LOC110523952 (LOC106568444)


Basic Information

Item Value
gene id LOC110523952
gene name LOC106568444
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 46135412 ~ 46171517 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603116.2
ACCCTCGGTGCAGCGCAGCCAGCCGTGCAGCGCAGCCAGTCGAAGCTGTTTTCTCATTATGAACTACCTCATCTATCCGCGTGAAGGTTTTCAGGAAAAAAAGGCTCATTTGAAGGGACAAGCTTAGACTACTGTAGGAGACGCCCACAGTAGGCGATTGCACGATTGCGCACAGTGGAAAGACTTAGACATCCAAGGCCGCTTGAGCGGAAGTTTCCTTGTGTAAATGCACAAATAACAGTTTCATGGGAAGGACAATACTTGTCTTTATATGGTGGTTACAACATTAACACAACATTGGAAAATGCTTCTACAAAGGATATTCCGGGCGGTTATCATGGGACCTCCGGGCTCGGGGAAAGGCACTGTGTCGGGGCGCATAGTAAAAAGTTTCGGATTAATGCACCTTTCAAGTGGGGACCTTTTGAGGGCCAACATTAAAGCCAAAACAGAGCTGGGTCTTCTGATGAAGTCATGCATTGACCAGGGTCAGCTGGTACCTGATGATGTCATCTCCCGTCTCATCCTGACAGAGATGAGGAACATAGACCAGAGCAGCTGGCTGCTGGATGGGTTCCCCCGTACCGTGTCTCAGGCAGAGTCTCTGGACAACGTGTGCAGTGTGGACACAGTTATCAACCTGGACGTGCCTTACCAGACCATCAAACAGAGACTGACTTCTCGCTGGCTCCATCTGCCCAGCGGACGTGTCTACAACATAGACTTCAACCCACCCAAGATCGCTGGCCTTGATGACGTCACCGGAGAGCCTTTGATTCAGAGAGATGATGACACACCAGAGACCGTCACCAGGAGGCTAAAGGCATACGAGAACCAGACACGACCTGTGCTGGAGTACTACAGGAGTAAAGGGGTGTTGGAGACATTCTCAGGAACGGAAACCAACAAGATCTGGCCTCACATTCAGGCCCTCCTGTCCAAAAAACTCTCCCTACAAAATTAAAAAGGATGTTGGGAAAGCATAGAATGCACTCCCGGGAAAAGAATGGATCAGTTTACCACAACTATAATGGGACTCAACTCTTTGGTCCAAAATGTAACAGTATCTCAGTGCCTATATAAGACCATGTTATTTACTACTACAACATATGTGGATGAGGACCACACATTCAACTAATGTCACATTCTATCTCTGTTCATTCCatatgtagcctggtcccagatctgtttatgctcTGGCCAACTTCTATAGCCATGCCAAACAATGACCATAGAAGTTGGcagaacagcacaaacagacctgtATTGTAGCTTGTTCCCAGGTGATGTGGTTTTGTATCCAATTCATACCAGTCCTTGGTCTGTCGGTGTACAGGACAACTATAATGGGGTAAATGGAAAAGTGCCATTATATTAGGTGAAGTTGCCTTGAATTCATCTTTAGGGCCAAGTGCCTATTGTTGACATGAAAATATATCGTGTCTCTTAaattataaaaacaaaaaaagtgaAAAAAATGCAACTAATGAATGATAAAAACACAGTGCCAATGATTTCAGTGAAAGACGTGTCACCAGAAATGCAGTAGTTTAGAATAGCTGTCATTTTAAGTtgttagcctggttaaaccagagtGAACGTTGCACTCCCGTGAAGTGAATCGTCATACAATCTATTTGGATGCCAGGCTCATAAGTTATCACGGGAGTGATAACATATTCTCAAAAAAAGCTGCAATTAGTAGTTTTAATTACGATATTTGTATATTTTCTCTGACTGTGGCCATGCCTTGAGAGTTTAGATTTGTAATCTGATTAATCTATACTGACAAATGTATGCTGAATGTTTTACCAGCATATTACATGCAGTATTTTTGTAGCACATTATCTGTACTTTGATGATCAGTCAAAGGAATAATTACATTAGTAAATGTGTATACTTTTATGAACCTTAAACTTCTATTTCATAACAAGTGTATTATTTATTATCAAGTCTCACTTGCTGGAAGAGACTGTATTCAGGCGAActgtttaaaaatgtaaaataaactaatataataaaaataaattgtgAAAAGCAA
>XM_021603117.2
GAAGCGTCCTCACGTACCCTCGGTGCAGCGCAGCCAGCCGTGCAGCGCAGCCAGTCGAAGCTGTTTTCTCATTATGAACTACCTCATCTATCCGCGTGAAGGTTTTCAGGAAAAAAAGGCTCATTTGAAGGGACAAGCTTAGACTACTGTAGGAGACGCCCACAGTAGGCGATTGCACGATTGCGCACAGTGGAAAGACTTAGACATCCAAGGCCGCTTGAGCGGAAGTTTCCTTGTGTAAATGCACAAATAACAGTTTCATGGGAAGGACAATACTTGTCTTTATATGGTGGTTACAACATTAACACAACATTGGAAAATGCTTCTACAAAGGATATTCCGGGCGGTTATCATGGGACCTCCGGGCTCGGGGAAAGGCACTGTGTCGGGGCGCATAGTAAAAAGTTTCGGATTAATGCACCTTTCAAGTGGGGACCTTTTGAGGGCCAACATTAAAGCCAAAACAGGGTTCCCCCGTACCGTGTCTCAGGCAGAGTCTCTGGACAACGTGTGCAGTGTGGACACAGTTATCAACCTGGACGTGCCTTACCAGACCATCAAACAGAGACTGACTTCTCGCTGGCTCCATCTGCCCAGCGGACGTGTCTACAACATAGACTTCAACCCACCCAAGATCGCTGGCCTTGATGACGTCACCGGAGAGCCTTTGATTCAGAGAGATGATGACACACCAGAGACCGTCACCAGGAGGCTAAAGGCATACGAGAACCAGACACGACCTGTGCTGGAGTACTACAGGAGTAAAGGGGTGTTGGAGACATTCTCAGGAACGGAAACCAACAAGATCTGGCCTCACATTCAGGCCCTCCTGTCCAAAAAACTCTCCCTACAAAATTAAAAAGGATGTTGGGAAAGCATAGAATGCACTCCCGGGAAAAGAATGGATCAGTTTACCACAACTATAATGGGACTCAACTCTTTGGTCCAAAATGTAACAGTATCTCAGTGCCTATATAAGACCATGTTATTTACTACTACAACATATGTGGATGAGGACCACACATTCAACTAATGTCACATTCTATCTCTGTTCATTCCatatgtagcctggtcccagatctgtttatgctcTGGCCAACTTCTATAGCCATGCCAAACAATGACCATAGAAGTTGGcagaacagcacaaacagacctgtATTGTAGCTTGTTCCCAGGTGATGTGGTTTTGTATCCAATTCATACCAGTCCTTGGTCTGTCGGTGTACAGGACAACTATAATGGGGTAAATGGAAAAGTGCCATTATATTAGGTGAAGTTGCCTTGAATTCATCTTTAGGGCCAAGTGCCTATTGTTGACATGAAAATATATCGTGTCTCTTAaattataaaaacaaaaaaagtgaAAAAAATGCAACTAATGAATGATAAAAACACAGTGCCAATGATTTCAGTGAAAGACGTGTCACCAGAAATGCAGTAGTTTAGAATAGCTGTCATTTTAAGTtgttagcctggttaaaccagagtGAACGTTGCACTCCCGTGAAGTGAATCGTCATACAATCTATTTGGATGCCAGGCTCATAAGTTATCACGGGAGTGATAACATATTCTCAAAAAAAGCTGCAATTAGTAGTTTTAATTACGATATTTGTATATTTTCTCTGACTGTGGCCATGCCTTGAGAGTTTAGATTTGTAATCTGATTAATCTATACTGACAAATGTATGCTGAATGTTTTACCAGCATATTACATGCAGTATTTTTGTAGCACATTATCTGTACTTTGATGATCAGTCAAAGGAATAATTACATTAGTAAATGTGTATACTTTTATGAACCTTAAACTTCTATTTCATAACAAGTGTATTATTTATTATCAAGTCTCACTTGCTGGAAGAGACTGTATTCAGGCGAActgtttaaaaatgtaaaataaactaatataataaaaataaattgtgAAAAGCAA

