LOC110523967 (LOC106561354)


Basic Information

Item Value
gene id LOC110523967
gene name LOC106561354
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 47090294 ~ 47108016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603151.2
GCAGACAGTAAAGCAGCCATTCTATCTCGAGCTCTCCCAGCATCAGCACCACGGAATTACGAGCAATCTCTGTCTGCTTCTGAAACGGAGAAGAGTATCGGTTTCAAACCTGCAGGGCGAAATCTAGACAAGGCGACACGGATTTCAGTGTCGAAAGGGGAAGTTGGAAGGCAAATAACAGCTGTCGCTGTGTCATTTTGGACACCATGGACGCGCTAATGAAGGGGTTCTCGAAAGCCAAGGATGGGGTCGTGGCAGCAGCGGAGAAGACGAAGCAGGGAGTAACTGGGGCGGCTGAGATGACAAAAGGTGGCGTTATCTTTGTCGGCAACAAAACAAAGGATGGAGtcacaacagTTGCAGGTAAAACAGTGTCTGGCGTTTCCCAGGTGGGCGGAGCCATGGTAACAGGTGTGACAGCAGTGGCTCACAGGACTGTGGAGGGGGCGGGGAATATTGCTGCTGCGACTGGATTGGTCAAGAAAGACACAGCCAAACAGGATGAAGATACTATGTCTAAAGACTCACCTATCAAGGAGTCACCAGTGGACCCAGAGGGTGGTGATACTGCTGCAGAGGAGGATTCCGATGGCTATTAGAAGTACAGCACTGTCAAGTGCCTCATCTCAGAACATTCCAGAACTACTGTAACAATCCAGAATCAACTATCAAAACATTCCATGTCACCCTGCCAAGTCCGGTTGTGCCTCGTTGTGTTCCTTAATGGAGTCTGTACCGTGCGTGTGCGTatgactctgtgtgtgtatctattagtgtgtgtgtaacctgtgtaTGGGTGTGTCTTAATGCTTAGTGGGTGtacgccagtgtgtgtgtgtgtgtgggtcagtgTGTGTCCTGGAGTCTCCGTCAGTCAGTCCTGAGTGGGGTCTATACGCCCATCTTCAGTAACTCCCTCCCACTAAGGCAGCCACCTGGACACAGAAGGGACTACCTTTAtgttctgtctatctgtctgtggaCTTTGAAGTAAATACAAATACTGTAAACAGGACGGTGTCCGCCCACTCTGCTCCGAGGGTGggaaaacgcatgtttttttgGTGATGACATGTCACTTCCTTATGTTATAAAATAAATTAAaccaagacaaatatga
>XM_021603154.2
GTAAAGCAGCCATTCTATCTCGAGCTCTCCCAGCATCAGCACCACGGAATTACGAGCAATCTCTGTCTGCTTCTGAAACGGAGAAGAGTATCGGTTTCAAACCTGCAGGGCGAAATCTAGACAAGGCGACACGGATTTCAGTGTCGAAAGGGGAAGTTGGAAGGCAAATAACAGCTGTCGCTGTGTCATTTTGGACACCATGGACGCGCTAATGAAGGGGTTCTCGAAAGCCAAGGATGGGGTCGTGGCAGCAGCGGAGAAGACGAAGCAGGGAGTAACTGGGGCGGCTGAGATGACAAAAGGTGGCGTTATCTTTGTCGTTGCAGGTAAAACAGTGTCTGGCGTTTCCCAGGTGGGCGGAGCCATGGTAACAGGTGTGACAGCAGTGGCTCACAGGACTGTGGAGGGGGCGGGGAATATTGCTGCTGCGACTGGATTGGTCAAGAAAGACACAGCCAAACAGGATGAAGATACTATGTCTAAAGACTCACCTATCAAGGAGTCACCAGTGGACCCAGAGGGTGGTGATACTGCTGCAGAGGAGGATTCCGATGGCTATTAGAAGTACAGCACTGTCAAGTGCCTCATCTCAGAACATTCCAGAACTACTGTAACAATCCAGAATCAACTATCAAAACATTCCATGTCACCCTGCCAAGTCCGGTTGTGCCTCGTTGTGTTCCTTAATGGAGTCTGTACCGTGCGTGTGCGTatgactctgtgtgtgtatctattagtgtgtgtgtaacctgtgtaTGGGTGTGTCTTAATGCTTAGTGGGTGtacgccagtgtgtgtgtgtgtgtgggtcagtgTGTGTCCTGGAGTCTCCGTCAGTCAGTCCTGAGTGGGGTCTATACGCCCATCTTCAGTAACTCCCTCCCACTAAGGCAGCCACCTGGACACAGAAGGGACTACCTTTAtgttctgtctatctgtctgtggaCTTTGAAGTAAATACAAATACTGTAAACAGGACGGTGTCCGCCCACTCTGCTCCGAGGGTGggaaaacgcatgtttttttgGTGATGACATGTCACTTCCTTATGTTATAAAATAAATTAAaccaagacaaatatga
