LOC110523893 (LOC106561951)


Basic Information

Item Value
gene id LOC110523893
gene name LOC106561951
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 43190710 ~ 43225540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977609.1
TCCCCTTTCAGCCAATCACAAGCCAGCCCCCACCACTATAGGACATATAGCTAGCTGGCTGTATAAAGTGTTGTGGCTTGTTCACTGActacacaacaacagcagcagcagaaatCATCACCCTGCTACTGCAAATTGACGGGGAAAActgttTGACCATGATGTCCCTGTACTTGGCAGTGTTGGTGCTCTGTATGAGTGCTGTGTATGCGGCGCCTATGTTTGACTCTCAGTTGGAGGGCCACTGGCACTTGTGGAAGAACTGGTACAGCAAGAACTACCATGAGAGCGAGGAGGGCTGGAGGAGGATGGTTTGGGAAAAGAACCTGAAGAAGATTGAGATGCATAACCTGGACCATTCTATGGGAAAACACTCCTACCGTCTGGGCATGAACCACTTTGGTGACATGACCAACGAAGAGTTCGGGCAGCTCATGAACGGCTACAAGCAGACAACCGAGAGGAAGTACAAGGGCTCTCTGTTCATGGAGCCCAACTACCTGCAGGCCCCTAAAGCTGTGGACTGGAGAGAGAAGGGCTACGTCACTCCCGTCATGGACCAGGGCTCATGTGGGTCTTGCTGGGCGTTCAGTTCCACCGGTGCCTTAGAGGGCCAGCTATTCAAGAAGACTGGCAATCTGGTGTCTCTGAGTAAACAGAACCTGGTGGACTGCTCCAGACCCCAGGGCAACGATGGCTGTATTGGAGGTCTCATGGACCGGGCGTTCCAGTATGTAATGGACAACGGCGGCCTGGACACCGAGGCGTCCTACCCCTATGTGGGCAAGGAGGATTACTTTTGCCACTACCGACCAGAGTTCAGTGCCGTCAATGAAACCGGCTTCGTGGACATCCCCAGTGGCAAGGAGCACACTCTGATGAAGGCTGTGGCGTCTGTCGGCCCCGTCTCTGTCGCCATCGATGCCAGCCACGAATCCTTCCAGTTCTACCAGTCTGGGCTCTATTATGAGGAGAAGTGCAGCAGTGAGGAGCTTGACCATGGAGTTCTGGTGGTGGGATACGGTTTTGAAGGAGAGGATGTAGATGGCAAGAAATTCTGGATTGTCAAGAACAGCTGGAGTGATAAGTGGGGAGACAAAGGCTACATCTACATGGCCAAAGACAGGAAGAACCACTGTGGCATCGCCACGGCAGCCAGCTACCCACTGGTCTAGTGTTCTGTAAGTTCTCGAACACTAGACCCAGAGgtttagttttagagatgtttgaCGAACGTTCTGAAAAAAAGGGCAATGAGGACTGCAGTGCTGCTTTAACTAAGTCTGTGAAATGCGCGAGAGAAACCTGCTGCATGGGTTTTAAAGAAACGCTGTTTTAGGGAAATTATGAAAATTCTACCTATTTTGTTTTATACTtgattttatgtgtgtgtgtagttctatTTGAGTTAAGCATTCCGTTTATTTGTAACTTTACTTGATGAGACCAGCTAGACTACATTCTCTAGCACATGTCAGTTTGTGCTTACTGTTTGTGTTTACAACATTGTTGTAGACACAGGAGATATATATTCCTGAGGTACAGTTGATATACCGTCTATTTTTAACTGCCGCGTTCTCTGTGGAGCTGAGAGCAACAACCACTGAATGATAAGACATTGAGGAAGACTAGAGCTCTGAAATGACTGAGTTTGTTTCTGAAAGTGAGGGACAAAAAGAGAACGGTACACCTGGGTTTGTTTCCTCCACTGCTTTTTTTATCTGCAGCTAGTGTTTGAGTAAAGGTGTTGAATGGTAATGTCTAGACAAGAGCCTAGTGATGCAGAGACTGATATGCCTCCGGGTGGTGAGAGGAGATGTATaacattctaacacacacatgTAGATGAGTTCAAATTGtgtttaataataataaactaCATTCATCAA
>XM_021603009.2
TCCCCTTTCAGCCAATCACAAGCCAGCCCCCACCACTATAGGACATATAGCTAGCTGGCTGTATAAAGTGTTGTGGCTTGTTCACTGActacacaacaacagcagcagcagaaatCATCACCCTGCTACTGCAAATTGACGGGGAAAActgttTGACCATGATGTCCCTGTACTTGGCAGTGTTGGTGCTCTGTATGAGTGCTGTGTATGCGGCGCCTATGTTTGACTCTCAGTTGGAGGGCCACTGGCACTTGTGGAAGAACTGGTACAGCAAGAACTACCATGAGAGCGAGGAGGGCTGGAGGAGGATGGTTTGGGAAAAGAACCTGAAGAAGATTGAGATGCATAACCTGGACCATTCTATGGGAAAACACTCCTACCGTCTGGGCATGAACCACTTTGGTGACATGACCAACGAAGAGTTCGGGCAGCTCATGAACGGCTACAAGCAGACAACCGAGAGGAAGTACAAGGGCTCTCTGTTCATGGAGCCCAACTACCTGCAGGCCCCTAAAGCTGTGGACTGGAGAGAGAAGGGCTACGTCACTCCCGTCATGGACCAGGGCTCATGTGGGTCTTGCTGGGCGTTCAGTTCCACCGGTGCCTTAGAGGGCCAGCTATTCAAGAAGACTGGCAATCTGGTGTCTCTGAGTAAACAGAACCTGGTGGACTGCTCCAGACCCCAGGGCAACGATGGCTGTATTGGAGGTCTCATGGACCGGGCGTTCCAGTATGTAATGGACAACGGCGGCCTGGACACCGAGGCGTCCTACCCCTATGTGGGCAAGGAGGATTACTTTTGCCACTACCGACCAGAGTTCAGTGCCGTCAATGAAACCGGCTTCGTGGACATCCCCAGTGGCAAGGAGCACACTCTGATGAAGGCTGTGGCGTCTGTCGGCCCCGTCTCTGTCGCCATCGATGCCAGCCACGAATCCTTCCAGTTCTACCAGTCTGGGCTCTATTATGAGGAGAAGTGCAGCAGTGAGGAGCTTGACCATGGAGTTCTGGTGGTGGGATACGGTTTTGAAGGAGAGGATGTAGATGGCAAGAAATTCTGGATTGTCAAGAACAGCTGGAGTGATAAGTGGGGAGACAAAGGCTACATCTACATGGCCAAAGACAGGAAGAACCACTGTGGCATCGCCACGGCAGCCAGCTACCCACTGGTCTAGTGTTCTACAACCTGAAGGTTCTAGTACACTAGACCTTAGTTTTAGAAACATTTGATGAAAGATCTGGAAAACGGGTCATGGTTACAGTGCTGCCTTAATTAAATACATCCGTGAAAGGTGCATGAGAACCTGCTGCTTGGGTTTTAAAGAAGCACATTTAAGGAATTTATGAAATTCTACCCATttttgttttatacatttttatgtcTATGCATCTTGAGCCAAGTGAATGTTACAGGTGTAACCTGTGTACATTCCTCATTTTCTGCTTTTACAACTGTTTTGTACATCagcaaaataaacatttttaaaattgA

