LOC110523912 (LOC100380870)


Basic Information

Item Value
gene id LOC110523912
gene name LOC100380870
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 44500751 ~ 44551782 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603057.2
CATGCGCAGCTCGGCGTGAGACACCCGATGACCGACAAGTGTGAAAGGGAATTTTTGTTGGAGAAGCAGTTTTATCCTAtcctcatactgtactgtctttgataaTGCGGTGGCTAGTTTTATGAATAGTAAAACAAGTAAAAAATATTTTCCCCGTGTTATGACTAGATCGTTTCCGGATGCTGTACAGGAAGTGATATTGCTGTGCATTTGCATTGTGGGATTTGTGTGCTTTCCTCTTGTAATCATGGCGGATGCCTTTGGTGACGATTTGTTCAGCGTGTTTGATGAAGAACAAACAACTTCAACTAAAAAGAAACTAGCGGTACCTGAAAAGGGGAAATCGACCAGTAAAAATGGCAAAGGAGGAAAGGCTGAGTTCTATGCAGCCAAGAGTAAGCGGGAAGCAGACAACAACGGGACAGATGAGGTGGTGTTTGGGAAGAGGTCCAAGCTGGAGACTCTTTCTACAGAGGAGATCAATCTTGCCGACTGCATGCCCAAGGTGAGGGTGGAGCCGGTTGAGACAGTGGAAGGATGCAACCACGAGGTGGCCCTACCAGCCAATGAGGAGTACAACCAGCTTAAGCCTCGTGTGGGGAAAGCAGCCAAGGAGTACCCCTTCGTTCTGGATCCCTTCCAACGTGAGGCCATTCTGTGTATCGATAACAACCAGTCAGTGCTTGTGTCTGCCCACACCTCTGCAGGAAAGACTGTCTGTGCAGAGTATGCCATAGCTCTAGCTCTGAGGGAGAAGCAGAGGGTCATCTTCACCAGCCCCATCAAAGCTCTGAGTAACCAGAAGTACAGAGAGATGTACGAAGAGTTCCAGGATGTTGGCCTGATGACCGGTGATGTCACCATCAACCCCACCGCCTCCTGCCTCATCATGACTACCGAAATCCTGAGGAGCATGTTGTACCGAGGGTCAGAGGTCATGAGAGAGGTGGCCTGGGTCATCTTCGATGAGATCCATTACATGAGAGATGCCGAGCGTGGCGTGGTGTGGGAGGAGACCATCATCCTGCTTCCTGACAACGTCCACTATGTCTTCCTGTCCGCCACCATCCCAAACGCCAAGCAGTTCGCTGAATGGATCTGCCACCTCCACAGACAGCCCTGTCACGTGGTGTACACTGACTTCCGGCCCACCCCCCTGCAGCACTACATCTTCCCAGCAGGTGGCGACGGACTTCACCTTGTGGTGGATGAGAACGGAGAGTTCAGGGAGGACAACTTCAACACGGCCATGCAGGTGCTGAGAGACACTGGTGACTCTGGAGGCAGCAGCGGAGGGGGCAAATGGGACCCCAAGGGGCGCAAAGGAGGGacacgagGGCCATCCAACGTGTTTAAGATTGTTAAAATGATCATGGAGCGGAACTTCCAGCCGGTCATCATCTTTAGCTTCAGTAAGAAGGAGTGTGAGGCCTATGCCCTGCAGGTGTCCAAGCTCGACTTCAACACAGATGAGGAGAAGAAGCTGGTGGAGGAGGTGTTCAACAATGCCATAGACTGTCTGTCAGACGATGACAAGAAGCTGCCCCAGGTGGAGCACGTCCTGCCTCTATTGAAGAGAGGTATAGGGATTCATCATGGAGGACTCCTCCCCATCCTAAAGGAAACCATTGAGATCCTGTTCTCTGAGGGGCTTCTCAAGGCCTTGTTCGCCACAGAGACCTTTGCCATGGGCATCAACATGCCCGCCCGCACTGTCCTGTTCACCAACGCACGCAAGTTTGATGGCAAAGACTTCCGCTGGatCACGTCTGGTGAGTACATCCAGATGTCCGGTCGAGCTggcaggagagggatggatgagaggggTATCGTCATCTTCATGGTGGATGAGAAGATGAGCCCTGCAATTGGGAAACAGCTGCTTAAGGGCTCGGCAGACCCTCTGAACAGTGCCTTCCACCTCACCTACAACATGGTTCTCAACTTGCTGCGGGTGGAGGAGATCAACCCGGAGTACATGCTGGAGAAGTCTTTCTACCAGTTTCAGCACTACAGGGCTGTGCCTGGGGTCGTAGAGAAGATGGCGAAGCTGGAAGAGATGTACAACGCCATAGAGATCCCCAACGAGGAGAGTGTGGTGACCTACTATAAGATCCGCCaacagctggccaaactgagcaaggaGATAGAGGACTTCATCCACAAACCAAAATACTGTCTTCCCTTCCTCCAGCCTGGCAGACTGGTCAAGGTCAAAAACGAAGATGCTGACTTTGGGTGGGGCGTGGTTGTTAATTTCTCAAAGAAGTCAAATGTCAAGGCCATAACGGGTGACGCAGACCCTCTATACGTGGTAGAGGTGCTGGTCCACTGCAGTAAGGAGAGTGTGAAGAACACCGCCACAGAGGCTGCCAAACCCGCTGCCGCTGGGGAGAAGGGGGAAATGCAGGTGGTTCCTGTGATGCTCCACCTCCTGACCTCCATCAGTTCAGTTCGTCTCTACAGCCCCAAAGACCTGCGGCCTTATGACAACAGACAGAGCATGCTCAAATCCATACAGGAGGTGCAGAAGAGGTTCCCGGACGGCGTTCCCCTTCTGGACCCCATCGATGACATGGGCATTAAGGACCCGGGCCTGAAGAAGGTCATCCAGAAGGTGGAGGCATTCGAACACAGGATGTACTCCCACCCCATGCACTCTGACCCCAGCCTGGAGGCCGTCTACTCCCTCTGCGAGAGGAAAGCCCTGATTGCGGGGGATATCAAAGGGGCCAAGCGGGAGCTGAAGAAGGCTCGAACCGTGCTGCAGATGGACGAGCTCAAGTGCAGGAAGCGCGTCCTGAGGCGTCTCGGGTTTGCCACTTCCTCGGATGTCATCGAAATGAAGGGCCGAGTGGCCTGTGAGATCAGCAGTGCTGATGAGCTTCTACTGACTGAGATGGTGTTCAACGGCCTGTTCAACGATCTGTCTGCAGAACAGGTTACCGCTCTACTCAGCGTCTTCATCTTCCAGGAGAACGTTAACGAGATGCCCAAGCTGACAGAGCAGCTGGCTGGACCTCTGAGACAGATGCAGGAGTGTGCCAAGCGTGTTGCCAAGGTGTCTGCGGAGGCTAAGCTGGAGGTGGATGAGGACACCTACCTGGACAAGTTCAAGCCTCACCTGATGGACGTGGTTTACACATGGGCTAACGGCTCCACCTTCGCACAGATCTGCAAGATGACCGACGTCTTTGAAGgGAGTATCATCCGCTGCATGCGTCGCCTGGAGGAGCTGCTCCGTCAGATGTGTCAAGCAGCCAAGGCCATCGGTAACACCGAGCTGGAGAACAAGTTTGCGGAGGGTATTACGAAAATCAAGAGGGATATTGTGTTTGCTGCCAGTTTATATCTGTGATTTGATGTATTTTGTGACACCTTTGCAAGACATGTGTTTGTTGGTTTGAGTGTCTGACATCATCCAgacaatgttttttatttgtgtTAATAAGCATAAAATGGCTTATTTTCCTTCCAAAAAGCGCAACATTTGTACATACTTCAACAATTTTAATAAAAGTCTGTATAGTGATTTCTTCTAACATACAGCTGgataaaacaaaatgtttttttgttgcttcAGGTGAAGATATATTATATTGGTCTGGATAATACACAGGAAGCTGTAATAGTAGCAGTCCAGCCAAGGCAACATGGGTGGGACTCAAGAGTCCAATAGGGAGCTCAGACAGCTTGGCTCCAGGTCATAGGTCAGGAAAGCACAAAGCAGGGTTACATTCACATGTCTGGTTCattcccagatggcaccctattccctacatagtgcactagttttgaccaggacccaatgTAGGcagtagggtaccatttgagacgCATAATTTCTTTCCACCCCAGTGGTCCGACCCTTGGTGGGGTATGATGTGCATGCAGTAAAGGGTTCCTCTTCTCTATAGCTTAGTTGGGGCTGCTGTCGTAATGGTTTCCGTTAGTGGGTGTCTCTTGCAGGCTGGTGTGGGGAATCTCCACATCCTCCTGGGGCTCCACCCTCTTCTTGAAGAAGTCTGACACACAAAATACCTGCAAGGGAAAGACAAGTGTCAGTGGACAGCTTTGGAGGGAAATGGTTGACCTACCTCAGAGTTCATGATTTTATTGAAGAGAATGGCTACTTAGTAGGAAGTAAGGCTTTTAAAGTGGGACACGTATAGGTCAGGAGACACCTTTTGACTAAAATACCCCTCTAACCTCTGGTCTTGTGCTCTCTGCTACCCAATTTCTATTGTAACAAATGGACAAATAAAGCTGAATTGCCTTAA
