snx24 (LOC106564872)


Basic Information

Item Value
gene id snx24
gene name LOC106564872
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 36056538 ~ 36064599 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602616.2
CCATACTCTAcagaaacaagaagaagaagaatccaTTCCAACACTAGCCGTAGCTAGCTACCAAAGCCCATCTATGTGTCTGCAAATTAATATATAACTCGGGATTTTATGCATTTAGGTTCGGGTTTGTTTTGCCAAAATGCATAACGTCAGGATTTCCATTCCATCGTTCCGTTCAGAGGACAATCCGATGGAGAAAGGTTACACGGTCTTTAAAATTGAGGTACTAATGAATGGTAGACAGCATACAGTGGAGAAACGCTACAGTGAATTCCATAATCTGCATAAAATACTGAAGAAGAGCATAAAACTGCCTGAGATCCCCTCTAAACATGTACGGAACTGGGTTCCCAAAGTTCTGGAGCAGAGAAGACATGGTCTGGAACTCTACCTACAGACTATAATTATGGAGAATGAAGTTCTCCCAAAGATATTCCTGGATTTCCTCAACATCCGCCACTTTCCCTCGCTGCCAAAAACAGAAAGCTGTGGGTCATTTGAAATGGAATCTGAAGAGTCAAGTAAACTGACCCATCAGCCAACCATGATCTACCAGCGAGACCCCTACCTGCTCCCATCCACCCACGATACATTTTCAAATGTTGTCATAGAAGGAGTGATACATGGAATATTTTACCCAGACCTTCAACCAAGGTAGAGTTACTGTATGCCAGTTTGGAGGACTTACTACTAACTCTTGACGACAAAGGGATGACTCAGAAATGTACACGTTGTAAGCGTCTCAATTTTGTGAACATTATTCTAATagttgtgtgtgtggatatacCATTTTTATCTATTCATAGTCATTTTGTAGTTTGTTTCCCAGCATTAATGGATATGTTGATGAGAGATGCCTTTTCTGAAGTATTGTTACTCAAAGAAGAACACTACTGTAacatggttgcaaagggagggtatattactgaacattttaaaagttaccagtaaactaccagaatttggTAATTTTCAAGGATTTTATTTAATCTACtacaagacatctagtggcccaTTTGAGTacatcagattatcacaggtgtctaatCTCTGGCcttctgtgtggccttatcacatgcaaaataaataatcaaataagatcactttaaaataaaacaattatgacAACGCTGTCAAGGATAATCCTAAATGTTAACCATCAATTTAGTGAACAACATTGGTGTTTAATATTAAATATGCTTTTTTTTCTTGAACCattggtctatccactagaaactcatggacacatatatatatatatatatatatataaaatgaataCTATACTGAcactcagtttattaggtacactacCCCGTTAATGAAAATGGAGCTAAGGCATATGCATATATAGACTCAGCCTTATGGACCAGCAGGCTGTATGCATCTACTAATGGTATTTCCCTAAAATGAAGGTGAGACCTCGCGGTTTTACACTGTGATATGTTGATGAAATAACCTTTAATAGGTCAAACTGTTTAACTCTATATTAGCTATGAATTAATGAAGGGCAGCCGATCAAATGCGTGgttaaaaagctgaaatataaaAAGGGAAGCTGAACTTGTCTGTGTAATAAGATGCATTTTGTTTGTCTGCCTTATCTTAGTGTGTCTCTATTGTAAAGAAGAACAATGTGGTTCATTGTTGCTCTTTTTGAACGTGGGACTGCTGCTGTAAACCTACAACAAAGGGCCATTTTAAAATGCCAGAGTTTTGATCCAACTTAGCGACTGAAGCACTCCAGAGCTAAACTCTTAGCGGTGCTGTAATGTTCCACTGTGCGTAATTCACAGTGGATACTTTTTTGAAGAGTTTAGTTGGTCTAACATTTACTTTGCACTTGTCATTCGTTAGACAATTATGGATGGTTAATACTATAGACACTCTAAAATATGAGGATGGTCTGGGCATCCTTTATTTCTATCCAATGTGTTCTCTGAATTGAGACCAGGTGGACACTAGCACACTTAGTGAATCATTTTTCATTTGTTAAACTAACCCAAGTTTACCTTTTCATTTAAGTCATGTATAGAATTGTCCACTTCAACTGAGAAAAGCATGCCCGGTGTTAACAAATCCAATGATTTTTAATTatcattgttattttttaaatattgtgtGTATATAGCATATGTATGTCCTGTACAGTATGTATCTTGTGCCATGACACCCTACCATTAATGACACTGTGGTGTTGTACTGTAGCACTTTAGGCAGAGCACAGTAATCTGTAAAATATCATGATTAAGACAGACCGCAATAAAGCATGACACTTC
