LOC110522860 (LOC106565786)


Basic Information

Item Value
gene id LOC110522860
gene name LOC106565786
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 39125473 ~ 39129083 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976521.1
CCTCCTGGTCTAAGAAGATGGAGGACATATGGGAACTTCAACTGACCACTACTCTTtacatgacctctgacctcttacTATCCACAAACCTCACCAACGTCACCAACTGCACCAACACCAACTCCAGCTGCACCGTCTCTAGCGTCAAGCTCTCGCCTTATTACCAACACTCCCTGACAATAGCAGCCAGCTACACCCTGGCCTACCTGTTCATCTTCCTGCTGTGCATGGTGGGTAATGGCCTGGTGTGCCTCATTGTTGTGAGGAACCGTCACATGCGGACGGTCACCAACCTCTTCATCTTCAATCTGGCTATCAGTGACCTGCTGGTTGGCATCTTCTGCATCCCCACCACGCTGGTGGACAACCTCATCACAGGTTGGCCCTTTAGCAATGCAGTGTGTAAGCTAAGTGGTCTGGTACAGGGGATATCAGTGGGTGCATCAGTATTCACCTTGGTTGCCATCGCTGTGGACAGATTCCGCTGTATTGTTTACCCCTTTAAGCCCAAGCTAACCCTTCTTGTTGCTAAGGCAACTATAGGGCTGGTATGGGCTCTTGCGTTGGTTATCATGCTTCCGTCGGCTGTGATGCTGATGGTGGAGCAAGAGGAGGGTCACTACATGGTATCCAGTGACAACCAGACCTACCCTCTCTACTACTGCTATGAGACCTGGCCTGACCCGGAAATGAGGAAGGTTTACACCATGGTCCTGTTCACACACATCTATCTGATGCCCCTGGCTCTCATCATGATAATGTATGGCTGCATTGGGGCCAAGCTCTACTCTACAGCTGTTCTGTCCAGTAGGGGGCACCCGGACGTCAAGTCCCCCATCTCCCAGAAGAAAGTCAAGGTGGTTAAGATGCTAATCGTGGTGGCCCTCCTCTTCATGCTGTCCTGGCTGCCTCTCTGGACCCTGATGCTCCTCACAGACTACGCCAGACCTGAAGGGGACCAGCTGGACCTTCTGACAGGCTACATCTTCCCTTTCTCCCACTGGCTGGCCTTCTCCAACTCCAGCATCAACCCCATCATCTATGGCTACTTCAATGAGAACTTCAAGAAGGGCTTCCAGGCTGCCTGTCACCCTAGATCATGTTGCAGCGTGGTCCCTCAGGAGCAGGTGGTGAGCAAGGCTCAGCGGAGGCACAATGCCAGAGCCCCCCGGAACACAGCCCTCAGTGCCAACCTTCTCACCACCCTGGGGGTGAGGAACCGCATCTACACCGACAGCGACCTGATGGGCTGCGTGTGTCTGGAGATggagcagaggaaggaggaaggctCTGCAGAGGCTCCTGGGCAGAGGGAAGTAACAGTAACGGTAGAGTGTCAATAAAAAGGGGTGTTCATGCAGAGGATGTGGATAGACTCTTTCCAATGGGGGTCGCTATGTGTCAGGTGTGGAAGCTTTGAAAGGCAGTTGGGTGGACATTAACAGTGGGGTGTGTATGCATGGTGAGGTTGGAAAATGGACATATTGGAGATAAGAGCGcaatagtgctgagcgattaaccgaaATGTAAGTTATTTTTAGTTTTCTTTCTATGAGCGTGATCTGCAGTTTCTCTGGAGATAACTCAGACCAAGCCAGAACTGCAGGGCTGGCtgtagccttttgggggccctaaatGAGATTTGGATGGGGGGTCCCCCCCAACAAGTGGCCACCAAGcgggatttttgttgttgttgtggtcctCTAGACATCGGAGATTtccaattttacacattttgccatgtggtaGAGAGGAAATGTGGCAATTATACAACAAATGTTATGCAATTCTACTAATTGTACCATGGGGcagagaaaaaacaaacattttataacacatttcatgcaattctacaaattttgccatggggcagggATAAACTTTTGCAGttctaaacattttgccatgCAATGGAGAGAAAATGGTGCAATTTTCttacacatttcatgcaattctactaattATGCAAGTTGGCGGAgagaaatgttgcagttttaaagataATTTACTTGAAAGAGCATGACAGAGCTTGCAATTCTACCAATCTTGTCATGGGATGGAGAGAAATGGTTGCAATTTTAAAGGGCAATTACGCCCCTTTTCAATCTCATATTCATCATCTtcagcaccaaaccagtgtctacatacactatatatacaaaaatatgtggacacccttcaaa
>TU452092
TAAGATGCTAATCGTGGTGGCCCTCCTCTTCATGCTGTCCTGGCTGCCTCTCTGGACCCTGATGCTCCTCACAGACTACGCCAGACCTGAAGGGGACCAGCTGGACCTTCTGACAGGCTACATCTTCCCTTTCTCCCACTGGCTGGCCTTCTCCAACTCCAGCATCAACCCCATCATCTATGGCTACTTCAATGAGAACTTCAAGAAGGGCTTCCAGGCTGCCTGTCACCCTAGATCATGTTGCAGCGTGGTCCCTCAGGAG