>XM_036977633.1
ATGCGCACATTGCGAGACTTTTGTGAAAGCTTGCGAAACAGACAAACAGATCAGAccggggtttgagaagtcaatgagagaagcaCAAATTGTTCCTGAGTTGTTCATTTTCTCGAAATCTAAAGATCGTTTCCGGATGCTGTACAGGAAGTGATATTGCTGTGCATTTGCATTGTGGGATTTGTGTGCTTTCCTCTTGTAATCATGGCGGATGCCTTTGGTGACGATTTGTTCAGCGTGTTTGATGAAGAACAAACAACTTCAACTAAAAAGAAACTAGCGGTACCTGAAAAGGGGAAATCGACCAGTAAAAATGGCAAAGGAGGAAAGGCTGAGTTCTATGCAGCCAAGAGTAAGCGGGAAGCAGACAACAACGGGACAGATGAGGTGGTGTTTGGGAAGAGGTCCAAGCTGGAGACTCTTTCTACAGAGGAGATCAATCTTGCCGACTGCATGCCCAAGGTGAGGGTGGAGCCGGTTGAGACAGTGGAAGGATGCAACCACGAGGTGGCCCTACCAGCCAATGAGGAGTACAACCAGCTTAAGCCTCGTGTGGGGAAAGCAGCCAAGGAGTACCCCTTCGTTCTGGATCCCTTCCAACGTGAGGCCATTCTGTGTATCGATAACAACCAGTCAGTGCTTGTGTCTGCCCACACCTCTGCAGGAAAGACTGTCTGTGCAGAGTATGCCATAGCTCTAGCTCTGAGGGAGAAGCAGAGGGTCATCTTCACCAGCCCCATCAAAGCTCTGAGTAACCAGAAGTACAGAGAGATGTACGAAGAGTTCCAGGATGTTGGCCTGATGACCGGTGATGTCACCATCAACCCCACCGCCTCCTGCCTCATCATGACTACCGAAATCCTGAGGAGCATGTTGTACCGAGGGTCAGAGGTCATGAGAGAGGTGGCCTGGGTCATCTTCGATGAGATCCATTACATGAGAGATGCCGAGCGTGGCGTGGTGTGGGAGGAGACCATCATCCTGCTTCCTGACAACGTCCACTATGTCTTCCTGTCCGCCACCATCCCAAACGCCAAGCAGTTCGCTGAATGGATCTGCCACCTCCACAGACAGCCCTGTCACGTGGTGTACACTGACTTCCGGCCCACCCCCCTGCAGCACTACATCTTCCCAGCAGGTGGCGACGGACTTCACCTTGTGGTGGATGAGAACGGAGAGTTCAGGGAGGACAACTTCAACACGGCCATGCAGGTGCTGAGAGACACTGGTGACTCTGGAGGCAGCAGCGGAGGGGGCAAATGGGACCCCAAGGGGCGCAAAGGAGGGacacgagGGCCATCCAACGTGTTTAAGATTGTTAAAATGATCATGGAGCGGAACTTCCAGCCGGTCATCATCTTTAGCTTCAGTAAGAAGGAGTGTGAGGCCTATGCCCTGCAGGTGTCCAAGCTCGACTTCAACACAGATGAGGAGAAGAAGCTGGTGGAGGAGGTGTTCAACAATGCCATAGACTGTCTGTCAGACGATGACAAGAAGCTGCCCCAGGTGGAGCACGTCCTGCCTCTATTGAAGAGAGGTATAGGGATTCATCATGGAGGACTCCTCCCCATCCTAAAGGAAACCATTGAGATCCTGTTCTCTGAGGGGCTTCTCAAGGCCTTGTTCGCCACAGAGACCTTTGCCATGGGCATCAACATGCCCGCCCGCACTGTCCTGTTCACCAACGCACGCAAGTTTGATGGCAAAGACTTCCGCTGGatCACGTCTGGTGAGTACATCCAGATGTCCGGTCGAGCTggcaggagagggatggatgagaggggTATCGTCATCTTCATGGTGGATGAGAAGATGAGCCCTGCAATTGGGAAACAGCTGCTTAAGGGCTCGGCAGACCCTCTGAACAGTGCCTTCCACCTCACCTACAACATGGTTCTCAACTTGCTGCGGGTGGAGGAGATCAACCCGGAGTACATGCTGGAGAAGTCTTTCTACCAGTTTCAGCACTACAGGGCTGTGCCTGGGGTCGTAGAGAAGATGGCGAAGCTGGAAGAGATGTACAACGCCATAGAGATCCCCAACGAGGAGAGTGTGGTGACCTACTATAAGATCCGCCaacagctggccaaactgagcaaggaGATAGAGGACTTCATCCACAAACCAAAATACTGTCTTCCCTTCCTCCAGCCTGGCAGACTGGTCAAGGTCAAAAACGAAGATGCTGACTTTGGGTGGGGCGTGGTTGTTAATTTCTCAAAGAAGTCAAATGTCAAGGCCATAACGGGTGACGCAGACCCTCTATACGTGGTAGAGGTGCTGGTCCACTGCAGTAAGGAGAGTGTGAAGAACACCGCCACAGAGGCTGCCAAACCCGCTGCCGCTGGGGAGAAGGGGGAAATGCAGGTGGTTCCTGTGATGCTCCACCTCCTGACCTCCATCAGTTCAGTTCGTCTCTACAGCCCCAAAGACCTGCGGCCTTATGACAACAGACAGAGCATGCTCAAATCCATACAGGAGGTGCAGAAGAGGTTCCCGGACGGCGTTCCCCTTCTGGACCCCATCGATGACATGGGCATTAAGGACCCGGGCCTGAAGAAGGTCATCCAGAAGGTGGAGGCATTCGAACACAGGATGTACTCCCACCCCATGCACTCTGACCCCAGCCTGGAGGCCGTCTACTCCCTCTGCGAGAGGAAAGCCCTGATTGCGGGGGATATCAAAGGGGCCAAGCGGGAGCTGAAGAAGGCTCGAACCGTGCTGCAGATGGACGAGCTCAAGTGCAGGAAGCGCGTCCTGAGGCGTCTCGGGTTTGCCACTTCCTCGGATGTCATCGAAATGAAGGGCCGAGTGGCCTGTGAGATCAGCAGTGCTGATGAGCTTCTACTGACTGAGATGGTGTTCAACGGCCTGTTCAACGATCTGTCTGCAGAACAGGTTACCGCTCTACTCAGCGTCTTCATCTTCCAGGAGAACGTTAACGAGATGCCCAAGCTGACAGAGCAGCTGGCTGGACCTCTGAGACAGATGCAGGAGTGTGCCAAGCGTGTTGCCAAGGTGTCTGCGGAGGCTAAGCTGGAGGTGGATGAGGACACCTACCTGGACAAGTTCAAGCCTCACCTGATGGACGTGGTTTACACATGGGCTAACGGCTCCACCTTCGCACAGATCTGCAAGATGACCGACGTCTTTGAAGgGAGTATCATCCGCTGCATGCGTCGCCTGGAGGAGCTGCTCCGTCAGATGTGTCAAGCAGCCAAGGCCATCGGTAACACCGAGCTGGAGAACAAGTTTGCGGAGGGTATTACGAAAATCAAGAGGGATATTGTGTTTGCTGCCAGTTTATATCTGTGATTTGATGTATTTTGTGACACCTTTGCAAGACATGTGTTTGTTGGTTTGAGTGTCTGACATCATCCAgacaatgttttttatttgtgtTAATAAGCATAAAATGGCTTATTTTCCTTCCAAAAAGCGCAACATTTGTACATACTTCAACAATTTTAATAAAAGTCTGTATAGTGATTTCTTCTAACATACAGCTGgataaaacaaaatgtttttttgttgcttcAGGTGAAGATATATTATATTGGTCTGGATAATACACAGGAAGCTGTAATAGTAGCAGTCCAGCCAAGGCAACATGGGTGGGACTCAAGAGTCCAATAGGGAGCTCAGACAGCTTGGCTCCAGGTCATAGGTCAGGAAAGCACAAAGCAGGGTTACATTCACATGTCTGGTTCattcccagatggcaccctattccctacatagtgcactagttttgaccaggacccaatgTAGGcagtagggtaccatttgagacgCATAATTTCTTTCCACCCCAGTGGTCCGACCCTTGGTGGGGTATGATGTGCATGCAGTAAAGGGTTCCTCTTCTCTATAGCTTAGTTGGGGCTGCTGTCGTAATGGTTTCCGTTAGTGGGTGTCTCTTGCAGGCTGGTGTGGGGAATCTCCACATCCTCCTGGGGCTCCACCCTCTTCTTGAAGAAGTCTGACACACAAAATACCTGCAAGGGAAAGACAAGTGTCAGTGGACAGCTTTGGAGGGAAATGGTTGACCTACCTCAGAGTTCATGATTTTATTGAAGAGAATGGCTACTTAGTAGGAAGTAAGGCTTTTAAAGTGGGACACGTATAGGTCAGGAGACACCTTTTGACTAAAATACCCCTCTAACCTCTGGTCTTGTGCTCTCTGCTACCCAATTTCTATTGTAACAAATGGACAAATAAAGCTGAATTGCCTTAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0051781 positive regulation of cell division biological_process
