LOC110523612 (LOC106565885)


Basic Information

Item Value
gene id LOC110523612
gene name LOC106565885
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 32333502 ~ 32336514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977283.1
TTTTACGACAGGACGTATTCACCGGTTGTCAGAGCAACACCCTACCGCCGCTGTTGAGTTACATTAGCAAGTATAGCCATTTATATCAAAGGAACGTGGTATCCGAGGGAATTGCTGCAACTACTCAGTTTGTTACTTTGTGTATATATCTTTGTGCAACGAGTTATAACATGTTGACCTGCATCAGTCGTTTCAGAGCGCACCACCACCATTGTGGTGAATAGGAAGACGTTTGAGAAAGTCATGCAGCATCGAATCGATTGCTGAGAATTCAGTGTTCACGACATCTTTCAAGAAAACTCAATGTCCATTTTCTAAACGAACGAGCCCTGTTGCCTTTTGGATGCACGTAGCAACATACACCAAACAGGCCTAATCAGAGACCTACATTCCATGCCTGTGGTCCCCTTGCTAAGCACTAAAAGCCAGCCAATGATGCTAACCTTCACCACCCCTGAAGCAGAGGACGAAGCCTGTTGCCGGGACTCCCCGCAGAAACCTAGACCTCAATTCACCCACTCATGCCTGTGATCCCTATCCCTCGGCGAGTGCGCAGCTTCCATGGCCCCCACACCACCTGCATGCACTCAGCCTGCGGGCCGGCGCGCACCACCCAGCTTGTGCGCACCAAGTACAACAACTTTGACCTGTACCTGCGCTCGCGCTGCATGTACGGCTTCCTGCGCTTCCTGCTCTACTTTGGCTGCAGCCTTCTGACCTCCCTCCTCTGGGTGTCGCTGTCTGCTCTCTTCTGCCTGCAGTACGTGAGCGCGCGCCTTTTCTTGCGGCTGCAGTACAAGCTGTCCGTGATCCTGCTGTTGCTAGGACACCGGCGCTTTGACTTTGGGGTGCTCAACAACCTGTTCATCTACAGTATGCAGGTCACAATGTTCCTGGTGGGAGGCCTGGGCTGGTGCTTCTTGGTGTTTGTGGACATGTAGCGTCTGGTTACAACAGACCATGGATCACTGTTTTATGCCAATGTCAGACATCCACCTGAGTGATgcacggcagccattttgtaccaaaacactacacacagcaGCAGTTGTGATGAAGGCGTGAGGATGACCAGGAATAAAAGGTGGTCAGATTATATAGTGCAGGAATTCATGAAAGACCAGACAATCATACTTtttttcacaaacacacacacatacacacacagaaaagtatgtggacagcccttcaaattagtggatttggctatttcaggatcaccctttgctgacagttgtataaaatcaagcacacagccatgcaatctccatacacaaacattggcagtagacttACTTAAAGAGCTCAgttactttcaacgtggcaccatcataggatgccacatttccaacaagtcaattcgtAAAAATTTTGccgtgctagagctgccccggtcaactgtaagtgctgttattgtgaagtggaaacgttgaGGACTTAGCCACAAAaaggcagccacacacaagcctaagaccacCATGTGCAATGACAAGCgtcggctggaatggtgtaaagcttgccaccattggactctggagcagtggaaatgcgttctctggagtgatgaatcccgcttcaccatctggtagtccaaCGGACTAATCTGAATTtgtcggatgccaggagaacgctacctgctccaatagtgccaactgtaaagtttgttggaggaggaagGATGTCCTGgagcgaggttcatacagaaatggtttgtcgagattggtgtgaaagaacttgactggcctgcacagagccctgacctcaaccctataaaacacctttgggatgagcCATGCGAGCCATGCCCAATCGCCGAACATCAGTGCCAGGCCTCATAATGCTCTTGTGTCTGGCTGAAAGCAAGTcgccacagcaatgttccaacatctagtggaaagccttccctgaagagtggaggctgttatagcagcaaagggaaaaccactccatatgaatgcccatgattttggaatgagattttcattgagcaggtatccacatacttttggtcatgtagtgtatattagcTATCAAACCATGTAAAGGAACAACCTaattctgtatatatatattttttaaatgcaacTAACTGGATTTATGTCAACTCTGTCAGACACCATAAAAGGCATTTCATTTTTACATGTATTGTCCAACAAGTGTTTAAAGGCCTTGCTTGTTTCATTCTAACACGGGTATTATTACATATTTGAATAATCTAATCTCCAAActtctttttgttttgttttatagcGCTATATAATGCTTCAGGactaattttgttagcattttGGCATGTTTTTCCTGATTTAAAACATAAAACAACGTTTATAAAGCAAACATTATCCCTTCGGTCTAGCACAGCAAATGTGTCAATAGTTGAAGCATGTGTTGCAGAACAGtgatttaaattatttttttctgaATGTTAACGCATATCGATTTTAATAGGGCTGGCCATCATTGACGGAGTTGACAAGCCACTGACGGAGTTGACAACAAATACTCAAAACATTGACATTTTTGCTTCAATAGAAACATTTGTCAAATGtacaaaaatgttttatttgaaaaCCCCCAATAGAAATATAACCATTATATTAGATCTTTCAGCACTCTGACGGAGTTGATGTTAGACAAAAATCTGACAGAGTTGATGTTTTACGGAGTtgacaaaaaaactattttttcatCTTCATTAAAGTGCTTTACAAAGTAGCAAA
