LOC110523965 (rd23a)


Basic Information

Item Value
gene id LOC110523965
gene name rd23a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 46911102 ~ 46926945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603146.2
cacacagtaggtggcggcataaTACCAGAGCAGCAGCCTATGACGAGCTAGCGAAAATAGCATCAAATCTAACTACACCTTCGGAAAGAGTACGGGGTGAAACAAGTTAAGAAACCTAAGCTAAATTGCTCGCCGCCAAAATGCAGATAACATTAAAAACTCTCCAACAGCAGACATTTAAAATCGACATAGACGCAGAGGAGACGGTAAAAACCTTAAAGGAAAAAATTGAGAATGAGAAGGGAAAAGATGGTTTTCCGGTTGCTGGACAAAAGTTGATATATGCAGGGAAAATCCTAAATGATGACACAGCCCTCAAGGAGTATAAGATTGATGAGAAGAACTTTGTGGTCGTCATGGTGGCAAAGCCTAAAGCAGCCCCAGCAGCTGCCCAGCCTTCCAGCGCTACCACGACCACCACCTCCAGCACTACAGTCCCCACAGTACccgctgctgccttgtcaggctCAGATAACCCACCCGAGGGGGGCAAACCAGAGGACAAACCAGCTGAGGAGAGGCCCTCCAACACCTCAGCCCCAGCATCAACTCCAACCAGTTCGTCTGATCTCTTGGCCAATGTGAACATGTTCGAGGAGGCAACTTCTGCTCTAGTGACAGGCCAATCATATGAGAACATGGTGACCGAGATGATGCTGATGGGCTATGAGAGGGAGCAGGTGGTGGCATCACTCCGAGCCAGCTTCAACAACCCAGACAGAGCTGTGGAGTACCTGCTTACAGGGATCCCAGCTGGGGAGGAGGGCCATGTGAGTGCTGACCCAGTGGTGCCCCCTGTGGGTGGAGGAACTCCAGCTCTGAACACTGGCAGTATGACCACCCCAGCCAGCACAGGCTCCCTAGCCAGCGCTGCaacaggagCCAACCCTCTGGGGTTCCTGGTTAACCAGCCCCAGTTTCTCCAGATGAGACAGATCATCCAGCAAAACCCCTCTCTGCTCCCTGCCTTACTACAGCAGATAGGGAGGGAGAACCCCCAGCTTCTGCAACAAATCAGCAGCCACCAAGAGCAGTTCATCCAGATGCTGAACGAGCCAGCCCAGGAGGGgggtcagggaggaggaggagtaggtggtggtggtggtggaggaggtgttggAGTGGGGGTCGGTGGGGAGGCTGGAAGTGGCATGAACTATATTCAGGTCACACCCCAGGAGAAGGAGGCCATTGAGAGGCTAAAAGCCCTAGGATTCCCTGAAGGACTTGTTATACAGGCCTACTTTGCCTGTGAGAAGAATGAGAACTTGGCCGCTAACTTCCTCTTACAGCAGAATTTTGACGATGACTAAAAAGGGAGCCATGATAGTCATTTCGGTCCttatttttttttctctactTTTTGATTGATCAATATTGGATGAGCATAAATAAAACATGGCCTTCGCATTTTCCCAAATTTTACTACAAAATACATGatacatatttttttgtgaaataaAAGCTGTTACTCTGATCACCTTCCTTGAGTTAAAGCTACTTGGTTCATCAGATATCACCTGTGTGCTACccgtttgtttatttttttatttggctaAAGACCAACATGATTGTTTCTCATAAGGAAATTAATACTGGTTTTAAAGGTTGATCGCAGAATGTAGTTATAAGAGGAGTAGTTATACAAGTATGTGATTGGGCCATTTGTTATTGCATATTCATATACATCATTGTTCTTGTTTGATAGTGTTTTTCTTTGTCTCAATTGACCAGTATAGGGATCCCAGTACATAATAAAAACTGCagttttaaattacatttttaaacAAGCAACATTGTTATTTTgctattttcatattttttgttaAACTTCCAACAAACTTAAAGTGAATTGCATGAGCTACAGCAGATTTAAAAAAGGCAACTGTACAAATATGGGAAGTACTGATGTTTCATGCAGCCTGAAAATAGCAAATTATCCTAGTTCTTTCAGACCTCTAAAGGTATGTATATGACTTCCGTAGCTCATAGTAGCCTTGTGTTTACAGTTACTATCCACTTGATTTACTGTCATTTTTACAAAGAAATAAAACGTTTCAACAGAGTAA
