mlana (mlana)


Basic Information

Item Value
gene id mlana
gene name mlana
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 46449922 ~ 46468147 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977689.1
ATGTGGGTTAACTTGCAGGACAACAACTACAGGTGGATTGTACTGTTAGTGGCTAGGTGGGACTCGCTGAGGTAAACAACTAGAGGAAAGGTTAGCTTGCGCAACGGGGACTTTAAAGGTAACCTGGAAGTGATATCGTGAAATAAGTTATATAATGCAACTTGTTGAGATTCGAGAATACATATCTGCAACAATATCAAGATTTACCTTGCCCTGACAGCATTGAACTCGCCAGTAGCTTTTCCAAAGACAAGTTGCTGTaatgataaatgaacaagtccCCACAGCACCAGAATAAATACAGTCACCAGTGCGACTCCGACGCCTTCGTGTAGCAGGCTTTTATTCTCCTAATATTGGTGCCACTCTGCATCCTTGCCACTGGTACACCTTCAAGCGTCGCTTCGGTGAACACCTGATGGATGACGAGAGGGGAAAACTTATTTCACTGCAAGGAAGTAGACGATGGTATAAATAAAATCGAAGGTGCATCAGTTCCCAGTCAATTATTGTGTAAAAGTCTGGATGGAAAGAGATGCCTCGCGGTGACTTCAACGTTTATTTTGCAAGCAGAGGAGGACAGCATGTCAGGGCCGAAGAGGCAGCTGGCATAGCTCTGTTGGTTGTAATTCTCGCAGCCCTTCTCATCGTCGGATGCTGGTATTTCAAGAGGAGAAGCGGGTACAAAATGATCAGGAGCCCAAGATCAGGGTCCCCGCCAGGATTCAGCGGAGGACAGTTCAGCCAGCGAAGAGCTGCAGCAGAAAACAAGATGGGCCTCAGTGAGCTCCGACCTGTGCTTCCCAATGCCCCTCCTGCCTATGAGAAGATCTCATCAGGACCCCTACCTCCTCCCTACTCGCCCTAATAACAACAGTCCTCTGTGGGATAACCAAAAAGATTAAACTTCATGTGTTATGTCATTAAACACATGATCAAACTTGTGAAGAACAAATATTTTGCACTCTATTCACTATCACAAGTTTATAGAAGTATTCTTccatatttaaaaaacaaaaaattgGGGGGGGGAACACTGTAGTTTCATGTTAATGTTCTGACCTTTTAGCTCCACAAGCTTTTATTTCTGAATGCTGCTCAAAGAACAAGACTTTCTATCAATCCCTGTATATCTAACATAACAATGTTGTACTTTGGAAGTTGTTTGTTCATTTCAGTGATGACTCGGCGGAAGCTAGGTTCCCAACAAACCGGATGTTCCGGTTTTCAGGAGGAATGGAAAGCGAGCCTGTGACGCAACTTCCGCTTTTGGAGGTTTACAAGGCGGCGAcgctccatcttaactcctcctccacatttactggattggttgaacagtgcagaataGAACCTCCCCGGACTATTTTTTTCCTTCTCgtcaagaccagtatgtaggggaccTAGTATCAGGTGTTtattttatgcctgctacgttaCATTAGTGACAACCAAATGTGTAGCAGCAATTGAGAATTCTTCTGAAGTTAATGACAACAGCTTACCGGCTTGATTGTTTGcttatatatttaaaaatgtacTTATGAGGATTTGGAAAGTATACATTTCAATAAAGAACTTAATTCACA
>XM_036977690.1
actccttgtccagtttgagGTGTAAAAGTCTGGATGGAAAGAGATGCCTCGCGGTGACTTCAACGTTTATTTTGCAAGCAGAGGAGGACAGCATGTCAGGGCCGAAGAGGCAGCTGGCATAGCTCTGTTGGTTGTAATTCTCGCAGCCCTTCTCATCGTCGGATGCTGGTATTTCAAGAGGAGAAGCGGGTACAAAATGATCAGGAGCCCAAGATCAGGGTCCCCGCCAGGATTCAGCGGAGGACAGTTCAGCCAGCGAAGAGCTGCAGCAGAAAACAAGATGGGCCTCAGTGAGCTCCGACCTGTGCTTCCCAATGCCCCTCCTGCCTATGAGAAGATCTCATCAGGACCCCTACCTCCTCCCTACTCGCCCTAATAACAACAGTCCTCTGTGGGATAACCAAAAAGATTAAACTTCATGTGTTATGTCATTAAACACATGATCAAACTTGTGAAGAACAAATATTTTGCACTCTATTCACTATCACAAGTTTATAGAAGTATTCTTccatatttaaaaaacaaaaaattgGGGGGGGGAACACTGTAGTTTCATGTTAATGTTCTGACCTTTTAGCTCCACAAGCTTTTATTTCTGAATGCTGCTCAAAGAACAAGACTTTCTATCAATCCCTGTATATCTAACATAACAATGTTGTACTTTGGAAGTTGTTTGTTCATTTCAGTGATGACTCGGCGGAAGCTAGGTTCCCAACAAACCGGATGTTCCGGTTTTCAGGAGGAATGGAAAGCGAGCCTGTGACGCAACTTCCGCTTTTGGAGGTTTACAAGGCGGCGAcgctccatcttaactcctcctccacatttactggattggttgaacagtgcagaataGAACCTCCCCGGACTATTTTTTTCCTTCTCgtcaagaccagtatgtaggggaccTAGTATCAGGTGTTtattttatgcctgctacgttaCATTAGTGACAACCAAATGTGTAGCAGCAATTGAGAATTCTTCTGAAGTTAATGACAACAGCTTACCGGCTTGATTGTTTGcttatatatttaaaaatgtacTTATGAGGATTTGGAAAGTATACATTTCAATAAAGAACTTAATTCACA
