LOC110522868


Basic Information

Item Value
gene id LOC110522868
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 46488415 ~ 46491943 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473381.2
GGGGCTctacgtgtttgagggtgtgagttggaagcagacgttacaaccAAAGCAAGGTTTCTCAAACAACTGTGTGTTTGTTGTGATGTATGCTCTGTACATTGCAATGGAGCACAGTGTGATTTCACtgagCAAATTAGGCGATGGTGGTGCCCAGTTCTCCTGCAGAACTTTCCCATGCCGATGATGTAGAAGATGTCCCCCGTCCCCTCCAAGAAGTCACATCATGTCACATTAGCATCCAGCTCTGCAGGATCAGATGATATTGAAAGCAAAATGCACGGAGAACTGGGAGCTGTGAACTGGGAAGCAGATGTTCTTCTAAGGGACACCCTAGAGGCAGCAAAGTGGCGCGAACTCCAAACACTTAAAGGCACTGTTTCCCTCCCTAGTATAATTGGGATGGACGGGGAAGACCGCATTACAACCCTTAAAGAACTACGGTTGTATGATGGCCTGGACGAAGAAGAAAATATTATCCCCAAGGAACCCTTCATGttacagagagatgatgagatGTTCTATGTGGAGGCAGTTGACAACAAGAAAATGACTGTCTTTGCCTCTTGAGGAACAGGGTTGAAGCCATTTTTGAGGACTGGTCAAACCTTGTTTTTGTCTGCTGTGTTAATTGTTTCAattgtgttattttgtttagtaaaGATGACGTAGAGTCTCTGATCTCTTTACTGGAGTTGGTCTAACTTAATGTACAAAGCACATTTAGCTTGTCAGTATGTCTACATGGTATAGTCTGTCTCCATTCTCATGAGGAAagtaaatagcattataaatcagGATAGgtagcaagtgtgtgtgtgtgtatatatactcaaATAATATAATCACAAAGTTATAACATTTACCAACACCATTTTAACATGACATACATAACAAGTATGTTGTTCACTGCATCAATATCAGTAGCTTGTCTCAAATATAGCATGGAGCAAAAAGTGTTACAACACATCTGCTGGTACCACTTTATATAATATTTCTTACAATCTTCAAAAATGAAATGCATTTGTGTGCCTTCAACGTGTGCCTTGCGCAAACGTGTGTGCTTTGTATTCAGTGTCTGACTGTCAAACCTCCAGATGGACACATTTTGGTTGGCCTCGAATTGCACACTGCAGTCAGGGGCTCTTGACAGGCTCTGAGATTAAATACGGACAATGATGTCGAGCTCCTATTGCACAGCActagcctactgtagcctaccct
>XR_005051581.1
GGGGCTctacgtgtttgagggtgtgagttggaagcagacgttacaaccAAAGCAAGGTTTCTCAAACAACTGTGTGTTTGTTGTGATGTATGCTCTGTACATTGCAATGGAGCACAGTGTGATTTCACtgagCAAATTAGGCGATGGTGGTGCCCAGTTCTCCTGCAGAACTTTCCCATGCCGTCTGAAGAAGAGAGGTTGAAAGAACGGAAACCAAAACACTACAGGATGATGTAGAAGATGTCCCCCGTCCCCTCCAAGAAGTCACATCATGTCACATTAGCATCCAGCTCTGCAGGATCAGATGATATTGAAAGCAAAATGCACGGAGAACTGGGAGCTGTGAACTGGGAAGCAGATGTTCTTCTAAGGGACACCCTAGAGGCAGCAAAGTGGCGCGAACTCCAAACACTTAAAGGCACTGTTTCCCTCCCTAGTATAATTGGGATGGACGGGGAAGACCGCATTACAACCCTTAAAGAACTACGGTTGTATGATGGCCTGGACGAAGAAGAAAATATTATCCCCAAGGAACCCTTCATGttacagagagatgatgagatGTTCTATGTGGAGGCAGTTGACAACAAGAAAATGACTGTCTTTGCCTCTTGAGGAACAGGGTTGAAGCCATTTTTGAGGACTGGTCAAACCTTGTTTTTGTCTGCTGTGTTAATTGTTTCAattgtgttattttgtttagtaaaGATGACGTAGAGTCTCTGATCTCTTTACTGGAGTTGGTCTAACTTAATGTACAAAGCACATTTAGCTTGTCAGTATGTCTACATGGTATAGTCTGTCTCCATTCTCATGAGGAAagtaaatagcattataaatcagGATAGgtagcaagtgtgtgtgtgtgtatatatactcaaATAATATAATCACAAAGTTATAACATTTACCAACACCATTTTAACATGACATACATAACAAGTATGTTGTTCACTGCATCAATATCAGTAGCTTGTCTCAAATATAGCATGGAGCAAAAAGTGTTACAACACATCTGCTGGTACCACTTTATATAATATTTCTTACAATCTTCAAAAATGAAATGCATTTGTGTGCCTTCAACGTGTGCCTTGCGCAAACGTGTGTGCTTTGTATTCAGTGTCTGACTGTCAAACCTCCAGATGGACACATTTTGGTTGGCCTCGAATTGCACACTGCAGTCAGGGGCTCTTGACAGGCTCTGAGATTAAATACGGACAATGATGTCGAGCTCCTATTGCACAGCActagcctactgtagcctaccct
>XR_002473382.2
TTGAGGTAAACGTAGAAGGTATCAACGTCCACGAAATCTAATCTTAATCGAACCTAACCTACATGGATACAAATATAAACCATGGCATATGCTCTGTACATTGCAATGGAGCACAGTGTGATTTCACtgagCAAATTAGGCGATGGTGGTGCCCAGTTCTCCTGCAGAACTTTCCCATGCCGATGATGTAGAAGATGTCCCCCGTCCCCTCCAAGAAGTCACATCATGTCACATTAGCATCCAGCTCTGCAGGATCAGATGATATTGAAAGCAAAATGCACGGAGAACTGGGAGCTGTGAACTGGGAAGCAGATGTTCTTCTAAGGGACACCCTAGAGGCAGCAAAGTGGCGCGAACTCCAAACACTTAAAGGCACTGTTTCCCTCCCTAGTATAATTGGGATGGACGGGGAAGACCGCATTACAACCCTTAAAGAACTACGGTTGTATGATGGCCTGGACGAAGAAGAAAATATTATCCCCAAGGAACCCTTCATGttacagagagatgatgagatGTTCTATGTGGAGGCAGTTGACAACAAGAAAATGACTGTCTTTGCCTCTTGAGGAACAGGGTTGAAGCCATTTTTGAGGACTGGTCAAACCTTGTTTTTGTCTGCTGTGTTAATTGTTTCAattgtgttattttgtttagtaaaGATGACGTAGAGTCTCTGATCTCTTTACTGGAGTTGGTCTAACTTAATGTACAAAGCACATTTAGCTTGTCAGTATGTCTACATGGTATAGTCTGTCTCCATTCTCATGAGGAAagtaaatagcattataaatcagGATAGgtagcaagtgtgtgtgtgtgtatatatactcaaATAATATAATCACAAAGTTATAACATTTACCAACACCATTTTAACATGACATACATAACAAGTATGTTGTTCACTGCATCAATATCAGTAGCTTGTCTCAAATATAGCATGGAGCAAAAAGTGTTACAACACATCTGCTGGTACCACTTTATATAATATTTCTTACAATCTTCAAAAATGAAATGCATTTGTGTGCCTTCAACGTGTGCCTTGCGCAAACGTGTGTGCTTTGTATTCAGTGTCTGACTGTCAAACCTCCAGATGGACACATTTTGGTTGGCCTCGAATTGCACACTGCAGTCAGGGGCTCTTGACAGGCTCTGAGATTAAATACGGACAATGATGTCGAGCTCCTATTGCACAGCActagcctactgtagcctaccct