>XM_021602617.2
TCCATACTCTAcagaaacaagaagaagaagaatccaTTCCAACACTAGCCGTAGCTAGCTACCAAAGCCCATCTATGTGTCTGCAAATTAATATATAACTCGGGATTTTATGCATTTAGGTTCGGGTTTGTTTTGCCAAAATGCATAACGTCAGGATTTCCATTCCATCGTTCCGTTCAGAGGACAATCCGATGGAGAAAGGTTACACGCTGAAGAAGAGCATAAAACTGCCTGAGATCCCCTCTAAACATGTACGGAACTGGGTTCCCAAAGTTCTGGAGCAGAGAAGACATGGTCTGGAACTCTACCTACAGACTATAATTATGGAGAATGAAGTTCTCCCAAAGATATTCCTGGATTTCCTCAACATCCGCCACTTTCCCTCGCTGCCAAAAACAGAAAGCTGTGGGTCATTTGAAATGGAATCTGAAGAGTCAAGTAAACTGACCCATCAGCCAACCATGATCTACCAGCGAGACCCCTACCTGCTCCCATCCACCCACGATACATTTTCAAATGTTGTCATAGAAGGAGTGATACATGGAATATTTTACCCAGACCTTCAACCAAGGTAGAGTTACTGTATGCCAGTTTGGAGGACTTACTACTAACTCTTGACGACAAAGGGATGACTCAGAAATGTACACGTTGTAAGCGTCTCAATTTTGTGAACATTATTCTAATagttgtgtgtgtggatatacCATTTTTATCTATTCATAGTCATTTTGTAGTTTGTTTCCCAGCATTAATGGATATGTTGATGAGAGATGCCTTTTCTGAAGTATTGTTACTCAAAGAAGAACACTACTGTAacatggttgcaaagggagggtatattactgaacattttaaaagttaccagtaaactaccagaatttggTAATTTTCAAGGATTTTATTTAATCTACtacaagacatctagtggcccaTTTGAGTacatcagattatcacaggtgtctaatCTCTGGCcttctgtgtggccttatcacatgcaaaataaataatcaaataagatcactttaaaataaaacaattatgacAACGCTGTCAAGGATAATCCTAAATGTTAACCATCAATTTAGTGAACAACATTGGTGTTTAATATTAAATATGCTTTTTTTTCTTGAACCattggtctatccactagaaactcatggacacatatatatatatatatatatatataaaatgaataCTATACTGAcactcagtttattaggtacactacCCCGTTAATGAAAATGGAGCTAAGGCATATGCATATATAGACTCAGCCTTATGGACCAGCAGGCTGTATGCATCTACTAATGGTATTTCCCTAAAATGAAGGTGAGACCTCGCGGTTTTACACTGTGATATGTTGATGAAATAACCTTTAATAGGTCAAACTGTTTAACTCTATATTAGCTATGAATTAATGAAGGGCAGCCGATCAAATGCGTGgttaaaaagctgaaatataaaAAGGGAAGCTGAACTTGTCTGTGTAATAAGATGCATTTTGTTTGTCTGCCTTATCTTAGTGTGTCTCTATTGTAAAGAAGAACAATGTGGTTCATTGTTGCTCTTTTTGAACGTGGGACTGCTGCTGTAAACCTACAACAAAGGGCCATTTTAAAATGCCAGAGTTTTGATCCAACTTAGCGACTGAAGCACTCCAGAGCTAAACTCTTAGCGGTGCTGTAATGTTCCACTGTGCGTAATTCACAGTGGATACTTTTTTGAAGAGTTTAGTTGGTCTAACATTTACTTTGCACTTGTCATTCGTTAGACAATTATGGATGGTTAATACTATAGACACTCTAAAATATGAGGATGGTCTGGGCATCCTTTATTTCTATCCAATGTGTTCTCTGAATTGAGACCAGGTGGACACTAGCACACTTAGTGAATCATTTTTCATTTGTTAAACTAACCCAAGTTTACCTTTTCATTTAAGTCATGTATAGAATTGTCCACTTCAACTGAGAAAAGCATGCCCGGTGTTAACAAATCCAATGATTTTTAATTatcattgttattttttaaatattgtgtGTATATAGCATATGTATGTCCTGTACAGTATGTATCTTGTGCCATGACACCCTACCATTAATGACACTGTGGTGTTGTACTGTAGCACTTTAGGCAGAGCACAGTAATCTGTAAAATATCATGATTAAGACAGACCGCAATAAAGCATGACACTTC