Function

NR:

description
cathepsin L1-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01365 CTSL; cathepsin L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977609.1 False 1889 mRNA 0.48 9 43190710 43225540
XM_021603009.2 True 1492 mRNA 0.49 8 43219720 43225540

Neighbor

gene id symbol gene type direction distance location
LOC110515925 LOC106561951 coding downstream 33216 43152474 ~ 43157494 (-)
LOC110523894 LOC106561951 coding downstream 61406 43124311 ~ 43129304 (-)
LOC110519245 LOC106561975 coding downstream 89580 43096346 ~ 43101130 (-)
LOC110523888 LOC106562020 coding downstream 208542 42934303 ~ 42982168 (-)
pcsk5a LOC106562014 coding downstream 264823 42890853 ~ 42925887 (-)
LOC110523896 LOC106561975 coding upstream 18041 43243581 ~ 43248041 (-)
LOC110523902 epb41l4a coding upstream 164052 43389592 ~ 43474592 (-)
LOC110523906 LOC106561104 coding upstream 574547 43800087 ~ 43997360 (-)
LOC110523908 LOC106561873 coding upstream 1104387 44329927 ~ 44368798 (-)
LOC110523915 NA coding upstream 1237118 44462658 ~ 44466770 (-)
G402873 NA non-coding downstream 46314 43115984 ~ 43144396 (-)
G402872 NA non-coding downstream 46629 43115653 ~ 43144081 (-)
G402840 NA non-coding downstream 130733 43058790 ~ 43059977 (-)
G402761 NA non-coding downstream 171278 42982928 ~ 43019432 (-)
G402706 NA non-coding downstream 267919 42860228 ~ 42922791 (-)
G402943 NA non-coding upstream 73826 43299366 ~ 43299572 (-)
G402867 NA non-coding upstream 78790 43304330 ~ 43304564 (-)
G402955 NA non-coding upstream 83464 43309004 ~ 43309294 (-)
G402963 NA non-coding upstream 94788 43320328 ~ 43320603 (-)
G402964 NA non-coding upstream 95787 43321327 ~ 43321531 (-)
plac8.2 plac8 other downstream 1155069 42033371 ~ 42035641 (-)
G401190 denr other downstream 1748721 41417117 ~ 41441989 (-)
LOC110523841 LOC106562568 other downstream 1777030 41411545 ~ 41414099 (-)
LOC110523839 LOC106561138 other downstream 1784931 41373889 ~ 41405792 (-)
G401176 NA other downstream 1995051 41194317 ~ 41195659 (-)
G403104 NA other upstream 319147 43544687 ~ 43548274 (-)
G404357 NA other upstream 1147958 44373498 ~ 44373874 (-)
G404520 NA other upstream 1414261 44639801 ~ 44640045 (-)
G404649 NA other upstream 1536075 44761615 ~ 44762033 (-)
G404935 LOC106561730 other upstream 1772696 44998236 ~ 44998709 (-)

Expression

LOC110523893(LOC106561951) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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LOC110523893(LOC106561951) Expression in each Bioproject

Bar chart with 18 bars.
LOC110523893(LOC106561951) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3000.
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Co-expression Network