LOC110523908 (LOC106561873)


Basic Information

Item Value
gene id LOC110523908
gene name LOC106561873
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 44329927 ~ 44368798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603046.2
CTCTCTAAAATTCAATCGCATAGTGCGCTGTCCTCGGCACAGAGAGAGATTCGAGAGGACGTGTGCAATATCCATTTTGTACATTTGCCGGTGTTGTCAATTCGGTTTGGGCTACTGGGTTATAAACACGTCATTTAATAACCGCTAGCCTTTCAAGGCTAAATCAGAAGGCATCCTGGACGAAACGGGTGCACCGAAGATCCCTACGCAGCATGGATTCTATGTAACTCCGGTAAAATGTAATGAGGAGATGGCTCCGGGAGAGAAAGATCATCAGGGTACCAGCCGAATAGTGTTGGTCAAGAAAATTATCATGAAAGATGGGCCCACGCCGGGCCAGGGTATTGGCAGACCCAGTGTTTCCCATGCTGTGGTGGTCATCTTCCTGGAGTTCTTTGCCTGGGGTCTCCTTACCACTCCAATGCTGACAGTTTTACATGAAACTTTTCCACAGCACACGTTTCTGATGAATGGTCTCATTCAAGGGGTGAAGggtcttctgTCCTTCATGAGCGCCCCTCTGATTGGTGCCTTGTCAGACGTGTGGGGCAGACGGTCCTTCCTATTGGTCACTGTGTTCTTCACCTGCGCCCCCATCCCGCTTATGAGACTCAGTCCCTGGTGGTACTTTGCAGCGATTTCCATGTCAGGGGCTTTCTCTGTCACCTTCTCTGTCATCTTCGCTTATGTCGCTGATGTCACGGAGGAGCATGAGAGAAGCACCGCATACGGATTGGTATCGGCTACGTTTGCTGCCAGCCTGGTGACGAGTCCAGCCATCGGGGCGTACCTGTCCGCGTGTTACGGTGACAACCTGGTGGTGTTGGTGGCTACACTGGTTGCTCTGGCAGACATCTGTTTCATCCTGCTGGCCGTGCCAGAGTCCCTCCCGGAGAAGATGAGGCTCAACACCTGGGGTGCACCCATCACCTGGGAGCAGGCCGACCCCTTCCAGTCGATGAGGAAAGTGGGGAAGGATCCCACGGTTCTTCTCATCTGTATAACCGTGTTCCTATCCTACCTACCCGAAGCTGGCCAATACTCCAGCTTTTTTCTCTACCTTAGACAGGTCATTAACTTCTCATCGGCAACGATTGCGGTGTTCATCGGGGTGGTTGGAATCCTCTCCATCATAGCCCAGACACTTATCCTGACAGTCTTGATGAGAACGATCGGGAACAAGAACACAGTTCTACTGGGGCTGGGCTTCCAGATTCTACAGCTGGCCTGGTACGGTTTTGGGTCAGAGCCATGGATGATGTGGGCTGCGGGTGCAGTAGCAGCCATGTCTAGTATCACCTTTCCTGCAGTGAGCGCCCTGGTGTCTCACAGCGCAGACCCAGATAAGCAGGGTCTGGTGCAAGGAATGATCACTGGTATCCGGGGCCTGTGTAACGGTCTGGGCCCAGCGCTGTATGGCCTTATCTTCTTCATGTTCAACGTAGAGCTGAACACCGTTGACCCCATCCAGGGAGAATACCCCATCGACCCTATACCTATAAACCCACCGGCTGAGaaatCATTGATCCCCGGCCCTCCCTTCCTCCTGGGCTCGTGCACGGTTGTCGTGGCGTTCCTGGTAGCCTTGTTTATCCCCGAACACACTGAGCCTCCAGTTGTGACCTGCGCCGATTCCAAGGAAACCTCCACGCTCGCTGGCGTCCACATCAACACCCCGTTGCCGGGCAGCGACGAGGACACGCAGGTGCCGACCAGCGACGAGGACTTTGAGCCCCTGCTGCAGGACAGCATTGTGTGACTGAGGGCGGGCAGCAGGCGGCTTTGGTATTGTTACACCCAGCTATGGGAACTACCCCAACACGCCAATTATGTAGCCTATCTATCCccaatggaggaggaggagagagagagaaaggggcaaTAGGGATGGGACAGGGGCCTAGCTAACCTAACTCAATTTTGTGTGCAACTCTGCACTGCACAACCAACCATTAATTCCCTGGTCTTCGCCCCTGTCTCCGCCCTTACCCAATAGGAACtagtaattatttatttatttaagagGATTTGATAAACTGTTTATGATGTTGTGATCTTTTGGGGGATGGTTACCCCAGTGTTTTTAGTTTTTCACCTATAGGACTCTGGACCTTGTTTTTGCTGCAAGAGTCTGAAAGGAGACATAGCGGAGATAGTGGATCCTGCGGGCAAAACTGGTTACTGGTTGTAATCTGGTTGTAATGATGCCATTTCAACCAGCTTTGCCCGCTGGGGAGATTgagcgtttttttttttatttttttttttatagcacTATGTTTAATGGAGGTAGAACAGAAAGAGCTTGCTGTGCCCTGCATTTTATTGCTTCAACGCATTTTCAAACTCCGCTGCGCATCATTTCGATTACAAGAAGGAGAACTGTGCCAGTAGTCAACAACACTTAACATATTTACTTTAGAAGACTGTTCATAGAGGAACTCTGTCACTATGAGCAGTCGTACGATTATGGCATAATAAAAGGGCTCAGATATTAGTCCGACATTTCCATGGGATCTTCTGTTCACAAGCCTTACAACAACTCACATTTTTTTCAGAGAGCACTTATCATATCATTGTCTTATAAGGGGTAGGGAGACATGGGGGATTAGGATGGTAGAGTAGTTGGCATAGGAAGATGAGATCTTGATGTAATTTTTTTACTCCCAAGATCTCATCTCACACTTTATTGTGCAGAGTTTTGGTACTTGAACCACCGCTCCTAGAGAAACTGCTAAAAGTGTTACTGTATGGTGAGAACATGGAACTACAGTATGTTGAGGCAGAATTGAGGTGTTTAATGATGCCATAATTGTTGCTGAGCGTTATGGTTTCATGCAGTGCCCTGCGGTTTCTGTTCAGTCTGTGAAATCTTGATTGTTACtgtataaaaaaaaagttttttatcttgaagaatataatttataagATGTATTTATGATGTATTTTATTGATATTATACATCAGGGCTGGGGGCAATTCCAGTCAATTTAGAAAGTATTCCACattttcctcattgaaaagcattgaagagaattggaattcgAGTTTGAATTTTAGTGTATTTCCTGAATTGACCCAACCCTGTTATCCATGCTGTAAAAATAATATTGCTAACATTCTGCAACATATTGACTGAAATGTCTAGGCTACTTTGGTAgtaaaaatatattatattcaaCTTTGAGTGAGACACATTTttactggttttctttttgtaattttTGGGAGGATTCTTCATGGTCTTTTAAGTATAACCTTACTCTGAAGTATATTATAGGGGTGGATATAAGGTGAGGTTTCCTTTTTTTATTTGGATGACAAAATCATGAATTTCAATCATTGTTTTTTTCCTTCAATAAATATGTCCAAGTGTTACTAGCTAA
>XM_036977629.1
gtcgaTGCGGTCCTATACGGAGCCCTCCGCATAGTTCGGAAGGGCAAGGCGATGCGGTACAGAGTTTGTCTTGCCTCTGCATGACTACGCAATTGCGTCACGCCCTCCATACTAAGCCTCCGACTACATTTTCGGATCAAGCCTAAATTGACTTTAAGCGGGATATGAGCTACTATCAGGAATACTGTGCGCATGTAAACGTGGTCATGGTCTTGAAATGCCGGGCCAGGGTATTGGCAGACCCAGTGTTTCCCATGCTGTGGTGGTCATCTTCCTGGAGTTCTTTGCCTGGGGTCTCCTTACCACTCCAATGCTGACAGTTTTACATGAAACTTTTCCACAGCACACGTTTCTGATGAATGGTCTCATTCAAGGGGTGAAGggtcttctgTCCTTCATGAGCGCCCCTCTGATTGGTGCCTTGTCAGACGTGTGGGGCAGACGGTCCTTCCTATTGGTCACTGTGTTCTTCACCTGCGCCCCCATCCCGCTTATGAGACTCAGTCCCTGGTGGTACTTTGCAGCGATTTCCATGTCAGGGGCTTTCTCTGTCACCTTCTCTGTCATCTTCGCTTATGTCGCTGATGTCACGGAGGAGCATGAGAGAAGCACCGCATACGGATTGGTATCGGCTACGTTTGCTGCCAGCCTGGTGACGAGTCCAGCCATCGGGGCGTACCTGTCCGCGTGTTACGGTGACAACCTGGTGGTGTTGGTGGCTACACTGGTTGCTCTGGCAGACATCTGTTTCATCCTGCTGGCCGTGCCAGAGTCCCTCCCGGAGAAGATGAGGCTCAACACCTGGGGTGCACCCATCACCTGGGAGCAGGCCGACCCCTTCCAGTCGATGAGGAAAGTGGGGAAGGATCCCACGGTTCTTCTCATCTGTATAACCGTGTTCCTATCCTACCTACCCGAAGCTGGCCAATACTCCAGCTTTTTTCTCTACCTTAGACAGGTCATTAACTTCTCATCGGCAACGATTGCGGTGTTCATCGGGGTGGTTGGAATCCTCTCCATCATAGCCCAGACACTTATCCTGACAGTCTTGATGAGAACGATCGGGAACAAGAACACAGTTCTACTGGGGCTGGGCTTCCAGATTCTACAGCTGGCCTGGTACGGTTTTGGGTCAGAGCCATGGATGATGTGGGCTGCGGGTGCAGTAGCAGCCATGTCTAGTATCACCTTTCCTGCAGTGAGCGCCCTGGTGTCTCACAGCGCAGACCCAGATAAGCAGGGTCTGGTGCAAGGAATGATCACTGGTATCCGGGGCCTGTGTAACGGTCTGGGCCCAGCGCTGTATGGCCTTATCTTCTTCATGTTCAACGTAGAGCTGAACACCGTTGACCCCATCCAGGGAGAATACCCCATCGACCCTATACCTATAAACCCACCGGCTGAGaaatCATTGATCCCCGGCCCTCCCTTCCTCCTGGGCTCGTGCACGGTTGTCGTGGCGTTCCTGGTAGCCTTGTTTATCCCCGAACACACTGAGCCTCCAGTTGTGACCTGCGCCGATTCCAAGGAAACCTCCACGCTCGCTGGCGTCCACATCAACACCCCGTTGCCGGGCAGCGACGAGGACACGCAGGTGCCGACCAGCGACGAGGACTTTGAGCCCCTGCTGCAGGACAGCATTGTGTGACTGAGGGCGGGCAGCAGGCGGCTTTGGTATTGTTACACCCAGCTATGGGAACTACCCCAACACGCCAATTATGTAGCCTATCTATCCccaatggaggaggaggagagagagagaaaggggcaaTAGGGATGGGACAGGGGCCTAGCTAACCTAACTCAATTTTGTGTGCAACTCTGCACTGCACAACCAACCATTAATTCCCTGGTCTTCGCCCCTGTCTCCGCCCTTACCCAATAGGAACtagtaattatttatttatttaagagGATTTGATAAACTGTTTATGATGTTGTGATCTTTTGGGGGATGGTTACCCCAGTGTTTTTAGTTTTTCACCTATAGGACTCTGGACCTTGTTTTTGCTGCAAGAGTCTGAAAGGAGACATAGCGGAGATAGTGGATCCTGCGGGCAAAACTGGTTACTGGTTGTAATCTGGTTGTAATGATGCCATTTCAACCAGCTTTGCCCGCTGGGGAGATTgagcgtttttttttttatttttttttttatagcacTATGTTTAATGGAGGTAGAACAGAAAGAGCTTGCTGTGCCCTGCATTTTATTGCTTCAACGCATTTTCAAACTCCGCTGCGCATCATTTCGATTACAAGAAGGAGAACTGTGCCAGTAGTCAACAACACTTAACATATTTACTTTAGAAGACTGTTCATAGAGGAACTCTGTCACTATGAGCAGTCGTACGATTATGGCATAATAAAAGGGCTCAGATATTAGTCCGACATTTCCATGGGATCTTCTGTTCACAAGCCTTACAACAACTCACATTTTTTTCAGAGAGCACTTATCATATCATTGTCTTATAAGGGGTAGGGAGACATGGGGGATTAGGATGGTAGAGTAGTTGGCATAGGAAGATGAGATCTTGATGTAATTTTTTTACTCCCAAGATCTCATCTCACACTTTATTGTGCAGAGTTTTGGTACTTGAACCACCGCTCCTAGAGAAACTGCTAAAAGTGTTACTGTATGGTGAGAACATGGAACTACAGTATGTTGAGGCAGAATTGAGGTGTTTAATGATGCCATAATTGTTGCTGAGCGTTATGGTTTCATGCAGTGCCCTGCGGTTTCTGTTCAGTCTGTGAAATCTTGATTGTTACtgtataaaaaaaaagttttttatcttgaagaatataatttataagATGTATTTATGATGTATTTTATTGATATTATACATCAGGGCTGGGGGCAATTCCAGTCAATTTAGAAAGTATTCCACattttcctcattgaaaagcattgaagagaattggaattcgAGTTTGAATTTTAGTGTATTTCCTGAATTGACCCAACCCTGTTATCCATGCTGTAAAAATAATATTGCTAACATTCTGCAACATATTGACTGAAATGTCTAGGCTACTTTGGTAgtaaaaatatattatattcaaCTTTGAGTGAGACACATTTttactggttttctttttgtaattttTGGGAGGATTCTTCATGGTCTTTTAAGTATAACCTTACTCTGAAGTATATTATAGGGGTGGATATAAGGTGAGGTTTCCTTTTTTTATTTGGATGACAAAATCATGAATTTCAATCATTGTTTTTTTCCTTCAATAAATATGTCCAAGTGTTACTAGCTAA