GO:0031101 fin regeneration biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12598 MTR4, SKIV2L2; ATP-dependent RNA helicase DOB1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603057.2 False 4280 mRNA 0.51 26 44500751 44551515
XM_036977633.1 True 4237 mRNA 0.51 27 44500751 44551782

Neighbor

gene id symbol gene type direction distance location
LOC110523915 NA coding downstream 33981 44462658 ~ 44466770 (-)
LOC110523908 LOC106561873 coding downstream 131953 44329927 ~ 44368798 (-)
LOC110523906 LOC106561104 coding downstream 503391 43800087 ~ 43997360 (-)
LOC110523902 epb41l4a coding downstream 1026159 43389592 ~ 43474592 (-)
LOC110523896 LOC106561975 coding downstream 1252710 43243581 ~ 43248041 (-)
LOC110523916 ppip2 coding upstream 22551 44574333 ~ 44590062 (-)
tcp4 NA coding upstream 38851 44590633 ~ 44606484 (-)
LOC110523917 LOC106561827 coding upstream 58235 44610017 ~ 44623316 (-)
LOC118964612 NA coding upstream 131160 44682942 ~ 44685539 (-)
LOC118936294 LOC106561814 coding upstream 201133 44752915 ~ 44757984 (-)
G404407 NA non-coding downstream 23143 44451981 ~ 44477608 (-)
G404301 NA non-coding downstream 100733 44398861 ~ 44400018 (-)
G404379 NA non-coding downstream 102287 44393028 ~ 44398464 (-)
G404360 NA non-coding downstream 123710 44376823 ~ 44377041 (-)
G404359 NA non-coding downstream 123971 44376551 ~ 44376780 (-)
G404398 NA non-coding upstream 1512 44553294 ~ 44553582 (-)
G404465 NA non-coding upstream 20373 44572155 ~ 44572376 (-)
G404484 NA non-coding upstream 55568 44607350 ~ 44607562 (-)
G404491 NA non-coding upstream 72313 44624095 ~ 44624395 (-)
G404494 NA non-coding upstream 73405 44625187 ~ 44625511 (-)
G404357 NA other downstream 126877 44373498 ~ 44373874 (-)
G403104 NA other downstream 952477 43544687 ~ 43548274 (-)
plac8.2 plac8 other downstream 2465110 42033371 ~ 42035641 (-)
G401190 denr other downstream 3058762 41417117 ~ 41441989 (-)
LOC110523841 LOC106562568 other downstream 3087071 41411545 ~ 41414099 (-)
G404520 NA other upstream 88019 44639801 ~ 44640045 (-)
G404649 NA other upstream 209833 44761615 ~ 44762033 (-)
G404935 LOC106561730 other upstream 446454 44998236 ~ 44998709 (-)
G405292 LOC106561687 other upstream 639750 45191532 ~ 45192467 (-)
G405871 NA other upstream 1033866 45585648 ~ 45586183 (-)

Expression


Co-expression Network