prkab1a (LOC106565185)


Basic Information

Item Value
gene id prkab1a
gene name LOC106565185
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 35365365 ~ 35380100 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602559.2
GCTTTCCCTGCTGGACTGAGCCTTGATAGCCCATTAAAGGTCGACACTTCCACCAGGTGGTAAGAAAGTGAAACTGCATGCGCTCTCTGACCGTCAAGAAAGAAAAGAGGCGGGGCGCCCTGGAATGATGAGGAAGGTTGTGTTGTCAACAACAGAACGTGGGAAAATTGTCAAATAAAAGACGAGCATTTTAGTGGTGTAAACTGACATCAATTCTAAGTGATTTTGGCTTATTGACACAGCAGGGGACCATGGGGAACACTAACACCGGTATGGGTACGGGACACAGGCGAGACAGCCGTGCCAAGGAGGGCGACAGGCCTAAAATCCTCATGGACAGTCCAGAGGATGCTGATATGTTCCATGGAGAGGACATCAAGGCTTCACTAGAGAAAGAGGAGTACCTTGCATGGCGGCAGGACCTGGAGGCTGATAAAGGGCCCACACTGGACCGCCCCACTGTGTTCCGCTGGACTGGAAGCGGAAAGGAGGTCTTTCTGTCCGGTTCCTTCAACAACTGGGCCAACAAGATTCCCCTAACCAGGAGTCAGAACAACTTTGTGGCAATTGTGGATCTGCCTGAAGGGGAGCATCAGTATAAGTTCTATGTGGACGGCACATGGACCCATGACCCAGCTGAGCCTGTTGTAACCAACCAGCTAGGGACAGTCAACAATGTCATCCAAGTGAAGAAGACTGACTTTGAGGTGTTTGATGCACTTATGGTGGACTCACAGAAATGCTCTGATATGTCAGGTCAGTGTCAAGACCTGTCTAGCTCTCCTCCCGGACCATACCATCAGGACCCTTACACACCCAAGCAGGAAGAAAAGTTCAAGTCTCCGCCCATTCTCCCACCTCACTTGCTACAGGTCATCCTAAACAAGGACACAGGAATCTCTtgTGACCCTGCATTGCTCCCAGAACCCAATCATGTCATGCTCAATCACCTCTACGCCTTGTCCATCAAGgatggtgtgatggtgcttaGTGCGACTCATCGCTACAAGAAGAAGTATGTCACCACCCTGCTGTATAAGCCGATCTGACCAGAGGTCTATGGCGTCTCTGCCTTTGCACCGCAGACACCACAGCTTCTCACAGCACAGCCTCCAGCATTACACCTGTACATATCTCAGTTTAGAGTTATTTCTATCACCCCAATCTTCCTCAGTCTGCCTTTCCTCTTGTTCAATGACTGCCATCCCATTTGCTGATCACCAACCTTGCTTTGTTATAGACATAGAGGAGTACTAGGTAGCAGAATAGTTACGCATAGGAAGGATAGAGACGTTTTAGGGGTGGTGGTGAATTCTGACTGATAATACGTAAGGGTTGTGTTGTGACCTGTGCTTGATGACAGGAGGTCCCTTCATCAGACAAGAACAGGAAATAGTATAACAGGAAGTAGTAGGTAAGATGCAGTATCATGGAAAACCATACAGTGTTTGATTTTGGACGGATGCCCCAGTGTTGCTGTACAGTAGTAATAATCATGGATTTTGCCAGTGGAGTTTTTTTTTCCTGCCTTTTTATTGTGATTTTCTCTTCAGCCTCTGTTACTTGCCATTTGGCCAGTGTGCCTTTGTATCATTATGCTTCACCAGCTATATCCATTTGCGTATCAGTGCACATGTTTAATTTAAATAGTAGTAAGTTAAGTAATCATTAGATAGTGCTGTGTATATTTTCTAAATGACTATATATGGTCTAAAACACCTCCCCTACATGTGAATCCAAGGGACCAACTCAGTGCGGTGACAGACAAGCAGAGTTGGAGATGGATTAATGAGGCTTGAAGCTCCTTTGACATCCTTGTTAATGTAACCCTCTTGGACCATGTTGTGTACATTTGTCTTCtttgtttccagatttctatccCAATAAAGATAATTGATTTTATAGCA
