LOC110523841 (LOC106562568)


Basic Information

Item Value
gene id LOC110523841
gene name LOC106562568
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 41411545 ~ 41414099 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602898.2
cactctccacatTGTTGGCACCGGAAGATCGTTTGCATCACCGCAAACAATAAAATCCCTGATTAAATGCAGGAGGTGCCTAGACAACACTATCAATATTGACTATTTTCAGAGAGGAGCAAAGCAGCACACAGACGGTCTCTCCTGTTAAAAGCGTATCGTTTGACCCATGGCAAACTTCACTACTACAGAAGATGACTGTTGCGCCTTTGAGTCTCCCATCCTGGACCATGTCCTGCCTCCCATCCTGGTTCTGGAGTTCATGTTTGGGCTGATGGGGAATGTTGTGGCTCTGTGGATGTTTATTTTCCTGGACACCTGGAAGCCCAACTCTGTCTACCTCACACAGCTGGCCGTTGCCGACTCCATAGTCCTGTTCTGTCTTCCATTCAGAGCCGACTACTACCGACGCGGCAAGCACTGGATCCATGGTGATGCCATGTGCCGGATTATGCTGTTCATGTTGACGGCCAACCGCGGCGCTGGCATCTTCTTCCTCACTGCAGTGGCTGTCGACCGTTACCTCAAGATCGTTCACCCCATGAACAAAATCAACCGGATGGGCCTGAATTATGCTCTGTGGGTGTCCCTGGGCCTGTGGGGGATGATCATCGCTGCAACCGGGTACCTGCTGACCAACAAACACTTATTCTACCGCAACAACCAGACACAGTGCGAGAGCTTCAACATCTGCATGGGCTTCAGCCCGCTGTCTACGTGGCACAACACCTTATACGTGACCCAGTTCTTCTTGCCCACCGCCATTGTCACCTTCTGCACGGTCTGCATCACCTGGCAGCTGAAGAACAAGACGATCGACACCGGGGGGAAGATCAAACGTGCGCTGCAGTTTGTCATGGCCGTGGCACTCATCTTCATAATTTGCTTCTTCCCCAGTACAGTGTCTCGGATCGCTGTGTGGATCCTCAAGGTCTGGTACAACGAGTGCCATTATTTCAAAGAGGCCAGTTTGGCGTTCTACACCTCTGTGTGTTTCACCTACTTCAACAGCGTGCTGAACCCCATCGTGTACTACTTCTCCAGCTCTGCCTTCAGTGGGAACTTCCAGAAGCTGTTCAACAGACTGctggggaggaaagaggaggaggtacCGCCAGCCTCGCCTGAGACTGGGACCGAGATCAGCAGTGCAAATACAGTGTCAGGGAGGAGTAGTAACTTCCAATCACAGGTCCAGGGTGAGGGTCTATactcacaaagcgtctcagactTATTCATTGTGATGTAAAatacaaaactgatcctagatcagcactcctaggCGTACTCTGAGACGCTTTTATGAAAAGGTACCCAGGAGAACAAAATATCTGACTGTGTGATTTTTCTTCTTCTACTCTAGTGGAATATGGTGTGTTCTAAAGAATATTAACCAGATGTGAAGGAAGTCAAGGAAGGTGGAGATAGTTGTCTGTTAGATACGaattttaacatttttatgttatGTTGATGTTCTATAGCTAAAAGTAGAAATTCATTAATTGGTTCGCTCAATTAAGAATTTGTTTGCAGTATAACAGTGGAATCTTtaatgtaatatgtcatatttaCAATCCTTTGTCTTTGAGTTTTGTGTATTTGCTGGTGATTCAAGTAAATTCCTTGTGAACTAGAAAAGTacatttcctaaagaaaatgtgtgtgcttgcTAGCTTGTCTTAAAGTATTTATGGTTGTGAAATAAGTTATAGTAGTGATAGTGACTGCAGTAGAAATGATATTGACTGGTTATAGTTGAAAAAGTAGGCAGATTTGATTATTTGATAGAataggatagcctgaacatgtgaAGTTGGTTCGGTGTCTCTAGCTTGAACAGTTACTATTAGTGTTGGTGGTTATTTTATACTAATGTTAGTTGTTTCAATGTTTGTAGCTGAAATTGTTAAAAAGCAGTAGCTTTTAAATTGTCTACCACTGTGTTCTTATGGTTGGCATTGAATACATGAAGTGTTATGCTAATTTATGCAAATCAAAATAGTTCATAAAAGGGTTATAGGAAATTTGACGTTAGGATAGCCTGAATGTTTTAAAGCTGTTGTAGCTTCATTGGTTTAGGAGCAGGACCGTTTTGAATAGCTACCACTGTATTACTATGTTTCTCATTTAAAACCATGTTAATTTATGCATATTTTTTATTGTTATAGTTCAAAAAGTATAGATAGGTGGAAAGATTGTTTTGATTGATAACACGAGAAAGTTAATTTAGTGTCTCTAGCTTTAACAGAAAGTTAATTTAGTGTCTCTAGCTTTAACAGTTCAAGAGTAAATATTACTGTTGGTGGGTTATGTTATGATAATGAAAAATTATTTAAATAGTTATAACGTATAAAGTAAAAATTGTTTAGTTGTTTCAATGTTTGTAGCTGAAATGGTGAAAGAGCAGTAGCATTTAAAATGTCTaccactgtgttgttgtttgactTTAAAAACATTACAGTTTATGCAAATGTAtgcaaattaaaataaattatatttgaTAAAAGTTTTAGAGAGCAGTTCTTCCACTGTCGGGAGAAATGGTAATGCATATT
>TU455192
CGTGGCACTCATCTTCATAATTTGCTTCTTCCCCAGTACAGTGTCTCGGATCGCTGTGTGGATCCTCAAGGTCTGGTACAACGAGTGCCATTATTTCAAAGAGGCCAGTTTGGCGTTCTACACCTCTGTGTGTTTCACCTACTTCAACAGCGTGCTGAACCCCATCGTGTACTACTTCTCCAGCTCTGCCTTCAGTGGGAACTTCCAGAAGCTGTTCAACAGACTGctggggaggaaagaggaggaggtacCGCCAGCCTCGCCTGAGACTGGGACCGAGATCAGCAGTGCAAATACAGTGTCAGGGAGGAGTAGTAACTTCCAATC
>TU455193
ACTGGATCCATGGTGATGCCATGTGCCGGATTATGCTGTTCATGTTGACGGCCAACCGCGGCGCTGGCATCTTCTTCCTCACTGCAGTGGCTGTCGACCGTTACCTCAAGATCGTTCACCCCATGAACAAAATCAACCGGATGGGCCTGAATTATGCTCTGTGGGTGTCCCTGGGCCTGTGGGGGATGATCATCGCTGCAACCGGGTACCTGCTGACCAACAAACACTTATTCTACCGCAACAACCAGACACAGTGCGAGAGCTTCAACATCTGCATGGGCTTCAGCCCGCTGTCTACGTGGCACAACACCTTATACGTGACCCAGTTCTTCTTGCCCACCGC

