LOC110523925 (LOC106562826)


Basic Information

Item Value
gene id LOC110523925
gene name LOC106562826
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 44915184 ~ 44933176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603077.2
ACTATAAAACCAGCTCCTCCAGTCGACCAGTCCCATGGCATGTATTGGTGGGCATCTACAAGGCACAATACACTGTATAACACAAGCAGGGATAGTGCAAATAAGATAAGCGCAGATCTTACCACCAGTCAGCTGTTTGCAATGGAGATCCTGGAGGCGAGGGCGGCGCAAATTGCGCAACGATGGATAACTGACATTTTTACGCGCGTCCACACCACCTGCGACGTTCCCGAACACGCAGTTTTTGGACCATGTGAGCTGAATCACACCTCTGTTTATGACAGCATCGCCTTCATCGCTCTCAAGTCTATGGACAGAAGATCGGCACCATACATTTTAAGGGTGGACACCTCAGCGCACAAAATGCCCACTGACGGCCCGATGTGGCTGCGGCTCGTCCAGTCAGCCCGGAGCAGCGAGGAACAGAACCTAGAGGCCTATGTGAAGAACGGACAATTGTTCTTTAGAGCCCTCAGGACGATCCAGATGGATGAGGAGCTTTTGGTGTGGTATGGGAAAGACCTTGCCAAGCTTCTTCTACTGAACCCACTGCAGATGCAAAGCAAAGGTGCTGGTCCATACACATGTACAAACTGCAACCAGGGCTTTGAGTCTGAGTTCCCCTTCCTGGCACATTGGAGATTCCTTTGCACACAGAGACAACCAAACAGCCACACCACCAAACCTGGTCTAGACAACACCAACCATGTGAAACCTGACTCCCTTCCCGTTCCTGCCTTCAAACTGAGCCATCCAGAGACAAGTCCACAGGATGGAAAACCTGCAACAGACTTCCACAATCTAGCCAGGGATATGGAGAATAACAGTAATAAGACAGGCTTGTCTGGTACCAGGTGGGCAGGGAGCGCCCTCAAAAGGAAACACACGGAGGAGAGTTGGAATGGCCCACAGCCTCTAGTCATAAAGCAGGaaccactgtactgtactttgAACTTAAACCAACAACCGAGCCCGGTCACCTGTCACCTGCCCACCAATATAATAAGGAGCACCTTTACTAAAGACAGAACCGCTCAACTAAAACCACAACTGAAGACCTCAGGGCCAGAAGACATTAGATCCAACCCACAGAACCAGAGCATTCAGCCCAGAAGTGGCCCAGCAGTGGAGCAGAGTGACTCAAAGAAGAAGACTCTGAAAGACACTCTGTCTCGATCTCCATCCCGCTCTGAGGAAACCTCCACTGACTCTCCTCCTGTCACCTCTGCCTTCAACCAAGTCTCTGTCTCGGAGAACAGGAGAAGTGCCTTCTCCCAGCCCCCACGCTCTGTTCCACTTCCCCAGACTACCCCCCTGCCTGAGAGGGCTAAAATCTCCATTACCACCCCCTCTACTGCCCTCCACAGACCTGTGCTGGTCCAGGGTGTTTTGAAACAGAGGCACCCTCTCTATAGCCCAGCAGCTCTCTGGCCCTGGACCCCAGGGAGATCCCTGCAGGTTCCGATCCCCCCCTCCCCGGTGCTCCTGTCCCCTTCCGTCTCACGACTCTCGCCCCTCTGCCTGCCGGCTCAGAACTGGTGTGCCAAATGCAACATTTCCTTCCGCCTGACTTCAGACCTGGTGCAGCATATGAGGTCTCACCACAAGAGGGCGCTTGATGCCACAGGATCTGCGTGTGGGGTGAAACAACAGCATcacagggagagggaagagaggctcAAGTGTTCCATCTGCAGCGAGGTCTTCAGACAACGTCATCACCTTGCACGTCACTTGACCTCTCATACATGAGTTCAGATCATTAGTAAGGTATAATATTCATATTGATAAAGATACTAATGGGGAACTAATTCAACACATGAAATAACTATTATGTAATTATTATAATGTACATTAACAATGCaatgacattttatttgaaaCATGAATGAGGCTGCTTACATGTACAGCATCATTTTTCCCCCTTAGAAATAGTTTAGATTTTCCTCTCAATTCAGTCAAATGTGACATTTTTAGTATGCTATTTATTTTCTTATTCTTTtacaataaattattattattattatttttttttacaatattacAATATTTTCGGTGTGGATGTGACTTGATTGTAAGCTTAGTTGTGAACACTAGATGGCACTAGAGAAAAATTTAGAGGGacagaacaaacaaaaaaacacgtttaaatgttctttattttcttttaaaataaaaaatatacctCTTATTTCACATAAGAACTTAACGTAGAGTACCCTGATAAGTAGCACATTGGGATGGGCAAACAATAAACACATATACACGATAAAAAAAGAAATAGTAAAAAAAGAATAGAATACATTAacataaaacatttataaaaa