>XM_036977700.1
GTAAAGCAGCCATTCTATCTCGAGCTCTCCCAGCATCAGCACCACGGAATTACGAGCAATCTCTGTCTGCTTCTGAAACGGAGAAGAGTATCGGTTTCAAACCTGCAGGGCGAAATCTAGACAAGGCGACACGGATTTCAGTGTCGAAAGGGGAAGTTGGAAGGCAAATAACAGCTGTCGCTGTGTCATTTTGGACACCATGGACGCGCTAATGAAGGGGTTCTCGAAAGCCAAGGATGGGGTCGTGGCAGCAGCGGAGAAGACGAAGCAGGGAGTAACTGGGGCGGCTGAGATGACAAAAGGCAACAAAACAAAGGATGGAGtcacaacagTTGCAGGTAAAACAGTGTCTGGCGTTTCCCAGGTGGGCGGAGCCATGGTAACAGGTGTGACAGCAGTGGCTCACAGGACTGTGGAGGGGGCGGGGAATATTGCTGCTGCGACTGGATTGGTCAAGAAAGACACAGCCAAACAGGATGAAGATACTATGTCTAAAGACTCACCTATCAAGGAGTCACCAGTGGACCCAGAGGGTGGTGATACTGCTGCAGAGGAGGATTCCGATGGCTATTAGAAGTACAGCACTGTCAAGTGCCTCATCTCAGAACATTCCAGAACTACTGTAACAATCCAGAATCAACTATCAAAACATTCCATGTCACCCTGCCAAGTCCGGTTGTGCCTCGTTGTGTTCCTTAATGGAGTCTGTACCGTGCGTGTGCGTatgactctgtgtgtgtatctattagtgtgtgtgtaacctgtgtaTGGGTGTGTCTTAATGCTTAGTGGGTGtacgccagtgtgtgtgtgtgtgtgggtcagtgTGTGTCCTGGAGTCTCCGTCAGTCAGTCCTGAGTGGGGTCTATACGCCCATCTTCAGTAACTCCCTCCCACTAAGGCAGCCACCTGGACACAGAAGGGACTACCTTTAtgttctgtctatctgtctgtggaCTTTGAAGTAAATACAAATACTGTAAACAGGACGGTGTCCGCCCACTCTGCTCCGAGGGTGggaaaacgcatgtttttttgGTGATGACATGTCACTTCCTTATGTTATAAAATAAATTAAaccaagacaaatatga
>XM_036977701.1
GTAAAGCAGCCATTCTATCTCGAGCTCTCCCAGCATCAGCACCACGGAATTACGAGCAATCTCTGTCTGCTTCTGAAACGGAGAAGAGTATCGGTTTCAAACCTGCAGGGCGAAATCTAGACAAGGCGACACGGATTTCAGTGTCGAAAGGGGAAGTTGGAAGGCAAATAACAGGTGCGCAAACAATCCACAGCTGTCGCTGTGTCATTTTGGACACCATGGACGCGCTAATGAAGGGGTTCTCGAAAGCCAAGGATGGGGTCGTGGCAGCAGCGGAGAAGACGAAGCAGGGAGTAACTGGGGCGGCTGAGATGACAAAAGGCAACAAAACAAAGGATGGAGtcacaacagTTGCAGGTAAAACAGTGTCTGGCGTTTCCCAGGTGGGCGGAGCCATGGTAACAGGTGTGACAGCAGTGGCTCACAGGACTGTGGAGGGGGCGGGGAATATTGCTGCTGCGACTGGATTGGTCAAGAAAGACACAGCCAAACAGGATGAAGATACTATGTCTAAAGACTCACCTATCAAGGAGTCACCAGTGGACCCAGAGGGTGGTGATACTGCTGCAGAGGAGGATTCCGATGGCTATTAGAAGTACAGCACTGTCAAGTGCCTCATCTCAGAACATTCCAGAACTACTGTAACAATCCAGAATCAACTATCAAAACATTCCATGTCACCCTGCCAAGTCCGGTTGTGCCTCGTTGTGTTCCTTAATGGAGTCTGTACCGTGCGTGTGCGTatgactctgtgtgtgtatctattagtgtgtgtgtaacctgtgtaTGGGTGTGTCTTAATGCTTAGTGGGTGtacgccagtgtgtgtgtgtgtgtgggtcagtgTGTGTCCTGGAGTCTCCGTCAGTCAGTCCTGAGTGGGGTCTATACGCCCATCTTCAGTAACTCCCTCCCACTAAGGCAGCCACCTGGACACAGAAGGGACTACCTTTAtgttctgtctatctgtctgtggaCTTTGAAGTAAATACAAATACTGTAAACAGGACGGTGTCCGCCCACTCTGCTCCGAGGGTGggaaaacgcatgtttttttgGTGATGACATGTCACTTCCTTATGTTATAAAATAAATTAAaccaagacaaatatga
