LOC110523915


Basic Information

Item Value
gene id LOC110523915
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 44462658 ~ 44466770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603063.2
ATGTAGCAATGTTATTATGGTCCTTTAATAACTAATTGAGGAAAAGGCACACAGATATCTGGGAGACAATACTACGTAGGCTGTTTAATAGAGCCAGCTaactaaacttgtagtaatcatggctgaGTACCAACCAGGCACGCAGGGCATGTGCCCAGAGGCCCTGACCTCCagagggcccccattgattttgttagtcattctcactcgATACCATTATTAGGGTACTAGGGGGTAACTCCCCCCCATGTTATTCACATTAAGACCACAAGTTGTCACCAAATTATTTTCCCAACAATTTTCCTGGCTGCCGCTGCTCTTGCTCAACCAAAAATGACTGCTGTGTCATGACAACTTTTGGAGGTATTTCAACAAAACGATTTTGTGAAGAGAACATACAGGAAGAAGACAGACCATGGAAGCTGTGTCTCGGGGGTGATACAGCATCCCCTGAAGGCAATAGACCTTAAAGGGGCGTGCCAGGGTGTTCAACATTCCACCAAGAACCCTATGGCACCACAGAGGAAAGGAGGTGAAAAACCCAGGCTTTCAGCCAAATGGGTGGGGCGTCAGTCTTCTCTTTCGCGTCTGAAAGGGACCTCGTCAATCGCATCATGGGACGTGAGAAGACTCGCCTTTgatctgacagagaggatgggaATCAAGCACAGGTTCATCAAAGTAAAGGGGTATGCATGGGTGGATTGGTTCAGTTGCTTAATGAAGCGCAACCCTCAACTGTCAGTTTGAGTATCGCAAGCAACCAGTCTTGCGAGGGCCGTGGGCTTTAATAAGCTTAAGGTtgaccagttttttttttttacggccTACAAGGACGTTTTTAACAGCATCAGGGACATCGGGCAAACAAAGATTTGGAACATGGACAAAAGTCCAGAAACTGTTGCCTGTGGTGGCCACCAAGGGAACAAAACGGGTTGCATGGTTGACCAGCGCAGAGTGGCTTCACAGTCACAGTAATTTGTGCTATCAGTGTAGCGAGGCAGTACGCACTGCCCCTCTTCATATGAGCGAACAGCTGCTGGTTGGAGCACCTGCACGGTCCGTTGGAAGGGTGAGTGACTCAGGCTGAGTCGACAGTGCCATCTTTGTCGACTGGCTCCACGACTTCATCCACAGTGTTGGTTGCACCCCTGAGGAACCCCACATCCTCATCCTCGATGGGCACCACTCCCATAAGACccttgaggctgttctgacagcAAGAGGCCAGGGTCTGATTCTCATCACTCTACCACCCCACTGCAGCCACAAAATGCAGCCGTTAGACCGTACCGTTTTCAAGGGTCTGATGGCCTTTTACAACAGGGCAGCAGATCAGTGGATGACGATGCATCCTGGGAAAAGGATATGTATATACCAAATGGCTAGACTCTTCACAAAGATCTATAACAAGGTGGCCAgtgtggagagaggagtggagggctTCTGGGCCAGTGGGCTGTGGCCTTTGGAGAAGGACATCTTCACAGAGGCAGACTTCATGGTCACTGAAGTTATAGAGGAGCCTGAGCCCATTGCCAAATCCATTGAACCACAGTGCTCTACCGCTGCCACCGATGCAGCTACCAGCTCTACCACCGCCACCTCTACCGCCACCATCACTAGCTCTACCTACACCACCACCAGCTCTAACGCCGAAACCTCTACCTCCGCGACATCTACCTCCGCCACAACCTCCACCGTGCAGCCTACCCTTGCTCCAAATCTGCAGCAGTTCTATTGGAGTTGTGGCCGAGGCTCCAGGAGGcgaggcagaggaagaggaaggcagAGTCTGCAGCTGTACTGACAGCCTCACCTTACAAAAGGTTGCTGGAGGAAAATGCTCGACAGAAACATCAacaagaagaaaagagagagagtaagaaaacAAATCAGGTTCTTCAAAAAAAAATTGGTCTCAAAGAAGGTTGGTGCAACACAACAAGCCACATCAGCCACCAAAGAGGGGGGGCAGAGGGTCTTTTCTGTGAGGTGCTGGTTTCAGTCACAGGTGGGGACTGGATTAGGTGTGAGCACTGCAGGAGTTGGGCTCATGGGTTGTGCAATAGCAGAGCAAAAGAGATGCAACATCAATGTTACACTGAATTAGTTAACTTGTGATTTATTGTTATTAAATGTTATATT