>XM_036977641.1
TTTGATTattgaatcagctgtgcagtgctagggcaaaaccaaaatgtgcacatAGGGGGGGACGCGAGGACCGAGTCTGGAAATCCCTGTAACTACACCACCAGCACAGTGGGCGGGGAGACAGCAGGAGATCCTGGAGGCGAGGGCGGCGCAAATTGCGCAACGATGGATAACTGACATTTTTACGCGCGTCCACACCACCTGCGACGTTCCCGAACACGCAGTTTTTGGACCATGTGAGCTGAATCACACCTCTGTTTATGACAGCATCGCCTTCATCGCTCTCAAGTCTATGGACAGAAGATCGGCACCATACATTTTAAGGGTGGACACCTCAGCGCACAAAATGCCCACTGACGGCCCGATGTGGCTGCGGCTCGTCCAGTCAGCCCGGAGCAGCGAGGAACAGAACCTAGAGGCCTATGTGAAGAACGGACAATTGTTCTTTAGAGCCCTCAGGACGATCCAGATGGATGAGGAGCTTTTGGTGTGGTATGGGAAAGACCTTGCCAAGCTTCTTCTACTGAACCCACTGCAGATGCAAAGCAAAGGTGCTGGTCCATACACATGTACAAACTGCAACCAGGGCTTTGAGTCTGAGTTCCCCTTCCTGGCACATTGGAGATTCCTTTGCACACAGAGACAACCAAACAGCCACACCACCAAACCTGGTCTAGACAACACCAACCATGTGAAACCTGACTCCCTTCCCGTTCCTGCCTTCAAACTGAGCCATCCAGAGACAAGTCCACAGGATGGAAAACCTGCAACAGACTTCCACAATCTAGCCAGGGATATGGAGAATAACAGTAATAAGACAGGCTTGTCTGGTACCAGGTGGGCAGGGAGCGCCCTCAAAAGGAAACACACGGAGGAGAGTTGGAATGGCCCACAGCCTCTAGTCATAAAGCAGGaaccactgtactgtactttgAACTTAAACCAACAACCGAGCCCGGTCACCTGTCACCTGCCCACCAATATAATAAGGAGCACCTTTACTAAAGACAGAACCGCTCAACTAAAACCACAACTGAAGACCTCAGGGCCAGAAGACATTAGATCCAACCCACAGAACCAGAGCATTCAGCCCAGAAGTGGCCCAGCAGTGGAGCAGAGTGACTCAAAGAAGAAGACTCTGAAAGACACTCTGTCTCGATCTCCATCCCGCTCTGAGGAAACCTCCACTGACTCTCCTCCTGTCACCTCTGCCTTCAACCAAGTCTCTGTCTCGGAGAACAGGAGAAGTGCCTTCTCCCAGCCCCCACGCTCTGTTCCACTTCCCCAGACTACCCCCCTGCCTGAGAGGGCTAAAATCTCCATTACCACCCCCTCTACTGCCCTCCACAGACCTGTGCTGGTCCAGGGTGTTTTGAAACAGAGGCACCCTCTCTATAGCCCAGCAGCTCTCTGGCCCTGGACCCCAGGGAGATCCCTGCAGGTTCCGATCCCCCCCTCCCCGGTGCTCCTGTCCCCTTCCGTCTCACGACTCTCGCCCCTCTGCCTGCCGGCTCAGAACTGGTGTGCCAAATGCAACATTTCCTTCCGCCTGACTTCAGACCTGGTGCAGCATATGAGGTCTCACCACAAGAGGGCGCTTGATGCCACAGGATCTGCGTGTGGGGTGAAACAACAGCATcacagggagagggaagagaggctcAAGTGTTCCATCTGCAGCGAGGTCTTCAGACAACGTCATCACCTTGCACGTCACTTGACCTCTCATACATGAGTTCAGATCATTAGTAAGGTATAATATTCATATTGATAAAGATACTAATGGGGAACTAATTCAACACATGAAATAACTATTATGTAATTATTATAATGTACATTAACAATGCaatgacattttatttgaaaCATGAATGAGGCTGCTTACATGTACAGCATCATTTTTCCCCCTTAGAAATAGTTTAGATTTTCCTCTCAATTCAGTCAAATGTGACATTTTTAGTATGCTATTTATTTTCTTATTCTTTtacaataaattattattattattatttttttttacaatattacAATATTTTCGGTGTGGATGTGACTTGATTGTAAGCTTAGTTGTGAACACTAGATGGCACTAGAGAAAAATTTAGAGGGacagaacaaacaaaaaaacacgtttaaatgttctttattttcttttaaaataaaaaatatacctCTTATTTCACATAAGAACTTAACGTAGAGTACCCTGATAAGTAGCACATTGGGATGGGCAAACAATAAACACATATACACGATAAAAAAAGAAATAGTAAAAAAAGAATAGAATACATTAacataaaacatttataaaaa