Function

NR:

description
PREDICTED: neuropeptide FF receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976521.1 False 2186 mRNA 0.49 3 39125473 39129083
TU452092 True 262 TUCP 0.55 1 39126535 39126796

Neighbor

gene id symbol gene type direction distance location
LOC110523771 LOC106563975 coding downstream 36220 39083292 ~ 39089253 (-)
LOC110523770 LOC106563948 coding downstream 42462 39067555 ~ 39083011 (-)
unc5c LOC106564027 coding downstream 257531 38683954 ~ 38867942 (-)
LOC110522859 LOC106581765 coding downstream 764968 38356415 ~ 38360505 (-)
gdnfa gdnf coding downstream 796401 38318608 ~ 38329072 (-)
LOC110522931 LOC106563315 coding upstream 5206 39134289 ~ 39148124 (-)
LOC110523772 LOC105025166 coding upstream 19482 39148565 ~ 39166813 (-)
zdhhc8a LOC106563940 coding upstream 42024 39171107 ~ 39189730 (-)
LOC110523774 LOC106563918 coding upstream 65628 39194711 ~ 39213888 (-)
LOC110523775 LOC106563887 coding upstream 85851 39214934 ~ 39265518 (-)
G398482 NA non-coding downstream 5013 39119522 ~ 39120460 (-)
G398483 NA non-coding downstream 6538 39118509 ~ 39118935 (-)
G398477 NA non-coding downstream 9433 39115639 ~ 39116040 (-)
G398474 NA non-coding downstream 10646 39114429 ~ 39114827 (-)
G398473 NA non-coding downstream 11165 39114079 ~ 39114308 (-)
G398508 NA non-coding upstream 9200 39138283 ~ 39138533 (-)
G398863 NA non-coding upstream 184055 39313138 ~ 39409334 (-)
G398852 NA non-coding upstream 189664 39318747 ~ 39320204 (-)
G398952 NA non-coding upstream 317752 39446835 ~ 39449245 (-)
G399006 NA non-coding upstream 379099 39508182 ~ 39508384 (-)
G398487 NA other downstream 314 39124485 ~ 39125159 (-)
G397500 cssa01h5orf42 other downstream 899953 38224981 ~ 38225520 (-)
G397378 NA other downstream 1055499 38066275 ~ 38069974 (-)
G397094 NA other downstream 1519432 37603796 ~ 37606041 (-)
G396446 setd1b other downstream 2053349 37071006 ~ 37072124 (-)
capslb LOC106563770 other upstream 394879 39522323 ~ 39525554 (-)
G399742 LOC106563559 other upstream 1065058 40194141 ~ 40201203 (-)
G399819 NA other upstream 1148935 40278018 ~ 40282951 (-)
G400909 hsp30 other upstream 1439124 40568207 ~ 40570604 (-)
G401044 NA other upstream 1726688 40855771 ~ 40858019 (-)

Expression

LOC110522860(LOC106565786) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
End of interactive chart.

LOC110522860(LOC106565786) Expression in each Bioproject

Bar chart with 13 bars.
LOC110522860(LOC106565786) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Co-expression Network