>XR_005051742.1
ATGTAGCAATGTTATTATGGTCCTTTAATAACTAATTGAGGAAAAGGCACACAGATATCTGGGAGACAATACTACGTAGGCTGTTTAATAGAGCCAGCTaactaaacttgtagtaatcatggctgaGTACCAACCAGGCACGCAGGGCATGTGCCCAGAGGCCCTGACCTCCagagggcccccattgattttgttagtcattctcactcgATACCATTATTAGGGTACTAGGGGGTAACTCCCCCCCATGTTATTCACATTAAGACCACAAGTTGTCACCAAATTATTTTCCCAACAATTTTCCTGGCTGCCGCTGCTCTTGCTCAACCAAAAATGACTGCTGTGTCATGACAACTTTTGGAGGTATTTCAACAAAACGATTTTGTGAAGAGAACATACAGGAAGAAGACAGACCATGGAAGCTGTGTCTCGGGGGTGATACAGCATCCCCTGAAGGCAATAGACCTTAAAGGGGCGTGCCAGGGTGTTCAACATTCCACCAAGAACCCTATGGCACCACAGAGGAAAGGAGGTGAAAAACCCAGGCTTTCAGCCAAATGGGTGGGGCGTCAGTCTTCTCTTTCGCGTCTGAAAGGGACCTCGTCAATCGCATCATGGGACGTGAGAAGACTCGCCTTTgatctgacagagaggatgggaATCAAGCACAGGTTCATCAAAGTAAAGGGGTATGCATGGGTGGATTGGTTCAGTTGCTTAATGAAGCGCAACCCTCAACTGTCAGTTTGAGTATCGCAAGCAACCAGTCTTGCGAGGGCCGTGGGCTTTAATAAGCTTAAGGTtgaccagttttttttttttacggccTACAAGGACGTTTTTAACAGCATCAGGGACATCGGGCAAACAAAGATTTGGAACATGGACAAAAGTCCAGAAACTGTTGCCTGTGGTGGCCACCAAGGGAACAAAACGGGTTGCATGGTTGACCAGCGCAGAGTGGCTTCACAGTCACAGTAATTTGTGCTATCAGTGTAGCGAGGCAGTACGCACTGCCCCTCTTCATATGAGCGAACAGCTGCTGGTTGGAGCACCTGCACGGTCCGTTGGAAGGGTGAGTGACTCAGGCTGAGTCGACAGTGCCATCTTTGTCGACTGGCTCCACGACTTCATCCACAGTGTTGGTTGCACCCCTGAGGAACCCCACATCCTCATCCTCGATGGGCACCACTCCCATAAGACccttgaggctgttctgacagcAAGAGGCCAGGGTCTGATTCTCATCACTCTACCACCCCACTGCAGCCACAAAATGCAGCCGTTAGACCGTACCGTTTTCAAGGGTCTGATGGCCTTTTACAACAGGGCAGCAGATCAGTGGATGACGATGCATCCTGGGAAAAGGATATGTATATACCAAATGGCTAGACTCTTCACAAAGATCTATAACAAGGTGGCCAgtgtggagagaggagtggagggctTCTGGGCCAGTGGGCTGTGGCCTTTGGAGAAGGACATCTTCACAGAGGCAGACTTCATGGTCACTGAAGTTATAGAGGAGCCTGAGCCCATTGCCAGTAAGATAAAGTTATCTAAATTAACGAAAAGTAGCAGAAGAAGCATCTACTTGGTAGAAAGTGTTTATTGTACTTACACCGATGTATTGTTATGGTCGTTTATTTTCAATGCAAAGAATCCATTGAACCACAGTGCTCTACCGCTGCCACCGATGCAGCTACCAGCTCTACCACCGCCACCTCTACCGCCACCATCACTAGCTCTACCTACACCACCACCAGCTCTAACGCCGAAACCTCTACCTCCGCGACATCTACCTCCGCCACAACCTCCACCGTGCAGCCTACCCTTGCTCCAAATGTTGCTGCAGCAGTTCTATTGGAGTTGTGGCCGAGGCTCCAGGAGGcgaggcagaggaagaggaaggcagAGTCTGCAGCTGTACTGACAGCCTCACCTTACAAAAGGTTGCTGGAGGAAAATGCTCGACAGAAACATCAacaagaagaaaagagagagagtaagaaaacAAATCAGGTTCTTCAAAAAAAAATTGGTCTCAAAGAAGGTTGGTGCAACACAACAAGCCACATCAGCCACCAAAGAGGGGGGGCAGAGGGTCTTTTCTGTGAGGTGCTGGTTTCAGTCACAGGTGGGGACTGGATTAGGTGTGAGCACTGCAGGAGTTGGGCTCATGGGTTGTGCAATAGCAGAGCAAAAGAGATGCAACATCAATGTTACACTGAATTAGTTAACTTGTGATTTATTGTTATTAAATGTTATATT