>XM_036977640.1
TGTGCTTGatagctatctagcatgctccaAACACGTGTGTAGCAGAAGAAGGTCGCTGGAAACGTGTTGTCACTGACAAATACTGTCCGCTGCAACTGTGATGAATCTGGTTAAAACAGAGATCCTGGAGGCGAGGGCGGCGCAAATTGCGCAACGATGGATAACTGACATTTTTACGCGCGTCCACACCACCTGCGACGTTCCCGAACACGCAGTTTTTGGACCATGTGAGCTGAATCACACCTCTGTTTATGACAGCATCGCCTTCATCGCTCTCAAGTCTATGGACAGAAGATCGGCACCATACATTTTAAGGGTGGACACCTCAGCGCACAAAATGCCCACTGACGGCCCGATGTGGCTGCGGCTCGTCCAGTCAGCCCGGAGCAGCGAGGAACAGAACCTAGAGGCCTATGTGAAGAACGGACAATTGTTCTTTAGAGCCCTCAGGACGATCCAGATGGATGAGGAGCTTTTGGTGTGGTATGGGAAAGACCTTGCCAAGCTTCTTCTACTGAACCCACTGCAGATGCAAAGCAAAGGTGCTGGTCCATACACATGTACAAACTGCAACCAGGGCTTTGAGTCTGAGTTCCCCTTCCTGGCACATTGGAGATTCCTTTGCACACAGAGACAACCAAACAGCCACACCACCAAACCTGGTCTAGACAACACCAACCATGTGAAACCTGACTCCCTTCCCGTTCCTGCCTTCAAACTGAGCCATCCAGAGACAAGTCCACAGGATGGAAAACCTGCAACAGACTTCCACAATCTAGCCAGGGATATGGAGAATAACAGTAATAAGACAGGCTTGTCTGGTACCAGGTGGGCAGGGAGCGCCCTCAAAAGGAAACACACGGAGGAGAGTTGGAATGGCCCACAGCCTCTAGTCATAAAGCAGGaaccactgtactgtactttgAACTTAAACCAACAACCGAGCCCGGTCACCTGTCACCTGCCCACCAATATAATAAGGAGCACCTTTACTAAAGACAGAACCGCTCAACTAAAACCACAACTGAAGACCTCAGGGCCAGAAGACATTAGATCCAACCCACAGAACCAGAGCATTCAGCCCAGAAGTGGCCCAGCAGTGGAGCAGAGTGACTCAAAGAAGAAGACTCTGAAAGACACTCTGTCTCGATCTCCATCCCGCTCTGAGGAAACCTCCACTGACTCTCCTCCTGTCACCTCTGCCTTCAACCAAGTCTCTGTCTCGGAGAACAGGAGAAGTGCCTTCTCCCAGCCCCCACGCTCTGTTCCACTTCCCCAGACTACCCCCCTGCCTGAGAGGGCTAAAATCTCCATTACCACCCCCTCTACTGCCCTCCACAGACCTGTGCTGGTCCAGGGTGTTTTGAAACAGAGGCACCCTCTCTATAGCCCAGCAGCTCTCTGGCCCTGGACCCCAGGGAGATCCCTGCAGGTTCCGATCCCCCCCTCCCCGGTGCTCCTGTCCCCTTCCGTCTCACGACTCTCGCCCCTCTGCCTGCCGGCTCAGAACTGGTGTGCCAAATGCAACATTTCCTTCCGCCTGACTTCAGACCTGGTGCAGCATATGAGGTCTCACCACAAGAGGGCGCTTGATGCCACAGGATCTGCGTGTGGGGTGAAACAACAGCATcacagggagagggaagagaggctcAAGTGTTCCATCTGCAGCGAGGTCTTCAGACAACGTCATCACCTTGCACGTCACTTGACCTCTCATACATGAGTTCAGATCATTAGTAAGGTATAATATTCATATTGATAAAGATACTAATGGGGAACTAATTCAACACATGAAATAACTATTATGTAATTATTATAATGTACATTAACAATGCaatgacattttatttgaaaCATGAATGAGGCTGCTTACATGTACAGCATCATTTTTCCCCCTTAGAAATAGTTTAGATTTTCCTCTCAATTCAGTCAAATGTGACATTTTTAGTATGCTATTTATTTTCTTATTCTTTtacaataaattattattattattatttttttttacaatattacAATATTTTCGGTGTGGATGTGACTTGATTGTAAGCTTAGTTGTGAACACTAGATGGCACTAGAGAAAAATTTAGAGGGacagaacaaacaaaaaaacacgtttaaatgttctttattttcttttaaaataaaaaatatacctCTTATTTCACATAAGAACTTAACGTAGAGTACCCTGATAAGTAGCACATTGGGATGGGCAAACAATAAACACATATACACGATAAAAAAAGAAATAGTAAAAAAAGAATAGAATACATTAacataaaacatttataaaaa