Function

NR:

description
GTP:AMP phosphotransferase AK3, mitochondrial-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603116.2 False 2041 mRNA 0.42 5 46135412 46171502
XM_021603117.2 True 1936 mRNA 0.42 4 46135412 46171517

Neighbor

gene id symbol gene type direction distance location
LOC110523950 LOC106561514 coding downstream 111835 46019698 ~ 46023840 (-)
LOC110523936 LOC106561621 coding downstream 663361 45342639 ~ 45472051 (-)
morn5 LOC106561708 coding downstream 1083170 45035746 ~ 45052242 (-)
LOC110522867 NA coding downstream 1141831 44970211 ~ 44993581 (-)
LOC110523925 LOC106562826 coding downstream 1202236 44915184 ~ 44933176 (-)
LOC110523954 plgrkt coding upstream 130295 46301812 ~ 46322518 (-)
LOC110523958 ermp1 coding upstream 239439 46410956 ~ 46450430 (-)
LOC110523959 kiaa2026 coding upstream 296518 46468035 ~ 46480496 (-)
LOC110522868 NA coding upstream 316898 46488415 ~ 46491943 (-)
oaz1b oaz1b coding upstream 378714 46549148 ~ 46561361 (-)
G406515 NA non-coding downstream 38741 46079142 ~ 46096671 (-)
G406155 NA non-coding downstream 67370 46067804 ~ 46068042 (-)
G406076 LOC100136563 non-coding downstream 145929 45977280 ~ 45989483 (-)
G406077 lcn2 non-coding downstream 153190 45977432 ~ 45982222 (-)
G406072 NA non-coding downstream 203956 45930040 ~ 45931456 (-)
G406566 NA non-coding upstream 292 46171809 ~ 46172156 (-)
G406574 NA non-coding upstream 25870 46197387 ~ 46202512 (-)
G406654 NA non-coding upstream 164283 46335800 ~ 46338550 (-)
G406774 NA non-coding upstream 372562 46544079 ~ 46544458 (-)
G405889 LOC106561608 other downstream 522457 45612428 ~ 45612955 (-)
G405871 NA other downstream 549229 45585648 ~ 45586183 (-)
G405292 LOC106561687 other downstream 942945 45191532 ~ 45192467 (-)
G406588 NA other upstream 48150 46219667 ~ 46234537 (-)
LOC110523962 LOC106561388 other upstream 432712 46572673 ~ 46610314 (-)
G408664 NA other upstream 2050435 48221952 ~ 48223220 (-)
G408782 sec16a other upstream 2181785 48353302 ~ 48357565 (-)
G410168 NA other upstream 3362399 49533916 ~ 49576456 (-)

Expression


Co-expression Network