>XM_036977697.1
GTTGGCTAACAAGCTAAGCTAACTTGCATTCTTAGCTAGTTTGACAtggctggctaacgttagcaaaGCAACTTCAACATGTTTAAGTCCTCAGTCAAGTAACTAGATAACGTTGGTAAAAACCTTAAAGGAAAAAATTGAGAATGAGAAGGGAAAAGATGGTTTTCCGGTTGCTGGACAAAAGTTGATATATGCAGGGAAAATCCTAAATGATGACACAGCCCTCAAGGAGTATAAGATTGATGAGAAGAACTTTGTGGTCGTCATGGTGGCAAAGCCTAAAGCAGCCCCAGCAGCTGCCCAGCCTTCCAGCGCTACCACGACCACCACCTCCAGCACTACAGTCCCCACAGTACccgctgctgccttgtcaggctCAGATAACCCACCCGAGGGGGGCAAACCAGAGGACAAACCAGCTGAGGAGAGGCCCTCCAACACCTCAGCCCCAGCATCAACTCCAACCAGTTCGTCTGATCTCTTGGCCAATGTGAACATGTTCGAGGAGGCAACTTCTGCTCTAGTGACAGGCCAATCATATGAGAACATGGTGACCGAGATGATGCTGATGGGCTATGAGAGGGAGCAGGTGGTGGCATCACTCCGAGCCAGCTTCAACAACCCAGACAGAGCTGTGGAGTACCTGCTTACAGGGATCCCAGCTGGGGAGGAGGGCCATGTGAGTGCTGACCCAGTGGTGCCCCCTGTGGGTGGAGGAACTCCAGCTCTGAACACTGGCAGTATGACCACCCCAGCCAGCACAGGCTCCCTAGCCAGCGCTGCaacaggagCCAACCCTCTGGGGTTCCTGGTTAACCAGCCCCAGTTTCTCCAGATGAGACAGATCATCCAGCAAAACCCCTCTCTGCTCCCTGCCTTACTACAGCAGATAGGGAGGGAGAACCCCCAGCTTCTGCAACAAATCAGCAGCCACCAAGAGCAGTTCATCCAGATGCTGAACGAGCCAGCCCAGGAGGGgggtcagggaggaggaggagtaggtggtggtggtggtggaggaggtgttggAGTGGGGGTCGGTGGGGAGGCTGGAAGTGGCATGAACTATATTCAGGTCACACCCCAGGAGAAGGAGGCCATTGAGAGGCTAAAAGCCCTAGGATTCCCTGAAGGACTTGTTATACAGGCCTACTTTGCCTGTGAGAAGAATGAGAACTTGGCCGCTAACTTCCTCTTACAGCAGAATTTTGACGATGACTAAAAAGGGAGCCATGATAGTCATTTCGGTCCttatttttttttctctactTTTTGATTGATCAATATTGGATGAGCATAAATAAAACATGGCCTTCGCATTTTCCCAAATTTTACTACAAAATACATGatacatatttttttgtgaaataaAAGCTGTTACTCTGATCACCTTCCTTGAGTTAAAGCTACTTGGTTCATCAGATATCACCTGTGTGCTACccgtttgtttatttttttatttggctaAAGACCAACATGATTGTTTCTCATAAGGAAATTAATACTGGTTTTAAAGGTTGATCGCAGAATGTAGTTATAAGAGGAGTAGTTATACAAGTATGTGATTGGGCCATTTGTTATTGCATATTCATATACATCATTGTTCTTGTTTGATAGTGTTTTTCTTTGTCTCAATTGACCAGTATAGGGATCCCAGTACATAATAAAAACTGCagttttaaattacatttttaaacAAGCAACATTGTTATTTTgctattttcatattttttgttaAACTTCCAACAAACTTAAAGTGAATTGCATGAGCTACAGCAGATTTAAAAAAGGCAACTGTACAAATATGGGAAGTACTGATGTTTCATGCAGCCTGAAAATAGCAAATTATCCTAGTTCTTTCAGACCTCTAAAGGTATGTATATGACTTCCGTAGCTCATAGTAGCCTTGTGTTTACAGTTACTATCCACTTGATTTACTGTCATTTTTACAAAGAAATAAAACGTTTCAACAGAGTAA