Function

NR:

description
hydroxycarboxylic acid receptor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602898.2 False 2555 mRNA 0.41 1 41411545 41414099
TU455192 False 327 lncRNA 0.52 1 41412912 41413238
TU455193 True 343 TUCP 0.55 1 41413338 41413680

Neighbor

gene id symbol gene type direction distance location
LOC110523839 LOC106561138 coding downstream 5753 41373889 ~ 41405792 (-)
LOC118964607 LOC106562583 coding downstream 55395 41354525 ~ 41356150 (-)
LOC118964606 NA coding downstream 57021 41349176 ~ 41354524 (-)
LOC110523838 LOC106562583 coding downstream 82385 41313261 ~ 41329160 (-)
LOC110523836 ptpn11 coding downstream 139918 41259817 ~ 41271627 (-)
LOC110523845 denr coding upstream 1089 41415188 ~ 41442012 (-)
LOC110522944 denr coding upstream 1169 41415268 ~ 41428011 (-)
LOC110523844 LOC106562568 coding upstream 16793 41430892 ~ 41434264 (-)
LOC110523849 LOC106562505 coding upstream 96741 41510840 ~ 41521485 (-)
LOC110523853 LOC106562392 coding upstream 275274 41689373 ~ 41708758 (-)
G401225 NA non-coding downstream 27335 41370923 ~ 41384210 (-)
G401231 NA non-coding downstream 106186 41305158 ~ 41305359 (-)
G401222 NA non-coding downstream 124496 41285306 ~ 41287049 (-)
G401089 NA non-coding downstream 439345 40971129 ~ 40972200 (-)
G401081 NA non-coding downstream 465279 40945966 ~ 40946266 (-)
G401271 NA non-coding upstream 174 41414273 ~ 41414482 (-)
G401272 NA non-coding upstream 498 41414597 ~ 41415048 (-)
G401274 NA non-coding upstream 2742 41416841 ~ 41417100 (-)
G401190 denr non-coding upstream 3018 41417117 ~ 41441989 (-)
G401300 NA non-coding upstream 58852 41472951 ~ 41474087 (-)
G401176 NA other downstream 215886 41194317 ~ 41195659 (-)
LOC110523832 LOC106561151 other downstream 304758 41105411 ~ 41207218 (-)
G401064 NA other downstream 508299 40901808 ~ 40903246 (-)
G401052 NA other downstream 534952 40875812 ~ 40876593 (-)
plac8.2 plac8 other upstream 619272 42033371 ~ 42035641 (-)
G403104 NA other upstream 2130588 43544687 ~ 43548274 (-)
G404357 NA other upstream 2959399 44373498 ~ 44373874 (-)
G404520 NA other upstream 3225702 44639801 ~ 44640045 (-)
LOC110523841 LOC106562568 other upstream 100 41411545 ~ 41414099 (-)

Expression


Co-expression Network