>XR_005051743.1
ATGTAGCAATGTTATTATGGTCCTTTAATAACTAATTGAGGAAAAGGCACACAGATATCTGGGAGACAATACTACGTAGGCTGTTTAATAGAGCCAGCTaactaaacttgtagtaatcatggctgaGTACCAACCAGGCACGCAGGGCATGTGCCCAGAGGCCCTGACCTCCagagggcccccattgattttgttagtcattctcactcgATACCATTATTAGGGTACTAGGGGGTAACTCCCCCCCATGTTATTCACATTAAGACCACAAGTTGTCACCAAATTATTTTCCCAACAATTTTCCTGGCTGCCGCTGCTCTTGCTCAACCAAAAATGACTGCTGTGTCATGACAACTTTTGGAGGTATTTCAACAAAACGATTTTGTGAAGAGAACATACAGGAAGAAGACAGACCATGGAAGCTGTGTCTCGGGGGTGATACAGCATCCCCTGAAGGCAATAGACCTTAAAGGGGCGTGCCAGGGTGTTCAACATTCCACCAAGAACCCTATGGCACCACAGAGGAAAGGAGGTGAAAAACCCAGGCTTTCAGCCAAATGGGTGGGGCGTCAGTCTTCTCTTTCGCGTCTGAAAGGGACCTCGTCAATCGCATCATGGGACGTGAGAAGACTCGCCTTTgatctgacagagaggatgggaATCAAGCACAGGTTCATCAAAGTAAAGGGGTATGCATGGGTGGATTGGTTCAGTTGCTTAATGAAGCGCAACCCTCAACTGTCAGTTTGAGTATCGCAAGCAACCAGTCTTGCGAGGGCCGTGGGCTTTAATAAGCTTAAGGTtgaccagttttttttttttacggccTACAAGGACGTTTTTAACAGCATCAGGGACATCGGGCAAACAAAGATTTGGAACATGGACAAAAGTCCAGAAACTGTTGCCTGTGGTGGCCACCAAGGGAACAAAACGGGTTGCATGGTTGACCAGCGCAGAGTGGCTTCACAGTCACAGTAATTTGTGCTATCAGTGTAGCGAGGCAGTACGCACTGCCCCTCTTCATATGAGCGAACAGCTGCTGGTTGGAGCACCTGCACGGTCCGTTGGAAGGGTGAGTGACTCAGGCTGAGTCGACAGTGCCATCTTTGTCGACTGGCTCCACGACTTCATCCACAGTGTTGGTTGCACCCCTGAGGAACCCCACATCCTCATCCTCGATGGGCACCACTCCCATAAGACccttgaggctgttctgacagcAAGAGGCCAGGGTCTGATTCTCATCACTCTACCACCCCACTGCAGCCACAAAATGCAGCCGTTAGACCGTACCGTTTTCAAGGGTCTGATGGCCTTTTACAACAGGGCAGCAGATCAGTGGATGACGATGCATCCTGGGAAAAGGATATGTATATACCAAATGGCTAGACTCTTCACAAAGATCTATAACAAGGTGGCCAgtgtggagagaggagtggagggctTCTGGGCCAGTGGGCTGTGGCCTTTGGAGAAGGACATCTTCACAGAGGCAGACTTCATGGTCACTGAAGTTATAGAGGAGCCTGAGCCCATTGCCACTACCAGCTCTACCACCGCCACCTCTACCGCCACCATCACTAGCTCTACCTACACCACCACCAGCTCTAACGCCGAAACCTCTACCTCCGCGACATCTACCTCCGCCACAACCTCCACCGTGCAGCCTACCCTTGCTCCAAATGTTGCTGCAGCAGTTCTATTGGAGTTGTGGCCGAGGCTCCAGGAGGcgaggcagaggaagaggaaggcagAGTCTGCAGCTGTACTGACAGCCTCACCTTACAAAAGGTTGCTGGAGGAAAATGCTCGACAGAAACATCAacaagaagaaaagagagagagtaagaaaacAAATCAGGTTCTTCAAAAAAAAATTGGTCTCAAAGAAGGTTGGTGCAACACAACAAGCCACATCAGCCACCAAAGAGGGGGGGCAGAGGGTCTTTTCTGTGAGGTGCTGGTTTCAGTCACAGGTGGGGACTGGATTAGGTGTGAGCACTGCAGGAGTTGGGCTCATGGGTTGTGCAATAGCAGAGCAAAAGAGATGCAACATCAATGTTACACTGAATTAGTTAACTTGTGATTTATTGTTATTAAATGTTATATT
