaaatcattctTGCTATGGATACGAAGGATATCAACATATTAACACGCCAGAGAAAATATCGACTGAACTTGGAGCTGGGAGTTGACCTTATATTTATCTATTTGAattctgctttgccactaaaatcataataaacattgactACTAAACTATTGTATTATTGTTATGCTgattaataatacaaataataggGGGAAACCCCAAAAGGTTATTCAAGGAAccattaaagtttttttttaagaaCTTAGAGGTTCCCCCAGTTTCAgtttgaagaacccctaaaggagccttttctttttagagtataatacttctgacagccaactttatAACTCCGCCCATAGCTTCTGGActttatagcattcccagaaggcatggattattgagtcgttgttagttttacacttacactgccgttgtgctgtagaatttgtgaattttgtttTGTATAATATATTCTGTGCATTTGTTTATACTGGATTAAAAGTACAATGTTAGCTGTAAATGTGTTAGTTATGTTCCAACATTCCTCCATCTTGTGCTGATATCAGTTCTTTTTTAGTCTTGATTCCAATAGTTaattttttttctaagagattgTCTGTTGGATAGGCcctctgcaaggttttgtatatcttacctatcatatgaatatccttttctgactcaaataggaTTCCTTCAAGACACAGCAGATCTGTTATGTGATGTAATGAGACATATAATGAGGTGTTAGAGAGTGGAATAAGATATGAACATACTCTATTTGCTTTTACAACTCTTGGTTACTATTGTACTTTTCCTGCTGTGGGAGAACTATACTATATCCTGAATGTCTGAATGATCGATATGGCCTGCTGCCATGTCTGTCAATGCATGACATTTAGCACCAAGCATAAAGGAGTCTAATCTCCATGCTTTCCCATATACTCCAGTGCCCATATGGCGACACATGAGCGTAGAGAGTGCTGCCGAGCCCAACCCAGGAAGGCATTGTACATGTAAGGTCAGGCGAAGTGTTGACAGCCCCCTCTTTTAATTACATAGAGCTGAGATCAGCACTAAtggtaagggtgtgtgtgtgtaaatgtgtgtgtgtgctattctGTGAGATTGTATCAACCTATTATTTATCCAATTGAGAAGGTCTCTTCTGTCAGATATTAAATAAATATGCAGTTGTTTGGTTAGGGTTTGAAGGTGATGTTTTAATGAGACAGAGGAACAGGTAAGGTTTTtagaaaaccacacacacacagacacacacatacacacatacatacctacacacacacacacacatagacctacagtactgtaagTGTGGACAAGACATGGCAGGCAAACAGGAAGTGAACAGTAGACTCTCAGGAAGTTGTGACATTCTTGTAAATATGGCCGTATATGGGTGTCGGTTGTGGTTGGTGAACTG
>TU443142
TAAACATTTTAAGATCTCCTTTATTTAAGgtatacTGACAGGGAGGCAAACAAGCACTCAGTCACAGCAGCCATCTTCTTCCTTCCTGAGCCCTTCAATGTAGATTCCAGAGgtctctacattatggacaagACTTCATCCTCCCTACACCGCTGATGAATATAACTGGAAACCTGTTcgatcaccatgcactgcaaaatcattctTGCTATGGATACGAAGGATATCAACATATTAACACGCCAGAGAAAATATCGACTGAACTTGGAGCTGGGAGTTGACCTTATATTTATCTATTTGAattctgctttgccactaaaatcataataaacattga
>TU443140
AGCACTCAGTCACAGCAGCCATCTTCTTCCTTCCTGAGCCCTTCAATGTAGATTCCAGAGgtctctacattatggacaagACTTCATCCTCCCTACACCGCTGATGAATATAACTGGAAACCTGTTcgatcaccatgcactgcaaaatcattctTGCTATGGATACGAAGGATATCAACATATTAACACGCCAGAGAAAATATCGACTGAACTTGGAGCTGGGAGTTGACCTTATATTTATCTATTTGAattctgctttgccactaaaatcataataaacattga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473470.2 False 1723 mRNA 0.40 4 32152908 32160417
TU443142 False 337 lncRNA 0.39 4 32153642 32159126
TU443140 True 285 lncRNA 0.40 2 32158710 32159126

Neighbor

gene id symbol gene type direction distance location
LOC110522913 LOC106565915 coding upstream 1180565 30966139 ~ 30975087 (+)
LOC110522910 LOC106565903 coding upstream 1297310 30741854 ~ 30856071 (+)
LOC110523597 LOC106565929 coding upstream 1441248 30674936 ~ 30711660 (+)
rgs3a LOC106565973 coding upstream 1656948 30339806 ~ 30495960 (+)
LOC110523600 LOC106567149 coding upstream 1892603 30256373 ~ 30260305 (+)
lhx3 lhx3 coding downstream 97511 32257928 ~ 32270782 (+)
LOC110523612 LOC106565885 coding downstream 173085 32333502 ~ 32336514 (+)
LOC110523614 LOC106565718 coding downstream 180459 32340876 ~ 32390222 (+)
nup214 LOC106565702 coding downstream 244081 32404498 ~ 32485105 (+)
LOC110523616 LOC106565683 coding downstream 364164 32524581 ~ 32531600 (+)
G390283 NA non-coding upstream 61419 32086350 ~ 32091489 (+)
G390291 NA non-coding upstream 110539 32042108 ~ 32042369 (+)
G390289 NA non-coding upstream 114548 32037966 ~ 32038360 (+)
G390278 NA non-coding upstream 119905 32032799 ~ 32033003 (+)
G390256 NA non-coding upstream 135717 32016884 ~ 32017191 (+)
G390361 NA non-coding downstream 15889 32176306 ~ 32176517 (+)
G390369 NA non-coding downstream 30901 32191318 ~ 32191719 (+)
G390372 NA non-coding downstream 33783 32194200 ~ 32194428 (+)
G390374 NA non-coding downstream 36214 32196631 ~ 32197569 (+)
G390380 NA non-coding downstream 42192 32202609 ~ 32203613 (+)
G390184 NA other upstream 192163 31960355 ~ 31960745 (+)
G388019 NA other upstream 1865084 30286951 ~ 30287824 (+)
G387516 NA other upstream 2254774 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 2406714 29741800 ~ 29763439 (+)
spag8 LOC106566715 other upstream 3221977 28926263 ~ 28931410 (+)
G390393 NA other downstream 59764 32220181 ~ 32220533 (+)
G391513 LOC100136561 other downstream 998409 33158826 ~ 33162980 (+)
G391805 NA other downstream 1200540 33360957 ~ 33361341 (+)
G392776 NA other downstream 1987057 34147474 ~ 34150795 (+)
G394882 NA other downstream 3744695 35905112 ~ 35905781 (+)

Expression


Co-expression Network