>XM_021603153.2
TAAAGCAGCCATTCTATCTCGAGCTCTCCCAGCATCAGCACCACGGAATTACGAGCAATCTCTGTCTGCTTCTGAAACGGAGAAGAGTATCGGTTTCAAACCTGCAGGGCGAAATCTAGACAAGGCGACACGGATTTCAGTGTCGAAAGGGGAAGTTGGAAGGCAAATAACAGGTGCGCAAACAATCCACAGCTGTCGCTGTGTCATTTTGGACACCATGGACGCGCTAATGAAGGGGTTCTCGAAAGCCAAGGATGGGGTCGTGGCAGCAGCGGAGAAGACGAAGCAGGGAGTAACTGGGGCGGCTGAGATGACAAAAGGTGGCGTTATCTTTGTCGGCAACAAAACAAAGGATGGAGtcacaacagTTGCAGGTAAAACAGTGTCTGGCGTTTCCCAGGTGGGCGGAGCCATGGTAACAGGTGTGACAGCAGTGGCTCACAGGACTGTGGAGGGGGCGGGGAATATTGCTGCTGCGACTGGATTGGTCAAGAAAGACACAGCCAAACAGGATGAAGATACTATGTCTAAAGACTCACCTATCAAGGAGTCACCAGTGGACCCAGAGGGTGGTGATACTGCTGCAGAGGAGGATTCCGATGGCTATTAGAAGTACAGCACTGTCAAGTGCCTCATCTCAGAACATTCCAGAACTACTGTAACAATCCAGAATCAACTATCAAAACATTCCATGTCACCCTGCCAAGTCCGGTTGTGCCTCGTTGTGTTCCTTAATGGAGTCTGTACCGTGCGTGTGCGTatgactctgtgtgtgtatctattagtgtgtgtgtaacctgtgtaTGGGTGTGTCTTAATGCTTAGTGGGTGtacgccagtgtgtgtgtgtgtgtgggtcagtgTGTGTCCTGGAGTCTCCGTCAGTCAGTCCTGAGTGGGGTCTATACGCCCATCTTCAGTAACTCCCTCCCACTAAGGCAGCCACCTGGACACAGAAGGGACTACCTTTAtgttctgtctatctgtctgtggaCTTTGAAGTAAATACAAATACTGTAAACAGGACGGTGTCCGCCCACTCTGCTCCGAGGGTGggaaaacgcatgtttttttgGTGATGACATGTCACTTCCTTATGTTATAAAATAAATTAAaccaagacaaatatga
>XM_021603155.2
CCAACATTACTCAGTTGAGTACAGGCTTAACTGAATTACAGCAGAGACAGAATACGATATGGAATTGTATTGAATAGTTGGGGTAGGCCTTGTCTCCGAGCAATGGTCCATAGAACGGGGTTCCGATGATGGGCCTTCAGGTTATTatgctggtggtggtggggagctGGAAGGTCGTTGGAAGACTGTTGCTGCAAAACATCAAGTCAGAGACAAGGGTTGCAGGTAAAACAGTGTCTGGCGTTTCCCAGGTGGGCGGAGCCATGGTAACAGGTGTGACAGCAGTGGCTCACAGGACTGTGGAGGGGGCGGGGAATATTGCTGCTGCGACTGGATTGGTCAAGAAAGACACAGCCAAACAGGATGAAGATACTATGTCTAAAGACTCACCTATCAAGGAGTCACCAGTGGACCCAGAGGGTGGTGATACTGCTGCAGAGGAGGATTCCGATGGCTATTAGAAGTACAGCACTGTCAAGTGCCTCATCTCAGAACATTCCAGAACTACTGTAACAATCCAGAATCAACTATCAAAACATTCCATGTCACCCTGCCAAGTCCGGTTGTGCCTCGTTGTGTTCCTTAATGGAGTCTGTACCGTGCGTGTGCGTatgactctgtgtgtgtatctattagtgtgtgtgtaacctgtgtaTGGGTGTGTCTTAATGCTTAGTGGGTGtacgccagtgtgtgtgtgtgtgtgggtcagtgTGTGTCCTGGAGTCTCCGTCAGTCAGTCCTGAGTGGGGTCTATACGCCCATCTTCAGTAACTCCCTCCCACTAAGGCAGCCACCTGGACACAGAAGGGACTACCTTTAtgttctgtctatctgtctgtggaCTTTGAAGTAAATACAAATACTGTAAACAGGACGGTGTCCGCCCACTCTGCTCCGAGGGTGggaaaacgcatgtttttttgGTGATGACATGTCACTTCCTTATGTTATAAAATAAATTAAaccaagacaaatatga

