LOC110523616 (LOC106565683)


Basic Information

Item Value
gene id LOC110523616
gene name LOC106565683
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 32524581 ~ 32531600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602474.2
CCGAGATGACTATGGATTTGTTGATTGCCTTTAATTAACTCGACACTGTCTAGCTATAATTCTTTCCGCATTCTCTAAATTCCAATCCAAGAGCCAGTGTTGTGCAGCGCGCGAAAGGGATCTGAACGATAGCCCATTCCTATACTTCGGCCTGATTGTGTCTCGTTCGATTGGCCCAGGCAGATGTCAGTCAAGACTCTTCATGCCTGCATGGATCCCGTTGCAGGCTAAACACAGCAGCATGGGCTGCGCGCATTCCAACCGGCTAAATATATCTGATTGGGCCACAGGAGGGGAAGGACAGGGCGACAGGGCTTAGCTTTGGACATTTAGCCTCCGTGCGTAAAACGAGAAATTGTCCTTCTGAAACGTAGTAAAGTGAGACCAATCCAAAATGCCCGCAATTCCGAGTTCTAGGTCCAGGACGCGGGATCGGAACAACGTCCTGAGCAGACCCGAGTTCATGTCCCTGAATCAGCCTCTCCGGTGCGTTAACTCTGAAACCCGTGGCACCGCAAGGCGACCGGCCCAACCCAAACACCAAGCAAGCCAACCGTGCGACCCGCAGGAACCTACCGACAGTGCCAACAAGGATCGGAAAGAACCCGCGAAACTGCCCGATGAGGACTGTATCCAGCTGAACCCTTCCTTCAAAGGGATAGCGATGAGCTCCCTCCTCGCCATTGACATTTGTCTGTCCAAGCGCCTGGGGGTCTGCGCCTACACGTCGTCGTCTTGGGGCAGCGTTCGTTCCATGATCACCCTGCTCGCGCTTACAGGGCACGGAATCACGTGGATCTTTGGCACTATCGTGTGTCTGACAAGGAGTAATACGCTGGCTGGACAAGAGGTCTTGGTCAATCTATTACTTGccctcctACTTGACATCATGACTGTGGCCGGTGTCCAGAAGCTGATCAAACGCAAAGGACCCTGGGAGATGACTCCGGGCTTCCTGGACTACTGTGCCATGGACGTGTACTCCTTCCCGGCGGCCCACGCCAGTCGCGCTGCCATGGTGTCCAAGTTCCTGCTTTCCCACCTGGTCCTGGCCGTTCCACTCCGCATCCTGCTGGTGCTCTGGGCCTTCCTGGTGGGCATGTCCCGGGTGTTGCTGGGTAGGCACCACCTAACCGACATGGCGTGTGGCTTCGCCCTTGGCCTGCTGCACTTCAGCCTGGTGGAGACGGTGTGGCTGTCGTCCAGCGCCTGTCAGACCCTCATCTCTATAGGGACCCTCAGCTGGAGCCCTTTCTATTGAGGGCTATCTATCAAGGCCCTCAACTCCTGTTTGAATCTGTAAAGCCTGGCTTTATGAAGCCATATAAGTAAggtcaggagtttttcctgacgaGAGTTTTTCCTGATCAGGGCCTACTGTCTAAGGCTGCGTTAGACCTACATATAAGCTTTATCTGTGATGACAATAACTTCTATACACACAATTAGGTCCTATCTGGGTGACCTCATTTACAGTATTTGCAGTAAATGTTATTTGAGGGAGGTAAATGTGCTCGTTGGAGACATTTTGATCATTGATGACTCAAAGAAAGAAAATGTGGTAGTGTTGatatttattcatatttacaaagACTTTTATAATGTCTCTACCACCTTTTCTCTTCCACTGAACTAATCATAATGCTTGAGAGCCCACACTGGCGTATATCGAATGTTATTGGTTCTCACTGCTGTCagtttctttcttttctttctgccTATTCCACCACTCCTcaccttcctctttctcttctgcATCCTTTTCCTCTTTTCCCCCGttcctctttcctcctgtctGTCAACCTTTACCCCTTTTTgtcttttgaaatgtttttaatTGTACTTGATCAAAATATTGCCCAGTACTTTGAAGGTAAGAAATGGTTTTCTAACGGTTTTGAAATGTGTCCACACATGATTAGTCCATTTGCATATTAAGAAAAAAGACGTTAGGAAGCTCTTTGATTTCCTTTCAATTATGTTGTTTGTATGTTTCTGCTGGAAACTATCAATTGTTAAAACTACCAATTGTTGAGATGGACTGGACTCCAAATGAATATATTTCTGCTGTCGTTGAAATGGGCTATTATGTAAAATAAATAGCATCATTGTTGTCTAGATCAGGGATTTTTCTACTGGGTTAAATATTTATCTTATCCAAATAAGTTTCAAAAGTAGGTTTTGATTAGTTTGAGGCTAGCAGTTTCATGATAGATGTGTATGTGTATTCCATATTGTTTGCCTTCCCTGCAGCAATAAGCATTAACCAAACAGACACTGTCGGTTTGGTAATGATGCTTATTTCATGCCTCACTGACTGAACAACATCTGTGAGAAGTCTCCATCAGGCCTGGGCTTACcattgacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacgtgggTATGTGCGGATGAttgcgtgtgtgtctctgtgtgtctctgtgtgtctgtgcatgtgtgtgtgtctgtgcatgtgtgtgtgcattgcatGCAAGATCTCTTatgtttgtgcctttgtgagcCAAATGTAATGTATTTTGGAGCGTTAAAGTCAATGAGTAAACCTATGCAGTCTGGGTAAAGTCATGAATGTTCACTGAAGTGTACAAAATATGTATTATACCTGATttctttataaactcagcaaaaaaagaaacgtc