>XM_021603061.2
ATCATGTACTTTGTCGACGGTCCCTAACTGGTTGCATTGATGGTGAGCCACGCTGCCTACACCATATGATTAGAAAAAAATAAGACCTGTGCAATGTTGTACAACTTTTGCCTTCGTAAACAGCTTAACCTGAGAAGAGAACATACAGGAAGAAGACAGACCATGGAAGCTGTGTCTCGGGGGTGATACAGCATCCCCTGAAGGCAATAGACCTTAAAGGGGCGTGCCAGGGTGTTCAACATTCCACCAAGAACCCTATGGCACCACAGAGGAAAGGAGGTGAAAAACCCAGGCTTTCAGCCAAATGGGTGGGGCGTCAGTCTTCTCTTTCGCGTCTGAAAGGGACCTCGTCAATCGCATCATGGGACGTGAGAAGACTCGCCTTTgatctgacagagaggatgggaATCAAGCACAGGTTCATCAAAGTAAAGGGGTATGCATGGGTGGATTGGTTCAGTTGCTTAATGAAGCGCAACCCTCAACTGTCAGTTTGAGTATCGCAAGCAACCAGTCTTGCGAGGGCCGTGGGCTTTAATAAGCTTAAGGTtgaccagttttttttttttacggccTACAAGGACGTTTTTAACAGCATCAGGGACATCGGGCAAACAAAGATTTGGAACATGGACAAAAGTCCAGAAACTGTTGCCTGTGGTGGCCACCAAGGGAACAAAACGGGTTGCATGGTTGACCAGCGCAGAGTGGCTTCACAGTCACAGTAATTTGTGCTATCAGTGTAGCGAGGCAGTACGCACTGCCCCTCTTCATATGAGCGAACAGCTGCTGGTTGGAGCACCTGCACGGTCCGTTGGAAGGGTGAGTGACTCAGGCTGAGTCGACAGTGCCATCTTTGTCGACTGGCTCCACGACTTCATCCACAGTGTTGGTTGCACCCCTGAGGAACCCCACATCCTCATCCTCGATGGGCACCACTCCCATAAGACccttgaggctgttctgacagcAAGAGGCCAGGGTCTGATTCTCATCACTCTACCACCCCACTGCAGCCACAAAATGCAGCCGTTAGACCGTACCGTTTTCAAGGGTCTGATGGCCTTTTACAACAGGGCAGCAGATCAGTGGATGACGATGCATCCTGGGAAAAGGATATGTATATACCAAATGGCTAGACTCTTCACAAAGATCTATAACAAGGTGGCCAgtgtggagagaggagtggagggctTCTGGGCCAGTGGGCTGTGGCCTTTGGAGAAGGACATCTTCACAGAGGCAGACTTCATGGTCACTGAAGTTATAGAGGAGCCTGAGCCCATTGCCAAATCCATTGAACCACAGTGCTCTACCGCTGCCACCGATGCAGCTACCAGCTCTACCACCGCCACCTCTACCGCCACCATCACTAGCTCTACCTACACCACCACCAGCTCTAACGCCGAAACCTCTACCTCCGCGACATCTACCTCCGCCACAACCTCCACCGTGCAGCCTACCCTTGCTCCAAATGTTGCTGCAGCAGTTCTATTGGAGTTGTGGCCGAGGCTCCAGGAGGcgaggcagaggaagaggaaggcagAGTCTGCAGCTGTACTGACAGCCTCACCTTACAAAAGGTTGCTGGAGGAAAATGCTCGACAGAAACATCAacaagaagaaaagagagagagtaagaaaacAAATCAGGTTCTTCAAAAAAAAATTGGTCTCAAAGAAGGTTGGTGCAACACAACAAGCCACATCAGCCACCAAAGAGGGGGGGCAGAGGGTCTTTTCTGTGAGGTGCTGGTTTCAGTCACAGGTGGGGACTGGATTAGGTGTGAGCACTGCAGGAGTTGGGCTCATGGGTTGTGCAATAGCAGAGCAAAAGAGATGCAACATCAATGTTACACTGAATTAGTTAACTTGTGATTTATTGTTATTAAATGTTATATT

