Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110523963 |
| gene name | LOC106561387 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 46726070 ~ 46738498 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| trimeric intracellular cation channel type B-like isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0055085 | transmembrane transport | biological_process |
| GO:0006811 | ion transport | biological_process |
| id | description |
|---|---|
| K24013 | TMEM38, TRIC; trimeric intracellular cation channel |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021603141.2 | True | 2038 | mRNA | 0.48 | 6 | 46726070 | 46738498 |
46,722,000
46,724,000
46,726,000
46,728,000
46,730,000
46,732,000
46,734,000
46,736,000
46,738,000
46,740,000
46,742,000
46,744,000
46,746,000
46,748,000
46,750,000
NC_048569.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118964751 | NA | coding | upstream | 94494 | 46631524 ~ 46631576 (+) |
| LOC110523961 | uhrf2 | coding | upstream | 178799 | 46498188 ~ 46547271 (+) |
| mlana | mlana | coding | upstream | 258061 | 46449922 ~ 46468147 (+) |
| LOC110523956 | ric1 | coding | upstream | 320317 | 46343166 ~ 46405753 (+) |
| LOC110523955 | LOC106561458 | coding | upstream | 387517 | 46320861 ~ 46338553 (+) |
| LOC110523964 | LOC106561374 | coding | downstream | 60027 | 46798525 ~ 46894485 (+) |
| LOC110523965 | rd23a | coding | downstream | 172604 | 46911102 ~ 46926945 (+) |
| LOC110523966 | LOC106561364 | coding | downstream | 300687 | 47039185 ~ 47056548 (+) |
| LOC110523967 | LOC106561354 | coding | downstream | 351796 | 47090294 ~ 47108016 (+) |
| LOC110523969 | LOC106561351 | coding | downstream | 386279 | 47124777 ~ 47127285 (+) |
| G406511 | NA | non-coding | upstream | 4364 | 46721417 ~ 46721706 (+) |
| G406476 | NA | non-coding | upstream | 50765 | 46675024 ~ 46675305 (+) |
| G406473 | NA | non-coding | upstream | 52476 | 46673383 ~ 46673594 (+) |
| G406468 | NA | non-coding | upstream | 58437 | 46667393 ~ 46667633 (+) |
| G406467 | NA | non-coding | upstream | 61696 | 46664112 ~ 46664374 (+) |
| G406906 | NA | non-coding | downstream | 10837 | 46749335 ~ 46749567 (+) |
| G406926 | NA | non-coding | downstream | 23121 | 46761619 ~ 46761845 (+) |
| G407135 | NA | non-coding | downstream | 200613 | 46939111 ~ 46943603 (+) |
| G407136 | NA | non-coding | downstream | 203315 | 46941813 ~ 46946355 (+) |
| G407206 | NA | non-coding | downstream | 326646 | 47065144 ~ 47065344 (+) |
| G406484 | NA | other | upstream | 42951 | 46682863 ~ 46683119 (+) |
| G406401 | NA | other | upstream | 160465 | 46564891 ~ 46565605 (+) |
| LOC110523937 | LOC106605670 | other | upstream | 1155513 | 45567600 ~ 45571386 (+) |
| G404248 | NA | other | upstream | 2123556 | 44590612 ~ 44606497 (+) |
| LOC110523971 | LOC106561271 | other | downstream | 481962 | 47220417 ~ 47229083 (+) |
| G407442 | NA | other | downstream | 712301 | 47450799 ~ 47451146 (+) |
| G408135 | NA | other | downstream | 1010315 | 47748813 ~ 47754194 (+) |
| G408177 | NA | other | downstream | 1083092 | 47821590 ~ 47827475 (+) |
| G408222 | NA | other | downstream | 1298128 | 48036626 ~ 48039093 (+) |