Function

NR:

description
alpha-synuclein-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603151.2 False 1120 mRNA 0.49 6 47090294 47108016
XM_021603154.2 False 1083 mRNA 0.49 5 47090301 47108016
XM_036977700.1 False 1095 mRNA 0.49 6 47090301 47108016
XM_036977701.1 False 1114 mRNA 0.49 6 47090301 47108016
XM_021603153.2 False 1131 mRNA 0.49 6 47090302 47108016
XM_021603155.2 True 982 mRNA 0.48 4 47091586 47108016

Neighbor

gene id symbol gene type direction distance location
LOC110523966 LOC106561364 coding upstream 33746 47039185 ~ 47056548 (+)
LOC110523965 rd23a coding upstream 163349 46911102 ~ 46926945 (+)
LOC110523964 LOC106561374 coding upstream 195809 46798525 ~ 46894485 (+)
LOC110523963 LOC106561387 coding upstream 351796 46726070 ~ 46738498 (+)
LOC118964751 NA coding upstream 458718 46631524 ~ 46631576 (+)
LOC110523969 LOC106561351 coding downstream 16761 47124777 ~ 47127285 (+)
LOC110523971 LOC106561271 coding downstream 112401 47220417 ~ 47229083 (+)
LOC110523972 LOC106561256 coding downstream 121642 47229658 ~ 47374110 (+)
LOC101268922 LOC101268922 coding downstream 287996 47396012 ~ 47420888 (+)
LOC118964614 NA coding downstream 308296 47416312 ~ 47418009 (+)
G407219 NA non-coding upstream 4867 47085156 ~ 47085427 (+)
G407218 NA non-coding upstream 5332 47084763 ~ 47084962 (+)
G407216 NA non-coding upstream 9185 47080801 ~ 47081109 (+)
G407215 NA non-coding upstream 9970 47079984 ~ 47080324 (+)
G407206 NA non-coding upstream 24950 47065144 ~ 47065344 (+)
G407233 NA non-coding downstream 3653 47111669 ~ 47111874 (+)
G407235 NA non-coding downstream 5226 47113242 ~ 47113853 (+)
G407236 NA non-coding downstream 6913 47114929 ~ 47115164 (+)
G407246 NA non-coding downstream 20583 47128599 ~ 47128794 (+)
G407255 NA non-coding downstream 55744 47163760 ~ 47165899 (+)
G406484 NA other upstream 407175 46682863 ~ 46683119 (+)
G406401 NA other upstream 524689 46564891 ~ 46565605 (+)
mlana mlana other upstream 622147 46449922 ~ 46468147 (+)
LOC110523937 LOC106605670 other upstream 1519737 45567600 ~ 45571386 (+)
G404248 NA other upstream 2487780 44590612 ~ 44606497 (+)
G407442 NA other downstream 342783 47450799 ~ 47451146 (+)
G408135 NA other downstream 640797 47748813 ~ 47754194 (+)
G408177 NA other downstream 713574 47821590 ~ 47827475 (+)
G408222 NA other downstream 928610 48036626 ~ 48039093 (+)

Expression

LOC110523967(LOC106561354) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC110523967(LOC106561354) Expression in each Bioproject

Bar chart with 14 bars.
LOC110523967(LOC106561354) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network