>XM_036977339.1
ATCATTATGAGACATCCTCCCTTCACTAGCCTTCTGTTTGTGTATTATGGAGGGAGGCTGGAAAGGGAGTAATTTGTACTGGCATATAGGACATGCAGAAGCTTTCCCTGCTGGACTGAGCCTTGATAGCCCATTAAAGGTCGACACTTCCACCAGGTGGTAAGAAAGTGAAACTGCATGCGCTCTCTGACCGTCAAGAAAGAAAAGAGGCGGGGCGCCCTGGAATGATGAGGAAGGTTGTGTTGTCAACAACAGAACGTGGGAAAATTGTCAAATAAAAGACGAGCATTTTAGTGGTGTAAACTGACATCAATTCTAAGTGATTTTGGCTTATTGACACAGCAGGGGACCATGGGGAACACTAACACCGGTATGGGTACGGGACACAGGCGAGACAGCCGTGCCAAGGAGGGCGACAGGCCTAAAATCCTCATGGACAGTCCAGAGGATGCTGATATGTTCCATGGAGAGGACATCAAGGCTTCACTAGAGAAAGAGGAGTACCTTGCATGGCGGCAGGACCTGGAGGCTGATAAAGGGCCCACACTGGACCGCCCCACTGTGTTCCGCTGGACTGGAAGCGGAAAGGAGGTCTTTCTGTCCGGTTCCTTCAACAACTGGGCCAACAAGATTCCCCTAACCAGGAGTCAGAACAACTTTGTGGCAATTGTGGATCTGCCTGAAGGGGAGCATCAGTATAAGTTCTATGTGGACGGCACATGGACCCATGACCCAGCTGAGCCTGTTGTAACCAACCAGCTAGGGACAGTCAACAATGTCATCCAAGTGAAGAAGACTGACTTTGAGGTGTTTGATGCACTTATGGTGGACTCACAGAAATGCTCTGATATGTCAGGTCAGTGTCAAGACCTGTCTAGCTCTCCTCCCGGACCATACCATCAGGACCCTTACACACCCAAGCAGGAAGAAAAGTTCAAGTCTCCGCCCATTCTCCCACCTCACTTGCTACAGGTCATCCTAAACAAGGACACAGGAATCTCTtgTGACCCTGCATTGCTCCCAGAACCCAATCATGTCATGCTCAATCACCTCTACGCCTTGTCCATCAAGgatggtgtgatggtgcttaGTGCGACTCATCGCTACAAGAAGAAGTATGTCACCACCCTGCTGTATAAGCCGATCTGACCAGAGGTCTATGGCGTCTCTGCCTTTGCACCGCAGACACCACAGCTTCTCACAGCACAGCCTCCAGCATTACACCTGTACATATCTCAGTTTAGAGTTATTTCTATCACCCCAATCTTCCTCAGTCTGCCTTTCCTCTTGTTCAATGACTGCCATCCCATTTGCTGATCACCAACCTTGCTTTGTTATAGACATAGAGGAGTACTAGGTAGCAGAATAGTTACGCATAGGAAGGATAGAGACGTTTTAGGGGTGGTGGTGAATTCTGACTGATAATACGTAAGGGTTGTGTTGTGACCTGTGCTTGATGACAGGAGGTCCCTTCATCAGACAAGAACAGGAAATAGTATAACAGGAAGTAGTAGGTAAGATGCAGTATCATGGAAAACCATACAGTGTTTGATTTTGGACGGATGCCCCAGTGTTGCTGTACAGTAGTAATAATCATGGATTTTGCCAGTGGAGTTTTTTTTTCCTGCCTTTTTATTGTGATTTTCTCTTCAGCCTCTGTTACTTGCCATTTGGCCAGTGTGCCTTTGTATCATTATGCTTCACCAGCTATATCCATTTGCGTATCAGTGCACATGTTTAATTTAAATAGTAGTAAGTTAAGTAATCATTAGATAGTGCTGTGTATATTTTCTAAATGACTATATATGGTCTAAAACACCTCCCCTACATGTGAATCCAAGGGACCAACTCAGTGCGGTGACAGACAAGCAGAGTTGGAGATGGATTAATGAGGCTTGAAGCTCCTTTGACATCCTTGTTAATGTAACCCTCTTGGACCATGTTGTGTACATTTGTCTTCtttgtttccagatttctatccCAATAAAGATAATTGATTTTATAGCA