>XM_021603137.2
TGAGCATTCCTTTCCTCCCCTCACAGTTCTAACCTTTTCTCAAGTCAGAGATTTAAGCAAAGAAAAGTGAGACTGAGAGCTTTCGGGAAAGCGCTGAGAAGCAATTTAGAAGGACCGGACCCTTCACAATCTAATTATCTACTTTAGGTGTAAAAGTCTGGATGGAAAGAGATGCCTCGCGGTGACTTCAACGTTTATTTTGCAAGCAGAGGAGGACAGCATGTCAGGGCCGAAGAGGCAGCTGGCATAGCTCTGTTGGTTGTAATTCTCGCAGCCCTTCTCATCGTCGGATGCTGGTATTTCAAGAGGAGAAGCGGGTACAAAATGATCAGGAGCCCAAGATCAGGGTCCCCGCCAGGATTCAGCGGAGGACAGTTCAGCCAGCGAAGAGCTGCAGCAGAAAACAAGATGGGCCTCAGTGAGCTCCGACCTGTGCTTCCCAATGCCCCTCCTGCCTATGAGAAGATCTCATCAGGACCCCTACCTCCTCCCTACTCGCCCTAATAACAACAGTCCTCTGTGGGATAACCAAAAAGATTAAACTTCATGTGTTATGTCATTAAACACATGATCAAACTTGTGAAGAACAAATATTTTGCACTCTATTCACTATCACAAGTTTATAGAAGTATTCTTccatatttaaaaaacaaaaaattgGGGGGGGGAACACTGTAGTTTCATGTTAATGTTCTGACCTTTTAGCTCCACAAGCTTTTATTTCTGAATGCTGCTCAAAGAACAAGACTTTCTATCAATCCCTGTATATCTAACATAACAATGTTGTACTTTGGAAGTTGTTTGTTCATTTCAGTGATGACTCGGCGGAAGCTAGGTTCCCAACAAACCGGATGTTCCGGTTTTCAGGAGGAATGGAAAGCGAGCCTGTGACGCAACTTCCGCTTTTGGAGGTTTACAAGGCGGCGAcgctccatcttaactcctcctccacatttactggattggttgaacagtgcagaataGAACCTCCCCGGACTATTTTTTTCCTTCTCgtcaagaccagtatgtaggggaccTAGTATCAGGTGTTtattttatgcctgctacgttaCATTAGTGACAACCAAATGTGTAGCAGCAATTGAGAATTCTTCTGAAGTTAATGACAACAGCTTACCGGCTTGATTGTTTGcttatatatttaaaaatgtacTTATGAGGATTTGGAAAGTATACATTTCAATAAAGAACTTAATTCACA
>TU461004
ACAGTTCTAACCTTTTCTCAAGTCAGAGATTTAAGCAAAGAAAAGTGAGACTGAGAGCTTTCGGGAAAGCGCTGAGAAGCAATTTAGAAGGACCGGACCCTTCACAATCTAATTATCTACTTTAGGTGTAAAAGTCTGGATGGAAAGAGATGCCTCGCGGTGACTTCAACGTTTATTTTGCAAGCAGAGGAGGACAGCATGTCAGGGCCGAAGAGGCAGCTGGCATAGCTCTGTTGGTTGTAATTCTCGCAGCCCTTCTCATCGTCGGATGCTGGTATTTCAAGAGGAGAAGCGGGTACAAAATGATCAGGAGCCCAAGATCAGGGTCCCCGCCAGGATTCAGCGGAGGACAGTTCAGCCAGCGAAGAGCTGCAGCAGAAAACAAGATGGGCCTCAGTGAGCTCCGACCTGTGCTTCCCAATGCCCCTCCTGCCTATGAGAAGATCTCATCAGGACCCCTACCTCCTCCCTACTCGCCCTAATAACAACAGTCCTCTGTGGGATAACCAAAAAGATTAAACTTCATGTGTTATGTCATTAAACACATGATCAAACTTGTGAAGAACAAATATTTTGCACTCTATTCACTATCACAAGTTTATAGAAGTATTCTTccatatttaaaaaacaaaaaattgGGGGGGGGAACACTGTAGTTTCATGTTAATGTTCTGACCTTTTAGCTCCACAAGCTTTTATTTCTGAATGCTGCTCAAAGAACAAGACTTTCTATCAATCCCTGTATATCTAACATAACAATGTTGTACTTTGGAAGTTGTTTGTTCATTTCAGTGATGACTCGGCGGAAGCTAGGTTCCCAACAAACCGGATGTTCCGGTTTTCAGGAGGAATGGAAAGCGAGCCTGTGACGCAACTTCCGCTTTTGGAGGTTTACAAGGCGGCGAcgctccatcttaactcctcctccacatttactggattggttgaacagtgcagaataGAACCTCCCCGGACTATTTTTTTCCTTCTCgtcaagaccagtatgtaggggaccTAGTATCAGGTGTTtattttatgcctgctacgttaCATTAGTGACAACCAAATGTGTAGCAGCAATTGAGAATTCTTCTGAAGTTAATGACAACAGCTTACCGGCTTGATTGTTTGcttatatatttaaaaatgtacTTATGAGGATTTGGAAAGTATACATTTCAATAAAGAACTTAATTCACATGAACGCCACAAAACTCTTATGGAGGACAGTCGCACCATTTATTTCCATGCAGAAATGTCCACAGTTATCCAATGACAATGTACCCGCTAAATATTTTGAGAAATCTATgataggaaaaataaataaatataacttCC