>TU443434
GCAACACCCTACCGCCGCTGTTGAGTTACATTAGCAAGTATAGCCATTTATATCAAAGGAACGTGGTATCCGAGGGAATTGCTGCAACTACTCAGTTTGTTACTTTGTGTATATATCTTTGTGCAACGAGTTATAACATGTTGACCTGCATCAGTCGTTTCAGAGCGCACCACCACCATTGTGGTGAATAGGAAGACGTTTGAGAAAGTCATGCAGCATCGAATCGATTGCTGAGAATTCAGTGTTCACGACATCTTTCAAGAAAACTCAATGTCCATTTTCTAAACGAACGAGCCCTGTTGCCTTTTGGATGCACGTAGCAACATACACCAAACAGGCCTAATCAGAGACCTACATTCCATGCCTGTGGTCCCCTTGCTAAGCACTAAAAGCCAGCCAATGATGCTAACCTTCACCACCCCTGAAGCAGAGGACGAAGCCTGTTGCCGGGACTCCCCGCAGAAACCTAGACCTCAATTCACCCACTCATGCCTGTGATCCCTATCCCTCGGCGAGTGCGCAGCTTCCATGGCCCCCACA
>TU443435
TCACAATGTTCCTGGTGGGAGGCCTGGGCTGGTGCTTCTTGGTGTTTGTGGACATGTAGCGTCTGGTTACAACAGACCATGGATCACTGTTTTATGCCAATGTCAGACATCCACCTGAGTGATgcacggcagccattttgtaccaaaacactacacacagcaGCAGTTGTGATGAAGGCGTGAGGATGACCAGGAATAAAAGGTGGTCAGATTATATAGTGCAGGAATTCATGAAAGACCAGACAATCATACTTtttttcacaaacacacacacatacacacacagaaaagtatgtggacagcccttcaaattagtggatttggctatttcaggatcaccctttgctgacagttgtataaaatcaagcacacagccatgcaatctccatacacaaacattggcagtagacttACTTAAAGAGCTCAgttactttcaacgtggcaccatcataggatgccacatttccaacaagtcaattcgtAAAAATTTTGccgtgctagagctgccccggtcaactgtaagtgctgttattgtgaagtggaaacgttgaGGACTTAGCCACAAAaaggcagccacacacaagcctaagaccacCATGTGCAATGACAAGCgtcggctggaatggtgtaaagcttgccaccattggactctggagcagtggaaatgcgttctctggagtgatgaatcccgcttcaccatctggtagtccaaCGGACTAATCTGAATTtgtcggatgccaggagaacgctacctgctccaatagtgccaactgtaaagtttgttggaggaggaagGATGTCCTGgagcgaggttcatacagaaatggtttgtcgagattggtgtgaaagaacttgactggcctgcacagagccctgacctcaaccctataaaacacctttgggatgagcCATGCGAGCCATGCCCAATCGCCGAACATCAGTGCCAGGCCTCATAATGCTCTTGTGTCTGGCTGAAAGCAAGTcgccacagcaatgttccaacatctagtggaaagccttccctgaagagtggaggctgttatagcagcaaagggaaaaccactccatatgaatgcccatgattttggaatgagattttcattgagcaggtatccacatacttttggtcatgtagtgtatattagcTATCAAACCATGTAAAGGAACAACCTaattctgtatatatatattttttaaatgcaacTAACTGGATTTATGTCAACTCTGTCAGACACCATAAAAGGCATTTCATTTTTACATGTATTGTCCAACAAGTGTTTAAAGGCCTTGCTTGTTTCATTCTAACACGGGTATTATTACATATTTGAATAATCTAATCTCCAAActtctttttgttttgttttatagcGCTATATAATGCTTCAGGactaattttgttagcattttGGCATGTTTTTCCTGATTTAAAACATAAAACAACGTTTATAAAGCAAACATTATCCCTTCGGTCTAGCACAGCAAATGTGTCAATAGTTGAAGCATGTGTTGCAGAACAGtgatttaaattatttttttctgaATGTTAACGCATATCGATTTTAATAGGGCTGGCCATCATTGACGGAGTTGACAAGCCACTGACGGAGTTGACAACAAATACTCAAAACATTGACATTTTTGCTTCAATAGAAACATTTGTCAAATGtacaaaaatgttttatttgaaaaCCCCCAATAGAAATATAACCATTATATTAGATCTTTCAGCACTCTGACGGAGTTGATGTTAGACAAAAATCTGACAGAGTTGATGTTTTACGGAGTtgacaaaaaaactattttttcatCTTCATTAAAGTGCTTTACAAAGTAGCAAATGTGTTCTTCCGGAGTTGCTGTATGACTCAAAAATCGAACTTATTCTAacgtatccaggctgtatcaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977283.1 False 2720 mRNA 0.44 2 32333502 32336445
TU443434 False 540 lncRNA 0.48 2 32333535 32334298
TU443435 True 1907 lncRNA 0.41 1 32334608 32336514