>XM_021602560.2
CAGGCATCATTATGAGACATCCTCCCTTCACTAGCCTTCTGTTTGTGTATTATGGAGGGAGGCTGGAAAGGGAGTAATTTGTACTGGCATATAGGACATGCAGAAGCTTTCCCTGCTGGACTGAGCCTTGATAGCCCATTAAAGGTCGACACTTCCACCAGGTGGTAAGAAAGTGAAACTGCATGCGCTCTCTGACCGTCAAGAAAGAAAAGAGGCGGGGCGCCCTGGAATGATGAGGAAGGTTGTGTTGTCAACAACAGAACGTGGGAAAATTGTCAAATAAAAGACGAGCATTTTAGTGGTGTAAACTGACATCAATTCTAAGTGATTTTGGCTTATTGACACAGCAGGGGACCATGGGGAACACTAACACCGGTATGGGTACGGGACACAGGCGAGACAGCCGTGCCAAGGAGGGCGACAGGCCTAAAATCCTCATGGACAGTCCAGAGGATGCTGATATGTTCCATGGAGAGGACATCAAGGCTTCACTAGAGAAAGAGGAGTACCTTGCATGGCGGCAGGACCTGGAGGCTGATAAAGGGCCCACACTGGACCGCCCCACTGTGTTCCGCTGGACTGGAAGCGGAAAGGAGGTCTTTCTGTCCGGTTCCTTCAACAACTGGGCCAACAAGATTCCCCTAACCAGGAGTCAGAACAACTTTGTGGCAATTGTGGATCTGCCTGAAGGGGAGCATCAGTATAAGTTCTATGTGGACGGCACATGGACCCATGACCCAGCTGAGCCTGTTGTAACCAACCAGCTAGGGACAGTCAACAATGTCATCCAAGTGAAGAAGACTGACTTTGAGGTGTTTGATGCACTTATGGTGGACTCACAGAAATGCTCTGATATGTCAGACCTGTCTAGCTCTCCTCCCGGACCATACCATCAGGACCCTTACACACCCAAGCAGGAAGAAAAGTTCAAGTCTCCGCCCATTCTCCCACCTCACTTGCTACAGGTCATCCTAAACAAGGACACAGGAATCTCTtgTGACCCTGCATTGCTCCCAGAACCCAATCATGTCATGCTCAATCACCTCTACGCCTTGTCCATCAAGgatggtgtgatggtgcttaGTGCGACTCATCGCTACAAGAAGAAGTATGTCACCACCCTGCTGTATAAGCCGATCTGACCAGAGGTCTATGGCGTCTCTGCCTTTGCACCGCAGACACCACAGCTTCTCACAGCACAGCCTCCAGCATTACACCTGTACATATCTCAGTTTAGAGTTATTTCTATCACCCCAATCTTCCTCAGTCTGCCTTTCCTCTTGTTCAATGACTGCCATCCCATTTGCTGATCACCAACCTTGCTTTGTTATAGACATAGAGGAGTACTAGGTAGCAGAATAGTTACGCATAGGAAGGATAGAGACGTTTTAGGGGTGGTGGTGAATTCTGACTGATAATACGTAAGGGTTGTGTTGTGACCTGTGCTTGATGACAGGAGGTCCCTTCATCAGACAAGAACAGGAAATAGTATAACAGGAAGTAGTAGGTAAGATGCAGTATCATGGAAAACCATACAGTGTTTGATTTTGGACGGATGCCCCAGTGTTGCTGTACAGTAGTAATAATCATGGATTTTGCCAGTGGAGTTTTTTTTTCCTGCCTTTTTATTGTGATTTTCTCTTCAGCCTCTGTTACTTGCCATTTGGCCAGTGTGCCTTTGTATCATTATGCTTCACCAGCTATATCCATTTGCGTATCAGTGCACATGTTTAATTTAAATAGTAGTAAGTTAAGTAATCATTAGATAGTGCTGTGTATATTTTCTAAATGACTATATATGGTCTAAAACACCTCCCCTACATGTGAATCCAAGGGACCAACTCAGTGCGGTGACAGACAAGCAGAGTTGGAGATGGATTAATGAGGCTTGAAGCTCCTTTGACATCCTTGTTAATGTAACCCTCTTGGACCATGTTGTGTACATTTGTCTTCtttgtttccagatttctatccCAATAAAGATAATTGATTTTATAGCA