Function

symbol description
mlana Orthologous to human MLANA (melan-A).

NR:

description
melanoma antigen recognized by T-cells 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977689.1 False 1586 mRNA 0.43 6 46449922 46468009
XM_036977690.1 False 1094 mRNA 0.43 5 46455866 46468009
XM_021603137.2 False 1222 mRNA 0.43 5 46464994 46468009
TU461004 True 1338 TUCP 0.42 5 46465016 46468147
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110523956 ric1 coding upstream 44169 46343166 ~ 46405753 (+)
LOC110523955 LOC106561458 coding upstream 111369 46320861 ~ 46338553 (+)
LOC110523953 jak2 coding upstream 149346 46223154 ~ 46300576 (+)
rcl1 rcl1 coding upstream 257605 46173552 ~ 46192414 (+)
LOC110523951 cdc37l1 coding upstream 315285 46115563 ~ 46134637 (+)
LOC110523961 uhrf2 coding downstream 30179 46498188 ~ 46547271 (+)
LOC118964751 NA coding downstream 163515 46631524 ~ 46631576 (+)
LOC110523963 LOC106561387 coding downstream 258061 46726070 ~ 46738498 (+)
LOC110523964 LOC106561374 coding downstream 330516 46798525 ~ 46894485 (+)
LOC110523965 rd23a coding downstream 443093 46911102 ~ 46926945 (+)
G406224 plgrkt non-coding upstream 141754 46306364 ~ 46308168 (+)
G406267 NA non-coding upstream 200197 46249391 ~ 46249725 (+)
G406238 NA non-coding upstream 244069 46205638 ~ 46205853 (+)
G406237 NA non-coding upstream 244479 46205018 ~ 46205443 (+)
G406236 NA non-coding upstream 245671 46203069 ~ 46204251 (+)
G406330 NA non-coding downstream 49948 46517957 ~ 46550435 (+)
G406400 LOC106561388 non-coding downstream 107485 46575494 ~ 46575769 (+)
G406407 LOC106561388 non-coding downstream 109836 46577845 ~ 46578915 (+)
G406408 NA non-coding downstream 111822 46579831 ~ 46580083 (+)
G406409 NA non-coding downstream 112380 46580389 ~ 46580859 (+)
LOC110523937 LOC106605670 other upstream 879365 45567600 ~ 45571386 (+)
G404248 NA other upstream 1847408 44590612 ~ 44606497 (+)
LOC110523907 LOC105026675 other upstream 2149214 44296870 ~ 44301434 (+)
G402305 NA other upstream 3226542 43042605 ~ 43245654 (+)
G402133 NA other upstream 3734131 42714873 ~ 42715791 (+)
G406401 NA other downstream 96882 46564891 ~ 46565605 (+)
G406484 NA other downstream 214854 46682863 ~ 46683119 (+)
LOC110523971 LOC106561271 other downstream 752451 47220417 ~ 47229083 (+)
G407442 NA other downstream 982790 47450799 ~ 47451146 (+)
G408135 NA other downstream 1280804 47748813 ~ 47754194 (+)
G406361 NA non-coding upstream 13019 46451547 ~ 46451997 (+)

Expression

mlana(mlana) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
End of interactive chart.

mlana(mlana) Expression in each Bioproject

Bar chart with 21 bars.
mlana(mlana) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network