kcmf1 (yoy6)


Basic Information

Item Value
gene id kcmf1
gene name yoy6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 42775203 ~ 42794420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021602990.2
CGAATGCTCTGTCTCAGTACTTCTTCATGACAGACGGGGAGGGggaagcagagaactgtaagCTCAGTATCCATCTTAAAGAGAAAATAGGAAAGAGAAATCGCGTCCCAGGGTTATCCCTCAAAAACGGTATCTTTTCCTCCTGATCCGTGCTTGGGAGCCCCAGGAGGGGGCTGTGTCATCGTCTGTAGGATGTCCCGACATGAGGGTGTGAGCTGTGACGCGTGTTTAAAAGGGAACTTCAGAGGGCGCCGGTACAAGTGTTTAATTTGCTACGACTACGACCTGTGCGCGTCGTGCTACGAGAGCGGCGCCACCACAACGAGACACACGACAGAACACGCCATGCAGTGTATATTAACCAGGGTAGACTTTGACCTGTATTACGGCGGTGAGGCGTTCTCAGTAGAGCAGCCCCAGAGCTTTTCTTGTCCTTACTGTGGTAAAATGGGATACACAGAGACATCCCTACAGGAGCATGTCGCCTCCGAGCATACAGAGACCTCCACAGAGGTGATCTGTCCAATATGTGCTGCGTTGCCGGGCGGGGACCCCAATCATGTGACCGACGACTTTGCTGCTCATCTCACACTTGAACACAGAGCACCTAGAGATTTAGATGAGTCCAGCGGCGTCCGGCACGTGCGTCGGATGTTCCACCCCGGTCGCGGGCTGGGCGGTCCCAGGGCACGCAGGACCAACATGCACTTTACTAGCAGCTCCACCGGGGGGCTCTCCTCCTCACAGAGCTCCTCGTACTCACCCAGTAACAGGGAAGCCATGGACCCCATAGCAGAGCTGTTGTCTCAGCTGTCGGGCGTGCGGCGCTCTGCGGGCGGCCAGCTCAACTCGTCGGGCCCGTCCGCATCTCAGCTGCAGCAGTTACAGATGCAGTTGCAGCTGGAGCGCCAGCAGGCCCAAGCGGCCCGGCAACAGCTGGAGACGGCCAGGAACACCACGCGACGCTCCAACCCCGGCGGCAACATCGGCGCCACCATCCCCCCGCCCAGCGCCGTCGCCAACTCGGCCGGCGTGGCCGAGAGCAACCCCATGGCCTCCCACAGCTCCCAGTTCCTGCTCACACGGTTAAACGAGCCCAAGATGTCGGAGGCGGAGCGGCAGGTGCTGGAGGGCGAGCGCGCCGACCGCAGCCTGTTCGTTCAGGAGCTGCTGCTGAGCACGCTAATGCGCGAGGAGAGCTCTTCCTCGGACGAGGACGAGCGGCGAGATTTCGCCAGCTTTGGGGCCATGGGCTGCGTGGATATCATGCCTTTAGACGTGGCCCTGGAGAATCTCAACCTCAAGGAGAGCGGTACAGGCAGCTACGGCAGCAGCTCGAGGAGCTCTAAGGAGCCTCCACCGCCTCCTCTTTGATGATATCCCAGCACCACGCAGACTTTGTCCTCTGTGCTGCCACTGCCAGTGATGGGCGGGCGGTGCAGCAGGCTGTATTTTGGTTTGTTTTTTGGTGATTGTAATTTCAGGTCTGTCACCTTTGTTACATTGTGTACAACCATAAAAAAGGAGAACGGGAGCGATTGGGGAAAGTGCAAGTGGATGAGTGCGCAGCGCCGAGCGAGCGATgaagataaaataaatatataaatatatattaaaaagttGATAATCACATAATTTTTCTTTAGCAGGTCAGCATTAGGTAGCCGTGGCAGACCTCTGCTTCCTGTTCTCATGCAAAAGGCTCCTTTATAAATACTCCACATTCAAAAACTGAAGAGGAATCAGACACCCTCTGATGAAGCTGCTGTGTGTATTTATGACTTAACTAATAAAGTGCTTGAATGGTTTACCATAACTACTGCATGAGGTTCTTTGCAGCGTGCATGACTTTTAATGACCTTATCGTCATTAAAAAGctcaaaaaattaaataaatcccCATGCTTTTTTATCTTCCACCATTTTAAAAGGGTTACATGATTTGAGTTTTTCTGAAAAATTGAATATCACCCATAAAAAACTGACACACTGAAAAGTTTAGGAACTTTTACAactttttaacatttttaatAGAAAAAAGCAACCTATTGGAATCTGTTGTAGCTTTTAAAAAGAAAACAATGCAATGTGTTTGTCTCTCAGCTCCGGTTTGTCCTTCCCTCTCTGTGACACCATCGTCTGTATATAACAACTTGCGGCACTAATGTCAACTCAAGACGTCTGCGTCTACTTAGCAGATGATAAAATAATACAGTACTAGGAGCAGAAAAACAAGATCTTGCCTCTGACATTTTTCCTAGATGTTGATGTTTTAGTGATAAGCAGTGTGTAACTACCAGATGTAGTTTCTAATTTATGCACCTGTACAGAAGAACTAGTCTCTCCCATTATCATCAATCGCACTcaactctgctcctctctctgattCTGTAGGCCCAGACTCCCTCCCTGCATTCAGTTGTATTTCTTCTCTTTGTTGAGGAAGGGGAGCTCGGGACTCCACATTGCAGCCATTGTTTTTTGTACGACTTACGTTCAGATTTAGTTTTTCAGCTGAAGATAGCACCTTCTATTTATtcccttttttctttttttctctgattCTTTAAAGCCTTGTAATGAATCATGCCACCTCCATGCCTATACTCTTATACTCTATGTAAAATACAATGAGATGTATATTGAATTTGTGCGTTAACTTTCATAATGGTTCTAGGACATGggcagacttttttttttttcttttttttttaatgtaaatttAGAATACTACAATAAACTGCGCACAGCTTTTGATGAAACGAA