Function

NR:

description
PREDICTED: sorting nexin-24-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602616.2 False 2279 mRNA 0.37 7 36056538 36064598
XM_021602617.2 True 2196 mRNA 0.37 6 36056538 36064599

Neighbor

gene id symbol gene type direction distance location
gmcl1 LOC106564898 coding downstream 14234 36034909 ~ 36042304 (-)
pcyox1 LOC106564891 coding downstream 23297 36025963 ~ 36033241 (-)
stard7 star7 coding downstream 61651 35981756 ~ 35994887 (-)
LOC110523683 NA coding downstream 127384 35907698 ~ 35929154 (-)
ska1 ska1 coding downstream 157107 35896086 ~ 35899431 (-)
loxa lox coding upstream 2187 36066786 ~ 36076554 (-)
LOC110523686 LOC106564853 coding upstream 23830 36088429 ~ 36093845 (-)
LOC110523691 LOC106564841 coding upstream 55702 36120301 ~ 36132692 (-)
LOC110523696 LOC106564838 coding upstream 80043 36144642 ~ 36169437 (-)
smtna LOC100194678 coding upstream 106323 36170922 ~ 36180595 (-)
G395369 NA non-coding downstream 155664 35900604 ~ 35900874 (-)
G395368 NA non-coding downstream 157568 35898571 ~ 35898970 (-)
nt5c2l1 5ntc non-coding downstream 178246 35877313 ~ 35889755 (-)
G395293 NA non-coding downstream 183138 35872871 ~ 35873400 (-)
G395526 NA non-coding upstream 238326 36302925 ~ 36303159 (-)
G395529 NA non-coding upstream 241441 36306040 ~ 36306256 (-)
G395530 NA non-coding upstream 241709 36306308 ~ 36306635 (-)
G395542 NA non-coding upstream 272357 36336956 ~ 36337279 (-)
G395559 NA non-coding upstream 304027 36368626 ~ 36368947 (-)
G395297 NA other downstream 203181 35852790 ~ 35853357 (-)
G392858 NA other downstream 1907910 34147463 ~ 34148628 (-)
G392503 LOC106565394 other downstream 2294157 33734162 ~ 33762381 (-)
G392245 NA other downstream 2674973 33380792 ~ 33381565 (-)
G395525 NA other upstream 236867 36301466 ~ 36301992 (-)
G395546 NA other upstream 349523 36414122 ~ 36414915 (-)
G395600 NA other upstream 382379 36446978 ~ 36447451 (-)
G396446 setd1b other upstream 1006407 37071006 ~ 37072124 (-)
G397094 NA other upstream 1539197 37603796 ~ 37606041 (-)

Expression

snx24(LOC106564872) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 25.
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snx24(LOC106564872) Expression in each Bioproject

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snx24(LOC106564872) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network