Function

NR:

description
uncharacterized protein LOC110523915 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603063.2 False 2151 mRNA 0.49 4 44462658 44465814
XR_005051742.1 False 2271 mRNA 0.48 3 44462658 44465814
XR_005051743.1 False 2113 mRNA 0.49 4 44462658 44465814
XM_021603061.2 True 1902 mRNA 0.50 4 44462658 44466770

Neighbor

gene id symbol gene type direction distance location
LOC110523908 LOC106561873 coding downstream 93860 44329927 ~ 44368798 (-)
LOC110523906 LOC106561104 coding downstream 465298 43800087 ~ 43997360 (-)
LOC110523902 epb41l4a coding downstream 988066 43389592 ~ 43474592 (-)
LOC110523896 LOC106561975 coding downstream 1214617 43243581 ~ 43248041 (-)
LOC110523893 LOC106561951 coding downstream 1237118 43190710 ~ 43225540 (-)
LOC110523912 LOC100380870 coding upstream 33981 44500751 ~ 44551782 (-)
LOC118964775 NA coding upstream 76843 44543613 ~ 44543741 (-)
LOC110523916 ppip2 coding upstream 107563 44574333 ~ 44590062 (-)
tcp4 NA coding upstream 123863 44590633 ~ 44606484 (-)
LOC110523917 LOC106561827 coding upstream 143247 44610017 ~ 44623316 (-)
G404301 NA non-coding downstream 62640 44398861 ~ 44400018 (-)
G404379 NA non-coding downstream 64194 44393028 ~ 44398464 (-)
G404360 NA non-coding downstream 85617 44376823 ~ 44377041 (-)
G404359 NA non-coding downstream 85878 44376551 ~ 44376780 (-)
G404358 NA non-coding downstream 87119 44375256 ~ 44375539 (-)
G404398 NA non-coding upstream 86524 44553294 ~ 44553582 (-)
G404465 NA non-coding upstream 105385 44572155 ~ 44572376 (-)
G404484 NA non-coding upstream 140580 44607350 ~ 44607562 (-)
G404491 NA non-coding upstream 157325 44624095 ~ 44624395 (-)
G404494 NA non-coding upstream 158417 44625187 ~ 44625511 (-)
G404357 NA other downstream 88784 44373498 ~ 44373874 (-)
G403104 NA other downstream 914384 43544687 ~ 43548274 (-)
plac8.2 plac8 other downstream 2427017 42033371 ~ 42035641 (-)
G401190 denr other downstream 3020669 41417117 ~ 41441989 (-)
LOC110523841 LOC106562568 other downstream 3048978 41411545 ~ 41414099 (-)
G404520 NA other upstream 173031 44639801 ~ 44640045 (-)
G404649 NA other upstream 294845 44761615 ~ 44762033 (-)
G404935 LOC106561730 other upstream 531466 44998236 ~ 44998709 (-)
G405292 LOC106561687 other upstream 724762 45191532 ~ 45192467 (-)
G405871 NA other upstream 1118878 45585648 ~ 45586183 (-)

Expression

LOC110523915 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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LOC110523915 Expression in each Bioproject

Bar chart with 21 bars.
LOC110523915 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
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Co-expression Network