Function

NR:

description
ZK652.6

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K22376 KCMF1, FIGC; E3 ubiquitin-protein ligase KCMF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021602990.2 True 2765 mRNA 0.49 7 42775203 42794420

Neighbor

gene id symbol gene type direction distance location
camk4 camk4 coding upstream 678 42750037 ~ 42774525 (+)
wdr36 wdr36 coding upstream 27894 42731911 ~ 42747309 (+)
LOC110523880 LOC106562119 coding upstream 48401 42719394 ~ 42726802 (+)
LOC110523878 man2a1 coding upstream 71832 42625327 ~ 42703371 (+)
fer fer coding upstream 160986 42578750 ~ 42614217 (+)
hnrpkl LOC106562047 coding downstream 47714 42842134 ~ 42853080 (+)
gna11 NA coding downstream 60529 42854949 ~ 42856031 (+)
LOC110523886 LOC106562041 coding downstream 67917 42862337 ~ 42875692 (+)
LOC110523887 bmcc1 coding downstream 85701 42880121 ~ 42890648 (+)
LOC118964610 NA coding downstream 131039 42925459 ~ 42929598 (+)
G402143 NA non-coding upstream 26449 42747683 ~ 42748754 (+)
G402142 NA non-coding upstream 32834 42741459 ~ 42742369 (+)
G402139 NA non-coding upstream 45515 42729416 ~ 42729688 (+)
G402135 NA non-coding upstream 57506 42717140 ~ 42717697 (+)
G402132 NA non-coding upstream 62826 42712170 ~ 42712377 (+)
G402176 NA non-coding downstream 5247 42799667 ~ 42799866 (+)
G402156 NA non-coding downstream 8376 42802796 ~ 42813354 (+)
G402263 LOC106562020 non-coding downstream 176044 42970464 ~ 42974534 (+)
G402304 NA non-coding downstream 247037 43041457 ~ 43043038 (+)
G402133 NA other upstream 59412 42714873 ~ 42715791 (+)
G401605 NA other upstream 693883 42065749 ~ 42081320 (+)
G401607 NA other upstream 706159 42060132 ~ 42069044 (+)
G400759 NA other upstream 739597 42033881 ~ 42035606 (+)
G400681 NA other upstream 818109 41952623 ~ 41957094 (+)
G402305 NA other downstream 301782 43042605 ~ 43245654 (+)
LOC110523907 LOC105026675 other downstream 1502517 44296870 ~ 44301434 (+)
G404248 NA other downstream 1796192 44590612 ~ 44606497 (+)
LOC110523937 LOC106605670 other downstream 2773180 45567600 ~ 45571386 (+)
mlana mlana other downstream 3670596 46449922 ~ 46468147 (+)

Expression

kcmf1(yoy6) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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kcmf1(yoy6) Expression in each Bioproject

Bar chart with 21 bars.
kcmf1(yoy6) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network