Function

NR:

description
PREDICTED: probable lipid phosphate phosphatase PPAPDC3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602474.2 True 2668 mRNA 0.46 3 32524581 32531600

Neighbor

gene id symbol gene type direction distance location
nup214 LOC106565702 coding upstream 39476 32404498 ~ 32485105 (+)
LOC110523614 LOC106565718 coding upstream 134359 32340876 ~ 32390222 (+)
LOC110523612 LOC106565885 coding upstream 188136 32333502 ~ 32336514 (+)
lhx3 lhx3 coding upstream 253799 32257928 ~ 32270782 (+)
LOC110523608 NA coding upstream 364164 32152908 ~ 32160417 (+)
prrc2b NA coding downstream 24481 32556081 ~ 32597277 (+)
LOC110523621 LOC100194632 coding downstream 75519 32607119 ~ 32623203 (+)
LOC118964584 NA coding downstream 121782 32653382 ~ 32654170 (+)
LOC110523625 ddrgk1 coding downstream 152708 32684308 ~ 32694378 (+)
LOC110523626 LOC106565624 coding downstream 163147 32694747 ~ 32701711 (+)
G390649 NA non-coding upstream 121468 32402826 ~ 32403113 (+)
G390610 NA non-coding upstream 206212 32318155 ~ 32318369 (+)
G390450 NA non-coding upstream 211219 32313137 ~ 32313362 (+)
G390446 NA non-coding upstream 219752 32304606 ~ 32304829 (+)
G390700 NA non-coding downstream 4813 32536413 ~ 32536927 (+)
LOC110523622 lzts3 non-coding downstream 182890 32704625 ~ 32717006 (+)
LOC110523627 LOC106565641 non-coding downstream 203382 32734905 ~ 32736553 (+)
G390393 NA other upstream 304048 32220181 ~ 32220533 (+)
G390184 NA other upstream 563836 31960355 ~ 31960745 (+)
G388019 NA other upstream 2236757 30286951 ~ 30287824 (+)
G387516 NA other upstream 2626447 29896986 ~ 29898134 (+)
tbx5a LOC106566939 other upstream 2778387 29741800 ~ 29763439 (+)
G391513 LOC100136561 other downstream 627226 33158826 ~ 33162980 (+)
G391805 NA other downstream 829357 33360957 ~ 33361341 (+)
G392776 NA other downstream 1615874 34147474 ~ 34150795 (+)
G394882 NA other downstream 3373512 35905112 ~ 35905781 (+)
G394910 NA other downstream 3435337 35966937 ~ 36004829 (+)

Expression


Co-expression Network