Gene
RNA
| Item | Value |
|---|---|
| gene id | mrps18c |
| gene name | mrps18c |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 39777911 ~ 39783326 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| mrps18c | Predicted to enable small ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS18C (mitochondrial ribosomal protein S18C). |
| description |
|---|
| 28S ribosomal protein S18c, mitochondrial isoform X2 |
| id | description |
|---|---|
| K02963 | RP-S18, MRPS18, rpsR; small subunit ribosomal protein S18 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021602815.2 | False | 540 | mRNA | 0.44 | 7 | 39777911 | 39782797 |
| XM_021602814.2 | True | 952 | mRNA | 0.44 | 7 | 39777911 | 39783326 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110523789 | gpat3 | coding | downstream | 4861 | 39762574 ~ 39773050 (-) |
| LOC110523784 | LOC106609062 | coding | downstream | 219670 | 39554978 ~ 39558241 (-) |
| lmbrd2b | LOC106563747 | coding | downstream | 228114 | 39529982 ~ 39549797 (-) |
| capslb | LOC106563770 | coding | downstream | 252357 | 39522323 ~ 39525554 (-) |
| trnal-uaa-2 | NA | coding | downstream | 312712 | 39465129 ~ 39465199 (-) |
| LOC110522936 | NA | coding | upstream | 25487 | 39808813 ~ 39813908 (-) |
| LOC110523797 | rxfp3 | coding | upstream | 147167 | 39930493 ~ 39932649 (-) |
| LOC110522937 | LOC105014731 | coding | upstream | 348774 | 40132100 ~ 40169848 (-) |
| LOC110523803 | LOC106563547 | coding | upstream | 432149 | 40215475 ~ 40230869 (-) |
| LOC110522939 | LOC106568256 | coding | upstream | 489612 | 40272938 ~ 40307876 (-) |
| G399080 | nkx6-1 | non-coding | downstream | 143230 | 39634200 ~ 39634681 (-) |
| G399079 | nkx6-1 | non-coding | downstream | 145329 | 39631714 ~ 39632582 (-) |
| G399066 | NA | non-coding | downstream | 150991 | 39626692 ~ 39626920 (-) |
| G398962 | LOC106563677 | non-coding | downstream | 153005 | 39617600 ~ 39624906 (-) |
| G399393 | NA | non-coding | upstream | 10470 | 39793796 ~ 39793997 (-) |
| G399404 | NA | non-coding | upstream | 37595 | 39820921 ~ 39822192 (-) |
| G399422 | NA | non-coding | upstream | 66719 | 39850045 ~ 39850864 (-) |
| G399468 | slc45a2 | non-coding | upstream | 131622 | 39914948 ~ 39920781 (-) |
| G399470 | slc45a2 | non-coding | upstream | 140868 | 39924194 ~ 39926264 (-) |
| LOC110522860 | LOC106565786 | other | downstream | 651115 | 39125473 ~ 39129083 (-) |
| G398487 | NA | other | downstream | 652752 | 39124485 ~ 39125159 (-) |
| G397500 | cssa01h5orf42 | other | downstream | 1552391 | 38224981 ~ 38225520 (-) |
| G397378 | NA | other | downstream | 1707937 | 38066275 ~ 38069974 (-) |
| G399742 | LOC106563559 | other | upstream | 410815 | 40194141 ~ 40201203 (-) |
| G399819 | NA | other | upstream | 494692 | 40278018 ~ 40282951 (-) |
| G400909 | hsp30 | other | upstream | 784881 | 40568207 ~ 40570604 (-) |
| G401044 | NA | other | upstream | 1072445 | 40855771 ~ 40858019 (-) |
| G401046 | NA | other | upstream | 1078806 | 40862132 ~ 40870205 (-) |