Function

NR:

description
hippocampus abundant transcript 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603046.2 False 3386 mRNA 0.46 12 44329927 44353902
XM_036977629.1 True 3275 mRNA 0.47 12 44329927 44368798

Neighbor

gene id symbol gene type direction distance location
LOC110523906 LOC106561104 coding downstream 332567 43800087 ~ 43997360 (-)
LOC110523902 epb41l4a coding downstream 855335 43389592 ~ 43474592 (-)
LOC110523896 LOC106561975 coding downstream 1081886 43243581 ~ 43248041 (-)
LOC110523893 LOC106561951 coding downstream 1104387 43190710 ~ 43225540 (-)
LOC110522950 LOC106561975 coding downstream 1134972 43190710 ~ 43194955 (-)
LOC110523915 NA coding upstream 93860 44462658 ~ 44466770 (-)
LOC110523912 LOC100380870 coding upstream 131953 44500751 ~ 44551782 (-)
LOC118964775 NA coding upstream 174815 44543613 ~ 44543741 (-)
LOC110523916 ppip2 coding upstream 205535 44574333 ~ 44590062 (-)
tcp4 NA coding upstream 221835 44590633 ~ 44606484 (-)
G404299 NA non-coding downstream 2277 44325754 ~ 44327650 (-)
G404323 NA non-coding downstream 36962 44288124 ~ 44292965 (-)
G404082 NA non-coding downstream 62105 44267519 ~ 44267822 (-)
G404071 NA non-coding downstream 71227 44258432 ~ 44258700 (-)
G404051 NA non-coding downstream 83553 44246073 ~ 44246374 (-)
G404358 NA non-coding upstream 6458 44375256 ~ 44375539 (-)
G404359 NA non-coding upstream 7753 44376551 ~ 44376780 (-)
G404360 NA non-coding upstream 8025 44376823 ~ 44377041 (-)
G404379 NA non-coding upstream 24230 44393028 ~ 44398464 (-)
G404301 NA non-coding upstream 30063 44398861 ~ 44400018 (-)
G403104 NA other downstream 781653 43544687 ~ 43548274 (-)
plac8.2 plac8 other downstream 2294286 42033371 ~ 42035641 (-)
G401190 denr other downstream 2887938 41417117 ~ 41441989 (-)
LOC110523841 LOC106562568 other downstream 2916247 41411545 ~ 41414099 (-)
LOC110523839 LOC106561138 other downstream 2924148 41373889 ~ 41405792 (-)
G404357 NA other upstream 4700 44373498 ~ 44373874 (-)
G404520 NA other upstream 271003 44639801 ~ 44640045 (-)
G404649 NA other upstream 392817 44761615 ~ 44762033 (-)
G404935 LOC106561730 other upstream 629438 44998236 ~ 44998709 (-)
G405292 LOC106561687 other upstream 822734 45191532 ~ 45192467 (-)

Expression


Co-expression Network