Function

NR:

description
uncharacterized protein LOC111197416

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473381.2 False 1224 mRNA 0.42 6 46488415 46490617
XR_005051581.1 False 1269 mRNA 0.42 7 46488415 46490617
XR_002473382.2 True 1223 mRNA 0.42 6 46488415 46491943

Neighbor

gene id symbol gene type direction distance location
LOC110523959 kiaa2026 coding downstream 7919 46468035 ~ 46480496 (-)
LOC110523958 ermp1 coding downstream 37985 46410956 ~ 46450430 (-)
LOC110523954 plgrkt coding downstream 165897 46301812 ~ 46322518 (-)
LOC110523952 LOC106568444 coding downstream 316898 46135412 ~ 46171517 (-)
LOC110523950 LOC106561514 coding downstream 464838 46019698 ~ 46023840 (-)
oaz1b oaz1b coding upstream 58288 46549148 ~ 46561361 (-)
LOC110523962 LOC106561388 coding upstream 80730 46572673 ~ 46610314 (-)
nop14 nop14 coding upstream 636658 47128601 ~ 47161462 (-)
add1 LOC106561289 coding upstream 671802 47163745 ~ 47217644 (-)
LOC110523973 ctif coding upstream 1038479 47530422 ~ 47662670 (-)
G406654 NA non-coding downstream 149865 46335800 ~ 46338550 (-)
G406574 NA non-coding downstream 285903 46197387 ~ 46202512 (-)
G406566 NA non-coding downstream 316259 46171809 ~ 46172156 (-)
G406515 NA non-coding downstream 391744 46079142 ~ 46096671 (-)
G406155 NA non-coding downstream 420373 46067804 ~ 46068042 (-)
G406774 NA non-coding upstream 52136 46544079 ~ 46544458 (-)
G406782 NA non-coding upstream 71093 46563036 ~ 46563305 (-)
G406783 NA non-coding upstream 71520 46563463 ~ 46563698 (-)
G406588 NA other downstream 253878 46219667 ~ 46234537 (-)
G406076 LOC100136563 other downstream 498932 45977280 ~ 45989483 (-)
G405889 LOC106561608 other downstream 875460 45612428 ~ 45612955 (-)
G405871 NA other downstream 902232 45585648 ~ 45586183 (-)
G408664 NA other upstream 1730009 48221952 ~ 48223220 (-)
G408782 sec16a other upstream 1861359 48353302 ~ 48357565 (-)
G410168 NA other upstream 3041973 49533916 ~ 49576456 (-)
G411459 NA other upstream 4126948 50618891 ~ 50619175 (-)

Expression


Co-expression Network