Neighbor

gene id symbol gene type direction distance location
lhx3 lhx3 coding upstream 62720 32257928 ~ 32270782 (+)
LOC110523608 NA coding upstream 173085 32152908 ~ 32160417 (+)
LOC110522913 LOC106565915 coding upstream 1361159 30966139 ~ 30975087 (+)
LOC110522910 LOC106565903 coding upstream 1477904 30741854 ~ 30856071 (+)
LOC110523597 LOC106565929 coding upstream 1621842 30674936 ~ 30711660 (+)
LOC110523614 LOC106565718 coding downstream 4431 32340876 ~ 32390222 (+)
nup214 LOC106565702 coding downstream 68053 32404498 ~ 32485105 (+)
LOC110523616 LOC106565683 coding downstream 188136 32524581 ~ 32531600 (+)
prrc2b NA coding downstream 219636 32556081 ~ 32597277 (+)
LOC110523621 LOC100194632 coding downstream 270674 32607119 ~ 32623203 (+)
G390610 NA non-coding upstream 15133 32318155 ~ 32318369 (+)
G390450 NA non-coding upstream 20140 32313137 ~ 32313362 (+)
G390446 NA non-coding upstream 28673 32304606 ~ 32304829 (+)
G390396 NA non-coding upstream 109405 32223748 ~ 32224097 (+)
G390394 NA non-coding upstream 111067 32222227 ~ 32222435 (+)
G390649 NA non-coding downstream 66381 32402826 ~ 32403113 (+)
G390700 NA non-coding downstream 199968 32536413 ~ 32536927 (+)
LOC118964584 NA non-coding downstream 317257 32653382 ~ 32654170 (+)
LOC110523622 lzts3 non-coding downstream 378045 32704625 ~ 32717006 (+)
G390393 NA other upstream 112969 32220181 ~ 32220533 (+)
G390184 NA other upstream 372757 31960355 ~ 31960745 (+)
G388019 NA other upstream 2045678 30286951 ~ 30287824 (+)
G387516 NA other upstream 2435368 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 2587308 29741800 ~ 29763439 (+)
G391513 LOC100136561 other downstream 822381 33158826 ~ 33162980 (+)
G391805 NA other downstream 1024512 33360957 ~ 33361341 (+)
G392776 NA other downstream 1811029 34147474 ~ 34150795 (+)
G394882 NA other downstream 3568667 35905112 ~ 35905781 (+)
G394910 NA other downstream 3630492 35966937 ~ 36004829 (+)

Expression


Co-expression Network