Function

NR:

description
5'-AMP-activated protein kinase subunit beta-1-like isoform X2

GO: NA

KEGG:

id description
K07199 PRKAB; 5'-AMP-activated protein kinase, regulatory beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602559.2 False 1907 mRNA 0.46 8 35365365 35379600
XM_036977339.1 False 2007 mRNA 0.46 9 35365365 35380095
XM_021602560.2 True 2000 mRNA 0.46 9 35365365 35380100
Loading

Neighbor

gene id symbol gene type direction distance location
ppp2r2ab LOC106565222 coding downstream 847792 34502748 ~ 34517573 (-)
bnip3lb LOC100194666 coding downstream 863556 34489789 ~ 34501809 (-)
dpysl2b LOC106565238 coding downstream 886560 34456153 ~ 34478805 (-)
tmem230a LOC106565272 coding downstream 943525 34413398 ~ 34421840 (-)
igsf9a LOC106565253 coding downstream 953835 34381030 ~ 34411530 (-)
phf24 LOC106565165 coding upstream 6072 35386172 ~ 35426546 (-)
LOC110523665 LOC106565855 coding upstream 62426 35442526 ~ 35443774 (-)
pigo pigo coding upstream 70812 35450912 ~ 35466473 (-)
fam166b LOC106565084 coding upstream 266585 35646685 ~ 35657990 (-)
rnf208 LOC106565043 coding upstream 290960 35671060 ~ 35681052 (-)
G394323 NA non-coding downstream 95204 35269949 ~ 35270161 (-)
G394318 NA non-coding downstream 97746 35267411 ~ 35267619 (-)
G394311 NA non-coding downstream 102878 35262256 ~ 35262487 (-)
G394263 NA non-coding downstream 129400 35235735 ~ 35235965 (-)
G394259 NA non-coding downstream 134226 35230695 ~ 35231139 (-)
G394632 NA non-coding upstream 82361 35462461 ~ 35462760 (-)
G394645 NA non-coding upstream 109207 35489307 ~ 35586731 (-)
G394706 NA non-coding upstream 217901 35598001 ~ 35599476 (-)
G394707 NA non-coding upstream 220338 35600438 ~ 35600673 (-)
G395215 NA non-coding upstream 236726 35616826 ~ 35617624 (-)
G392858 NA other downstream 1216737 34147463 ~ 34148628 (-)
G392503 LOC106565394 other downstream 1602984 33734162 ~ 33762381 (-)
G392245 NA other downstream 1983800 33380792 ~ 33381565 (-)
G392227 NA other downstream 2013027 33351417 ~ 33352338 (-)
G387939 LOC106567059 other downstream 5153479 30168119 ~ 30211886 (-)
G395297 NA other upstream 472690 35852790 ~ 35853357 (-)
LOC110523683 NA other upstream 530694 35907698 ~ 35929154 (-)
G395525 NA other upstream 921366 36301466 ~ 36301992 (-)
G395546 NA other upstream 1034022 36414122 ~ 36414915 (-)
G395600 NA other upstream 1066878 36446978 ~ 36447451 (-)

Expression

prkab1a(LOC106565185) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
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prkab1a(LOC106565185) Expression in each Bioproject

Bar chart with 21 bars.
prkab1a(LOC106565185) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network