Function

NR:

description
UV excision repair protein RAD23 homolog B-like

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0003684 damaged DNA binding molecular_function

KEGG:

id description
K10839 RAD23, HR23; UV excision repair protein RAD23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603146.2 False 2069 mRNA 0.45 10 46911102 46926945
XM_036977697.1 True 1978 mRNA 0.45 10 46911367 46926945
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110523964 LOC106561374 coding upstream 16617 46798525 ~ 46894485 (+)
LOC110523963 LOC106561387 coding upstream 172604 46726070 ~ 46738498 (+)
LOC118964751 NA coding upstream 279526 46631524 ~ 46631576 (+)
LOC110523961 uhrf2 coding upstream 363831 46498188 ~ 46547271 (+)
mlana mlana coding upstream 443093 46449922 ~ 46468147 (+)
LOC110523966 LOC106561364 coding downstream 112240 47039185 ~ 47056548 (+)
LOC110523967 LOC106561354 coding downstream 163349 47090294 ~ 47108016 (+)
LOC110523969 LOC106561351 coding downstream 197832 47124777 ~ 47127285 (+)
LOC110523971 LOC106561271 coding downstream 293472 47220417 ~ 47229083 (+)
LOC110523972 LOC106561256 coding downstream 302713 47229658 ~ 47374110 (+)
G406926 NA non-coding upstream 149257 46761619 ~ 46761845 (+)
G406906 NA non-coding upstream 161535 46749335 ~ 46749567 (+)
G406511 NA non-coding upstream 189396 46721417 ~ 46721706 (+)
G406476 NA non-coding upstream 235797 46675024 ~ 46675305 (+)
G406473 NA non-coding upstream 237508 46673383 ~ 46673594 (+)
G407135 NA non-coding downstream 12166 46939111 ~ 46943603 (+)
G407136 NA non-coding downstream 14868 46941813 ~ 46946355 (+)
G407206 NA non-coding downstream 138199 47065144 ~ 47065344 (+)
G407215 NA non-coding downstream 153039 47079984 ~ 47080324 (+)
G407216 NA non-coding downstream 153856 47080801 ~ 47081109 (+)
G406484 NA other upstream 227983 46682863 ~ 46683119 (+)
G406401 NA other upstream 345497 46564891 ~ 46565605 (+)
LOC110523937 LOC106605670 other upstream 1340545 45567600 ~ 45571386 (+)
G404248 NA other upstream 2308588 44590612 ~ 44606497 (+)
G407442 NA other downstream 523854 47450799 ~ 47451146 (+)
G408135 NA other downstream 821868 47748813 ~ 47754194 (+)
G408177 NA other downstream 894645 47821590 ~ 47827475 (+)
G408222 NA other downstream 1109681 48036626 ~ 48039093 (+)

Expression

LOC110523965(rd23a) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 125.
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LOC110523965(rd23a) Expression in each Bioproject

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LOC110523965(rd23a) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network