Function

NR:

description
PR domain zinc finger protein 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603077.2 False 2327 mRNA 0.46 4 44915184 44918008
XM_036977641.1 False 2310 mRNA 0.47 4 44915184 44918760
XM_036977640.1 True 2301 mRNA 0.46 4 44915184 44933176

Neighbor

gene id symbol gene type direction distance location
arl15b arl15 coding downstream 62113 44779768 ~ 44853071 (-)
LOC110523920 LOC106561814 coding downstream 156918 44752915 ~ 44758266 (-)
LOC118936294 LOC106561814 coding downstream 157200 44752915 ~ 44757984 (-)
LOC118964612 NA coding downstream 229645 44682942 ~ 44685539 (-)
LOC110523917 LOC106561827 coding downstream 291868 44610017 ~ 44623316 (-)
LOC110522867 NA coding upstream 37035 44970211 ~ 44993581 (-)
morn5 LOC106561708 coding upstream 102570 45035746 ~ 45052242 (-)
LOC110523936 LOC106561621 coding upstream 409463 45342639 ~ 45472051 (-)
LOC110523950 LOC106561514 coding upstream 1086522 46019698 ~ 46023840 (-)
LOC110523952 LOC106568444 coding upstream 1202236 46135412 ~ 46171517 (-)
G404833 NA non-coding downstream 45919 44868632 ~ 44869265 (-)
G404831 NA non-coding downstream 48605 44866368 ~ 44866579 (-)
G404829 NA non-coding downstream 51549 44863423 ~ 44863635 (-)
G404797 NA non-coding downstream 129955 44784667 ~ 44785229 (-)
G404924 NA non-coding upstream 43635 44976811 ~ 44977166 (-)
G404925 NA non-coding upstream 46334 44979510 ~ 44980117 (-)
G404930 NA non-coding upstream 56152 44989328 ~ 44989557 (-)
G404961 NA non-coding upstream 100137 45033313 ~ 45033892 (-)
G404962 NA non-coding upstream 100957 45034133 ~ 45034360 (-)
G404649 NA other downstream 153151 44761615 ~ 44762033 (-)
G404520 NA other downstream 275139 44639801 ~ 44640045 (-)
G404357 NA other downstream 541310 44373498 ~ 44373874 (-)
G403104 NA other downstream 1366910 43544687 ~ 43548274 (-)
plac8.2 plac8 other downstream 2879543 42033371 ~ 42035641 (-)
G404935 LOC106561730 other upstream 65060 44998236 ~ 44998709 (-)
G405292 LOC106561687 other upstream 258356 45191532 ~ 45192467 (-)
G405871 NA other upstream 652472 45585648 ~ 45586183 (-)
G405889 LOC106561608 other upstream 679252 45612428 ~ 45612955 (-)
G406076 LOC100136563 other upstream 1049662 45977280 ~ 45989483 (-)

Expression


Co-expression Network